Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 13-519
Cow position: chr22:3488538-3489037 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 15-465
Cow position: chr22:40374178-40373738 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 293
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 35, 20

Conread position: 15-465
Cow position: chr22:41271414-41271852 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 308
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 20

Conread position: 15-524
Cow position: chr22:243962-244470 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 341
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 67, 51

Conread position: 16-452
Cow position: chr22:13769063-13768643 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 292
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 39, 19

Conread position: 16-465
Cow position: chr22:22278884-22278444 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 19

Conread position: 16-519
Cow position: chr22:43279687-43280184 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 19

Conread position: 17-465
Cow position: chr22:8733738-8734181 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 292
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 11

Conread position: 18-158
Cow position: chr22:13610320-13610456 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 33, 17

Conread position: 18-203
Cow position: chr22:29575289-29575469 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 32, 17

Conread position: 18-221
Cow position: chr22:58978-58778 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 12

Conread position: 18-258
Cow position: chr22:18487708-18487947 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 32, 12

Conread position: 18-300
Cow position: chr22:11490131-11489860 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 30, 12

Conread position: 18-322
Cow position: chr22:10906413-10906715 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 17

Conread position: 18-422
Cow position: chr22:30364629-30364237 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 270
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 149, 17

Conread position: 18-443
Cow position: chr22:9685593-9685181 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 280
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 17

Conread position: 18-443
Cow position: chr22:22563462-22563044 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-443
Cow position: chr22:36193438-36193030 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 34, 17

Conread position: 18-447
Cow position: chr22:48271236-48271662 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 284
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 29, 19

Conread position: 18-465
Cow position: chr22:13017212-13017648 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 300
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 31, 17

Conread position: 18-465
Cow position: chr22:33094129-33093690 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-485
Cow position: chr22:45606729-45607180 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 16

Conread position: 18-490
Cow position: chr22:23104812-23105280 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 17

Conread position: 18-514
Cow position: chr22:11643140-11643627 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 18-514
Cow position: chr22:33448517-33448999 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 17

Conread position: 18-520
Cow position: chr22:15869459-15868984 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 330
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 34, 17

Conread position: 18-523
Cow position: chr22:17834035-17834535 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 332
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 34, 25

Conread position: 18-529
Cow position: chr22:44654311-44653799 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-530
Cow position: chr22:12631059-12631542 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 18-530
Cow position: chr22:14490934-14490423 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 18-531
Cow position: chr22:14155151-14155665 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 18-537
Cow position: chr22:33951168-33951677 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 19-236
Cow position: chr22:34931185-34931396 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 16

Conread position: 19-250
Cow position: chr22:27337373-27337600 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 46

Conread position: 19-464
Cow position: chr22:19712598-19713036 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr22:40828275-40828769 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-523
Cow position: chr22:22607950-22607453 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 20-251
Cow position: chr22:29955434-29955662 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 15

Conread position: 20-321
Cow position: chr22:10677114-10677407 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 31, 45

Conread position: 20-463
Cow position: chr22:44924553-44924977 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 296
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 15

Conread position: 20-529
Cow position: chr22:44195554-44195057 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 327
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 15

Conread position: 22-148
Cow position: chr22:32153193-32153319 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 13

Conread position: 24-339
Cow position: chr22:43516416-43516100 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 28, 37

Conread position: 24-519
Cow position: chr22:14509739-14510218 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 11

Conread position: 25-465
Cow position: chr22:47906133-47905700 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 287
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 25, 46

Conread position: 25-526
Cow position: chr22:8418035-8417544 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 10

Conread position: 30-218
Cow position: chr22:22160275-22160090 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 22, 31

Conread position: 30-530
Cow position: chr22:8646019-8646495 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 45

Conread position: 30-530
Cow position: chr22:33587515-33587022 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 13

Conread position: 31-487
Cow position: chr22:1310164-1310614 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 299
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 37

Conread position: 31-489
Cow position: chr22:11746342-11746790 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 303
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 167, 35

Conread position: 32-452
Cow position: chr22:13826022-13826430 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 271
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 37

Conread position: 32-452
Cow position: chr22:34917394-34916977 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 20, 37

Conread position: 32-465
Cow position: chr22:5338042-5338474 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 301
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 21, 35

Conread position: 32-490
Cow position: chr22:36320031-36319599 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 305
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 21, 32

Conread position: 32-501
Cow position: chr22:46615619-46616071 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 295
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 253, 11

Conread position: 32-518
Cow position: chr22:12595286-12594803 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 316
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 32

Conread position: 32-537
Cow position: chr22:41032541-41032035 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 32

Conread position: 33-421
Cow position: chr22:10386158-10385776 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 252
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 18, 39

Conread position: 33-454
Cow position: chr22:46355607-46356004 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 272
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 31

Conread position: 34-530
Cow position: chr22:38247200-38247672 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 32

Conread position: 37-525
Cow position: chr22:39133636-39133160 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 38-455
Cow position: chr22:556559-556965 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 29

Conread position: 38-530
Cow position: chr22:11305661-11305174 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 29

Conread position: 51-519
Cow position: chr22:23864568-23864108 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 310
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 121, 15

Conread position: 61-537
Cow position: chr22:529162-529642 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 315
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 48

Conread position: 64-495
Cow position: chr22:31111151-31110736 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 288
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 124, 102

Conread position: 69-425
Cow position: chr22:9695748-9695387 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 69, 129

Conread position: 81-519
Cow position: chr22:14357944-14358362 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 281
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 77

Conread position: 87-524
Cow position: chr22:16863470-16863911 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 290
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 43

Conread position: 124-519
Cow position: chr22:304638-304261 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 244
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 138-464
Cow position: chr22:581840-582152 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 142-447
Cow position: chr22:34894218-34893919 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 9

Conread position: 157-528
Cow position: chr22:25201782-25201418 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 104

Conread position: 166-435
Cow position: chr22:27510720-27510455 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 164, 11

Conread position: 166-531
Cow position: chr22:8268074-8267728 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 271, 96

Conread position: 168-530
Cow position: chr22:38251964-38251609 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 89

Conread position: 170-446
Cow position: chr22:11767195-11767468 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 161, 87

Conread position: 170-465
Cow position: chr22:36503066-36503353 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 161, 33

Conread position: 179-464
Cow position: chr22:12094770-12095040 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 135, 81

Conread position: 182-519
Cow position: chr22:27335358-27335032 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 220
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 263, 79

Conread position: 184-523
Cow position: chr22:15291620-15291284 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 224
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 114, 73

Conread position: 197-530
Cow position: chr22:36357667-36357345 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 151, 10

Conread position: 200-495
Cow position: chr22:25930203-25929915 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 62

Conread position: 202-429
Cow position: chr22:8188720-8188507 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 128, 59

Conread position: 203-500
Cow position: chr22:11994153-11994431 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 193, 63

Conread position: 204-465
Cow position: chr22:16818067-16817797 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 126, 38

Conread position: 208-519
Cow position: chr22:2531490-2531803 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 205
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 49

Conread position: 226-476
Cow position: chr22:28312963-28312714 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 36

Conread position: 246-465
Cow position: chr22:33113707-33113486 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 48

Conread position: 283-526
Cow position: chr22:43045182-43045421 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 69

Conread position: 385-522
Cow position: chr22:41170320-41170183 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 124

Show alignments to all cow chromosomes.