Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 13-237 |
| Cow position: | chr19:32450630-32450410 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-519 |
| Cow position: | chr19:38396723-38397208 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-527 |
| Cow position: | chr19:9704294-9704801 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 16-519 |
| Cow position: | chr19:55366919-55367421 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 16-525 |
| Cow position: | chr19:41851605-41852089 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-162 |
| Cow position: | chr19:36079180-36079320 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-250 |
| Cow position: | chr19:35077341-35077569 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 18-252 |
| Cow position: | chr19:9293819-9293586 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-302 |
| Cow position: | chr19:7472943-7472662 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 18-319 |
| Cow position: | chr19:19928240-19928532 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 18-321 |
| Cow position: | chr19:18786763-18787068 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 18-324 |
| Cow position: | chr19:33621397-33621699 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-325 |
| Cow position: | chr19:1485864-1486166 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-443 |
| Cow position: | chr19:29365417-29365010 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-451 |
| Cow position: | chr19:42240729-42241157 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr19:3032446-3032885 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr19:7053764-7054193 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr19:14180108-14180549 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr19:33877309-33876868 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr19:42229-41732 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr19:50561954-50561463 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 334 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-530 |
| Cow position: | chr19:28912414-28911918 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 332 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 19-210 |
| Cow position: | chr19:9536814-9537005 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-464 |
| Cow position: | chr19:55974973-55975418 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 301 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 19-519 |
| Cow position: | chr19:12375488-12375971 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 19-523 |
| Cow position: | chr19:54542102-54542598 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 20-524 |
| Cow position: | chr19:39602594-39603092 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 20-537 |
| Cow position: | chr19:28515935-28516444 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 22-144 |
| Cow position: | chr19:31396340-31396461 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 22-530 |
| Cow position: | chr19:12058072-12057572 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 25-184 |
| Cow position: | chr19:29714434-29714594 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 25-274 |
| Cow position: | chr19:3602030-3602275 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 25-501 |
| Cow position: | chr19:6614954-6614492 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 304 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 30-465 |
| Cow position: | chr19:12209045-12209478 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 31-524 |
| Cow position: | chr19:36419964-36419502 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 331 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 32-230 |
| Cow position: | chr19:18888134-18888330 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 32-455 |
| Cow position: | chr19:19192150-19191742 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 32-465 |
| Cow position: | chr19:30937337-30937768 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 32-522 |
| Cow position: | chr19:15940851-15940378 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 33-455 |
| Cow position: | chr19:35062014-35062412 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 37-530 |
| Cow position: | chr19:15495261-15495742 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 38-537 |
| Cow position: | chr19:22859974-22860474 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 39-251 |
| Cow position: | chr19:27439156-27439363 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 39-465 |
| Cow position: | chr19:30565426-30565002 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 40-520 |
| Cow position: | chr19:42871234-42870758 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 28 |
| Conread position: | 44-452 |
| Cow position: | chr19:52465423-52465823 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 49-443 |
| Cow position: | chr19:9408139-9407754 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 49-499 |
| Cow position: | chr19:41213682-41214117 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 395, 19 |
| Conread position: | 51-487 |
| Cow position: | chr19:1267367-1267799 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 55-514 |
| Cow position: | chr19:31280082-31279643 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 273, 11 |
| Conread position: | 75-519 |
| Cow position: | chr19:12600867-12601305 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 78-529 |
| Cow position: | chr19:9069993-9070432 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 145, 67 |
| Conread position: | 98-519 |
| Cow position: | chr19:48626869-48626458 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 235, 42 |
| Conread position: | 116-527 |
| Cow position: | chr19:15137806-15138230 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 118-545 |
| Cow position: | chr19:9099413-9098990 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 166-519 |
| Cow position: | chr19:35781625-35781275 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 165, 7 |
| Conread position: | 166-530 |
| Cow position: | chr19:9098179-9098539 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 169-507 |
| Cow position: | chr19:41166911-41166578 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 170-523 |
| Cow position: | chr19:46821593-46821247 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 171-530 |
| Cow position: | chr19:19462265-19461912 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 223, 45 |
| Conread position: | 182-495 |
| Cow position: | chr19:25555930-25556238 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 212, 78 |
| Conread position: | 202-519 |
| Cow position: | chr19:5902741-5902426 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 210-523 |
| Cow position: | chr19:21291432-21291133 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 229, 35 |
| Conread position: | 283-511 |
| Cow position: | chr19:34269403-34269631 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 68, 99 |
| Conread position: | 283-548 |
| Cow position: | chr19:6980740-6980997 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 285-530 |
| Cow position: | chr19:35432030-35432261 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 154, 46 |
| Conread position: | 389-524 |
| Cow position: | chr19:36998172-36998305 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.