Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 9-460 |
| Cow position: | chr23:6698635-6698183 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 13-153 |
| Cow position: | chr23:36005172-36005311 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-519 |
| Cow position: | chr23:28222491-28221993 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 15-530 |
| Cow position: | chr23:20379912-20379436 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 344 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 16-309 |
| Cow position: | chr23:19737554-19737846 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 18-234 |
| Cow position: | chr23:4608819-4609032 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 18-246 |
| Cow position: | chr23:7468731-7468507 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 18-252 |
| Cow position: | chr23:9393108-9393338 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-324 |
| Cow position: | chr23:18467548-18467827 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 18-443 |
| Cow position: | chr23:610487-610068 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-443 |
| Cow position: | chr23:15569348-15568930 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-447 |
| Cow position: | chr23:6441299-6441697 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-481 |
| Cow position: | chr23:12081443-12081000 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 18-487 |
| Cow position: | chr23:15180742-15180281 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 18-492 |
| Cow position: | chr23:8277056-8277519 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr23:30682125-30682629 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-519 |
| Cow position: | chr23:36672642-36672153 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-523 |
| Cow position: | chr23:11404900-11405396 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 18-527 |
| Cow position: | chr23:6173235-6173737 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 18-529 |
| Cow position: | chr23:2528611-2529114 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 19-537 |
| Cow position: | chr23:1535895-1535398 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 359, 32 |
| Conread position: | 20-443 |
| Cow position: | chr23:10164576-10164977 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 20-452 |
| Cow position: | chr23:6444417-6443992 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 20-519 |
| Cow position: | chr23:5458523-5458031 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 22-334 |
| Cow position: | chr23:41116333-41116642 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 24-533 |
| Cow position: | chr23:35313465-35313969 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 30-243 |
| Cow position: | chr23:17348008-17348212 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 30-527 |
| Cow position: | chr23:40371581-40372071 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 31-585 |
| Cow position: | chr23:8291223-8290686 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 360 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 32-447 |
| Cow position: | chr23:15866138-15866540 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 32-455 |
| Cow position: | chr23:20862223-20861824 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 347, 21 |
| Conread position: | 32-465 |
| Cow position: | chr23:25030409-25030818 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 291, 23 |
| Conread position: | 32-507 |
| Cow position: | chr23:9229160-9228685 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 32-519 |
| Cow position: | chr23:29446182-29446660 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 32-548 |
| Cow position: | chr23:36184219-36184729 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 33-465 |
| Cow position: | chr23:20194247-20194662 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 34-514 |
| Cow position: | chr23:7249351-7249817 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 38-465 |
| Cow position: | chr23:17846756-17846337 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 53-443 |
| Cow position: | chr23:26840922-26840537 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 278, 13 |
| Conread position: | 82-523 |
| Cow position: | chr23:10905596-10905165 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 121-465 |
| Cow position: | chr23:15038650-15038980 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 209, 29 |
| Conread position: | 122-433 |
| Cow position: | chr23:41476252-41476557 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 175, 34 |
| Conread position: | 151-519 |
| Cow position: | chr23:25670119-25670488 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 169-514 |
| Cow position: | chr23:8388506-8388842 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 162, 15 |
| Conread position: | 188-512 |
| Cow position: | chr23:28890151-28890471 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 193-443 |
| Cow position: | chr23:17187404-17187162 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 134, 30 |
| Conread position: | 194-524 |
| Cow position: | chr23:35280915-35281233 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 203-482 |
| Cow position: | chr23:34271563-34271298 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 236, 55 |
| Conread position: | 203-522 |
| Cow position: | chr23:250209-250522 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 206-530 |
| Cow position: | chr23:40539079-40539401 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 209-541 |
| Cow position: | chr23:15351788-15351474 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 266-523 |
| Cow position: | chr23:36014201-36013945 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 391-530 |
| Cow position: | chr23:41538083-41537944 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 118 |
Show alignments to all cow chromosomes.