Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 5-441 |
| Cow position: | chr18:28530554-28530983 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 13-527 |
| Cow position: | chr18:17670080-17670585 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 13-530 |
| Cow position: | chr18:18247998-18247503 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 17-205 |
| Cow position: | chr18:18484195-18484381 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 18-145 |
| Cow position: | chr18:29028464-29028591 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 18-177 |
| Cow position: | chr18:38090045-38090205 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-375 |
| Cow position: | chr18:225553-225898 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 18-453 |
| Cow position: | chr18:48527368-48527775 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-481 |
| Cow position: | chr18:38341660-38342108 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-489 |
| Cow position: | chr18:24620300-24619845 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-513 |
| Cow position: | chr18:30844020-30844507 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-522 |
| Cow position: | chr18:51251562-51251060 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-545 |
| Cow position: | chr18:36649262-36648767 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 345 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 19-221 |
| Cow position: | chr18:21609278-21609477 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-322 |
| Cow position: | chr18:1954985-1955282 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-452 |
| Cow position: | chr18:40059562-40059140 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-519 |
| Cow position: | chr18:42629250-42628757 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-519 |
| Cow position: | chr18:51579899-51580392 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-302 |
| Cow position: | chr18:28658370-28658644 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 20-507 |
| Cow position: | chr18:10802016-10802476 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 20-523 |
| Cow position: | chr18:17334862-17335353 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 23-444 |
| Cow position: | chr18:51713180-51713595 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 25-519 |
| Cow position: | chr18:43463891-43464379 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 25-519 |
| Cow position: | chr18:54166776-54167253 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 29-458 |
| Cow position: | chr18:23044343-23043923 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 29-465 |
| Cow position: | chr18:43638269-43637837 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 30-439 |
| Cow position: | chr18:18861086-18860668 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 30-465 |
| Cow position: | chr18:9365419-9364996 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 30-519 |
| Cow position: | chr18:33523108-33522612 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 30-548 |
| Cow position: | chr18:36779182-36778673 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 21 |
| Conread position: | 31-468 |
| Cow position: | chr18:52564047-52563619 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 32-530 |
| Cow position: | chr18:37861915-37862418 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 33-545 |
| Cow position: | chr18:12270028-12269521 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 34-321 |
| Cow position: | chr18:55001240-55001523 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 37-519 |
| Cow position: | chr18:37733558-37733082 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 37-526 |
| Cow position: | chr18:49781419-49781908 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 340 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 39-487 |
| Cow position: | chr18:30846207-30846635 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 42-464 |
| Cow position: | chr18:41498714-41498314 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 52-525 |
| Cow position: | chr18:14817087-14816599 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 88, 14 |
| Conread position: | 55-451 |
| Cow position: | chr18:15688830-15688462 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 79-489 |
| Cow position: | chr18:19310975-19310574 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 252, 61 |
| Conread position: | 99-487 |
| Cow position: | chr18:21175615-21175237 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 111-501 |
| Cow position: | chr18:36820062-36820459 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 148 |
| Conread position: | 116-444 |
| Cow position: | chr18:12666639-12666958 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 169-453 |
| Cow position: | chr18:23880108-23879826 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 183-465 |
| Cow position: | chr18:23473124-23473401 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 145, 77 |
| Conread position: | 184-460 |
| Cow position: | chr18:54085140-54085412 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 191-530 |
| Cow position: | chr18:51309615-51309282 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 248, 34 |
| Conread position: | 192-454 |
| Cow position: | chr18:16437803-16437550 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 138, 65 |
| Conread position: | 197-523 |
| Cow position: | chr18:31996645-31996324 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 149, 64 |
| Conread position: | 200-443 |
| Cow position: | chr18:14869659-14869429 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 214-530 |
| Cow position: | chr18:45400906-45400599 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 242-519 |
| Cow position: | chr18:21236756-21237030 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 262-486 |
| Cow position: | chr18:40078527-40078749 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 182, 113 |
| Conread position: | 262-530 |
| Cow position: | chr18:21797738-21797474 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 270-519 |
| Cow position: | chr18:48798350-48798103 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 62 |
Show alignments to all cow chromosomes.