Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 12-465 |
| Cow position: | chr20:28822375-28822805 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 12-523 |
| Cow position: | chr20:31564363-31564854 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 13-452 |
| Cow position: | chr20:32084597-32085011 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 18-218 |
| Cow position: | chr20:26078785-26078980 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-228 |
| Cow position: | chr20:10199981-10199774 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 18-375 |
| Cow position: | chr20:7803596-7803944 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-375 |
| Cow position: | chr20:15240189-15240545 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-443 |
| Cow position: | chr20:10759871-10760286 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-443 |
| Cow position: | chr20:28282933-28282515 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 18-454 |
| Cow position: | chr20:24440033-24439596 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 18-461 |
| Cow position: | chr20:13063712-13063262 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 18-463 |
| Cow position: | chr20:24660924-24660506 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 18-465 |
| Cow position: | chr20:6054867-6055316 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-465 |
| Cow position: | chr20:14512553-14512110 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr20:24399011-24399450 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 17 |
| Conread position: | 18-489 |
| Cow position: | chr20:27332085-27332561 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-519 |
| Cow position: | chr20:8446268-8445774 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr20:26052497-26052991 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr20:31505189-31504695 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr20:37154111-37154604 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr20:40423480-40423966 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 328 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 18-523 |
| Cow position: | chr20:21767775-21768255 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-523 |
| Cow position: | chr20:22007071-22006581 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-523 |
| Cow position: | chr20:28141591-28141098 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-525 |
| Cow position: | chr20:21019181-21018673 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-525 |
| Cow position: | chr20:25658174-25658669 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-530 |
| Cow position: | chr20:23902456-23901967 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 16 |
| Conread position: | 18-530 |
| Cow position: | chr20:34363106-34362609 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-530 |
| Cow position: | chr20:42931705-42931199 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 18-537 |
| Cow position: | chr20:23803006-23802495 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-546 |
| Cow position: | chr20:6017455-6017972 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 19-465 |
| Cow position: | chr20:40503867-40504307 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-527 |
| Cow position: | chr20:6831221-6831704 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 22-461 |
| Cow position: | chr20:14472607-14473031 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 148, 13 |
| Conread position: | 22-487 |
| Cow position: | chr20:12333520-12333073 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 150, 44 |
| Conread position: | 22-519 |
| Cow position: | chr20:30353512-30354015 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 25-466 |
| Cow position: | chr20:14585955-14585511 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 25-525 |
| Cow position: | chr20:36417889-36418367 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 30-424 |
| Cow position: | chr20:2782227-2782610 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 30-438 |
| Cow position: | chr20:10913730-10914134 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 30-464 |
| Cow position: | chr20:21015162-21015579 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 106 |
| Conread position: | 30-530 |
| Cow position: | chr20:7875037-7875529 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 31-453 |
| Cow position: | chr20:14210550-14210951 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 31-482 |
| Cow position: | chr20:32939125-32938688 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 33-514 |
| Cow position: | chr20:2178514-2178999 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 37-465 |
| Cow position: | chr20:5538982-5538560 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 37-496 |
| Cow position: | chr20:868980-869446 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 40-465 |
| Cow position: | chr20:24445512-24445922 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 44-530 |
| Cow position: | chr20:24831456-24831928 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 66-487 |
| Cow position: | chr20:9007027-9007443 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 265, 85 |
| Conread position: | 92-527 |
| Cow position: | chr20:31000974-31000552 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 58 |
| Conread position: | 96-465 |
| Cow position: | chr20:26076325-26075972 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 255, 58 |
| Conread position: | 120-524 |
| Cow position: | chr20:18970678-18970290 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 264, 36 |
| Conread position: | 122-519 |
| Cow position: | chr20:3781948-3782342 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 136-526 |
| Cow position: | chr20:28103144-28102761 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 172-519 |
| Cow position: | chr20:6096974-6097303 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 207, 85 |
| Conread position: | 194-452 |
| Cow position: | chr20:21837693-21837436 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 194-523 |
| Cow position: | chr20:13817309-13816975 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 115, 61 |
| Conread position: | 198-537 |
| Cow position: | chr20:33355828-33355491 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 202-548 |
| Cow position: | chr20:39629938-39630276 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 145, 59 |
| Conread position: | 226-465 |
| Cow position: | chr20:24836720-24836957 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 226-527 |
| Cow position: | chr20:2016168-2016458 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 263-524 |
| Cow position: | chr20:27895837-27896092 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 65 |
Show alignments to all cow chromosomes.