Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 13-519 |
| Cow position: | chr24:17763717-17764220 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 342 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 13-519 |
| Cow position: | chr24:29180230-29179751 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 15-464 |
| Cow position: | chr24:13236150-13235705 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 18-239 |
| Cow position: | chr24:12241214-12240996 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 18-421 |
| Cow position: | chr24:16996457-16996065 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-443 |
| Cow position: | chr24:6443315-6442899 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 18-443 |
| Cow position: | chr24:18266616-18267032 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 18-464 |
| Cow position: | chr24:17752372-17752807 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 18-464 |
| Cow position: | chr24:29083780-29084225 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-464 |
| Cow position: | chr24:33239004-33239440 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr24:7030601-7031052 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-498 |
| Cow position: | chr24:20507170-20507642 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-502 |
| Cow position: | chr24:1473339-1472873 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-519 |
| Cow position: | chr24:5929657-5929164 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr24:6416040-6415548 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 18-523 |
| Cow position: | chr24:14249704-14250203 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-530 |
| Cow position: | chr24:29369719-29370225 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 18-535 |
| Cow position: | chr24:27761933-27761431 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 20-464 |
| Cow position: | chr24:7782254-7782685 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 20-514 |
| Cow position: | chr24:19040299-19040761 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 22-469 |
| Cow position: | chr24:3332689-3333117 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 25-205 |
| Cow position: | chr24:30262863-30262689 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 25-523 |
| Cow position: | chr24:11462138-11462625 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 27-324 |
| Cow position: | chr24:33291628-33291910 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 29-264 |
| Cow position: | chr24:38474171-38474403 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 30-185 |
| Cow position: | chr24:17860728-17860880 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 30-444 |
| Cow position: | chr24:35503119-35503523 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 24 |
| Conread position: | 30-540 |
| Cow position: | chr24:7466457-7466945 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 345 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 31-294 |
| Cow position: | chr24:42581668-42581938 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 31-513 |
| Cow position: | chr24:27229469-27229942 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 32-375 |
| Cow position: | chr24:17030044-17030397 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 32-530 |
| Cow position: | chr24:23486527-23486050 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 33-526 |
| Cow position: | chr24:26792749-26793220 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 34-540 |
| Cow position: | chr24:9550122-9549629 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 37-565 |
| Cow position: | chr24:38187237-38186728 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 330 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 38-523 |
| Cow position: | chr24:42938106-42938576 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 44-526 |
| Cow position: | chr24:32609161-32608689 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 55-495 |
| Cow position: | chr24:13000304-13000733 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 57-525 |
| Cow position: | chr24:28730893-28730428 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 78-519 |
| Cow position: | chr24:36267986-36268420 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 94-541 |
| Cow position: | chr24:7576026-7576457 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 121-524 |
| Cow position: | chr24:40896464-40896861 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 270, 30 |
| Conread position: | 135-478 |
| Cow position: | chr24:31050712-31050385 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 143-519 |
| Cow position: | chr24:9071089-9071464 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 157-530 |
| Cow position: | chr24:44363609-44363966 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 168-530 |
| Cow position: | chr24:12039245-12038894 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 141, 85 |
| Conread position: | 170-465 |
| Cow position: | chr24:31357316-31357028 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 160, 87 |
| Conread position: | 175-447 |
| Cow position: | chr24:39956384-39956654 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 155, 82 |
| Conread position: | 213-548 |
| Cow position: | chr24:24485249-24485579 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 224-465 |
| Cow position: | chr24:28336387-28336623 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 162, 33 |
| Conread position: | 265-570 |
| Cow position: | chr24:32303776-32304077 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 266-524 |
| Cow position: | chr24:21888254-21888010 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 173, 5 |
Show alignments to all cow chromosomes.