Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 6-514
Cow position: chr2:6697905-6698389 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 29

Conread position: 11-220
Cow position: chr2:1627741-1627949 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 40, 54

Conread position: 13-317
Cow position: chr2:2721667-2721368 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 52

Conread position: 13-481
Cow position: chr2:71519270-71519731 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 22

Conread position: 15-193
Cow position: chr2:53451586-53451758 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 13

Conread position: 16-486
Cow position: chr2:76180837-76181290 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 17-304
Cow position: chr2:41058105-41058381 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 49

Conread position: 17-487
Cow position: chr2:70933616-70934076 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 18

Conread position: 18-252
Cow position: chr2:9173693-9173923 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 17

Conread position: 18-302
Cow position: chr2:71437805-71438080 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 32, 17

Conread position: 18-304
Cow position: chr2:294640-294914 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 33, 17

Conread position: 18-323
Cow position: chr2:80160693-80160992 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 18-324
Cow position: chr2:66217967-66218273 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 32, 47

Conread position: 18-435
Cow position: chr2:16071848-16072249 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-461
Cow position: chr2:23129346-23129766 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 18

Conread position: 18-464
Cow position: chr2:41157507-41157075 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 302
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 47

Conread position: 18-465
Cow position: chr2:10182901-10183332 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 293
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr2:27179706-27179264 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 18-465
Cow position: chr2:46182197-46182639 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr2:60947315-60946876 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-466
Cow position: chr2:26873931-26873508 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 294
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 291, 17

Conread position: 18-487
Cow position: chr2:32455124-32455586 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 18-511
Cow position: chr2:85474427-85474911 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 10

Conread position: 18-513
Cow position: chr2:16415467-16414968 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 18-519
Cow position: chr2:9955895-9956387 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr2:53543276-53542782 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr2:62731861-62731367 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-524
Cow position: chr2:26113444-26113947 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 18-525
Cow position: chr2:62819145-62819647 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 328
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 31, 17

Conread position: 18-527
Cow position: chr2:68191034-68191513 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 335
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 34, 17

Conread position: 18-530
Cow position: chr2:16872380-16871905 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 18-535
Cow position: chr2:76985137-76985654 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-545
Cow position: chr2:17940705-17941233 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 50

Conread position: 18-548
Cow position: chr2:33398113-33398632 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 17

Conread position: 19-443
Cow position: chr2:50612472-50612889 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr2:64531626-64531133 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 20-212
Cow position: chr2:14749004-14748820 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 10

Conread position: 20-304
Cow position: chr2:63589941-63590218 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 30, 45

Conread position: 20-317
Cow position: chr2:43525501-43525797 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 15, 46

Conread position: 20-398
Cow position: chr2:48749147-48749517 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 260
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 30, 17

Conread position: 20-452
Cow position: chr2:28611519-28611933 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 290
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 25, 50

Conread position: 20-524
Cow position: chr2:287598-288094 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 345
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 35, 15

Conread position: 22-486
Cow position: chr2:33390714-33390268 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 22-530
Cow position: chr2:64765587-64766085 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 24-528
Cow position: chr2:49827207-49827703 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 42

Conread position: 25-216
Cow position: chr2:11101446-11101648 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 44

Conread position: 25-455
Cow position: chr2:20135558-20135970 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 288
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 415, 10

Conread position: 25-526
Cow position: chr2:852318-852817 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 25-526
Cow position: chr2:32659760-32659279 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 10

Conread position: 27-148
Cow position: chr2:68843805-68843925 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 38

Conread position: 27-240
Cow position: chr2:10719384-10719593 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 38

Conread position: 28-514
Cow position: chr2:43922712-43923181 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 329
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 39

Conread position: 30-251
Cow position: chr2:41526252-41526469 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 35

Conread position: 30-500
Cow position: chr2:38079565-38080019 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 314
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 22, 34

Conread position: 31-442
Cow position: chr2:38561588-38561208 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 274
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 21, 37

Conread position: 31-515
Cow position: chr2:56895194-56895665 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 316
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 11

Conread position: 31-519
Cow position: chr2:56829078-56829570 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 326
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 36

Conread position: 32-292
Cow position: chr2:39605597-39605848 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 29

Conread position: 32-430
Cow position: chr2:51493437-51493812 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 260
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 26

Conread position: 32-469
Cow position: chr2:14405801-14405376 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 287
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 37

Conread position: 32-499
Cow position: chr2:32910352-32909913 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 306
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 294, 59

Conread position: 32-513
Cow position: chr2:39504483-39504960 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 23

Conread position: 32-519
Cow position: chr2:47933049-47933533 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 328
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 20, 35

Conread position: 32-530
Cow position: chr2:43777761-43778228 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 323
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 35

Conread position: 32-548
Cow position: chr2:2715229-2714749 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 335
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 156, 21

Conread position: 33-530
Cow position: chr2:29233346-29232875 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 334
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 39

Conread position: 34-305
Cow position: chr2:82612403-82612659 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 37

Conread position: 34-530
Cow position: chr2:27145791-27146276 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 33

Conread position: 36-481
Cow position: chr2:25885230-25885669 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 32

Conread position: 37-465
Cow position: chr2:11726692-11726270 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 30

Conread position: 37-492
Cow position: chr2:10881911-10881464 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 288
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 18

Conread position: 37-519
Cow position: chr2:53182398-53182873 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 30

Conread position: 38-321
Cow position: chr2:9186584-9186861 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 12, 27

Conread position: 41-528
Cow position: chr2:30909806-30909332 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 26

Conread position: 43-535
Cow position: chr2:31723143-31723613 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 339
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 9, 24

Conread position: 51-519
Cow position: chr2:41162548-41162085 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 19

Conread position: 52-526
Cow position: chr2:63873433-63873908 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 328
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 112, 14

Conread position: 54-514
Cow position: chr2:10640359-10639922 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 310
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 68, 12

Conread position: 55-532
Cow position: chr2:41045567-41046040 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 312
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 276, 11

Conread position: 57-506
Cow position: chr2:76811622-76811179 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 276
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 190, 9

Conread position: 79-523
Cow position: chr2:62435276-62435696 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 291
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 76, 90

Conread position: 111-455
Cow position: chr2:10740911-10741246 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 257, 29

Conread position: 133-493
Cow position: chr2:59441747-59441409 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 306, 23

Conread position: 166-474
Cow position: chr2:43108131-43107833 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 148, 94

Conread position: 167-519
Cow position: chr2:5318336-5317988 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 233
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 167, 95

Conread position: 174-495
Cow position: chr2:3621140-3621442 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 211, 86

Conread position: 179-524
Cow position: chr2:64790656-64790984 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 228
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 44

Conread position: 180-530
Cow position: chr2:26080677-26080341 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 253
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 150, 77

Conread position: 183-526
Cow position: chr2:50565484-50565149 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 147, 40

Conread position: 190-465
Cow position: chr2:10207454-10207727 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 189
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 33, 39

Conread position: 195-525
Cow position: chr2:26033124-26032802 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 136, 62

Conread position: 195-527
Cow position: chr2:47955253-47954922 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 230
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 62

Conread position: 196-524
Cow position: chr2:871086-871411 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 226
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 136, 61

Conread position: 209-529
Cow position: chr2:24018763-24018453 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 142, 29

Conread position: 230-497
Cow position: chr2:32753429-32753692 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 71, 27

Conread position: 258-528
Cow position: chr2:77067644-77067380 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 189, 120

Conread position: 283-524
Cow position: chr2:1370154-1369919 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 96, 56

Conread position: 371-529
Cow position: chr2:1957899-1957738 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 18, 141

Show alignments to all cow chromosomes.