Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 13-426
Cow position: chr25:28327881-28328296 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 275
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 158, 22

Conread position: 13-514
Cow position: chr25:14774712-14774230 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 13-518
Cow position: chr25:14755834-14756329 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 13-519
Cow position: chr25:16922218-16922708 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 16-530
Cow position: chr25:30162591-30163094 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 18

Conread position: 17-457
Cow position: chr25:20496105-20495691 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 301
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 35, 18

Conread position: 18-207
Cow position: chr25:9178662-9178849 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 44

Conread position: 18-322
Cow position: chr25:14823168-14823465 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 18-452
Cow position: chr25:23739683-23740094 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 301
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 32, 17

Conread position: 18-464
Cow position: chr25:7800589-7800154 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 292
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 17

Conread position: 18-473
Cow position: chr25:27199513-27199074 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 288
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 162, 26

Conread position: 18-519
Cow position: chr25:8655865-8655374 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-519
Cow position: chr25:9413918-9413429 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr25:10137400-10136895 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 327
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 36, 17

Conread position: 18-519
Cow position: chr25:17658185-17657702 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 12

Conread position: 18-519
Cow position: chr25:23863778-23864292 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 338
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 35, 17

Conread position: 18-523
Cow position: chr25:18424852-18424374 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 337
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 17

Conread position: 18-523
Cow position: chr25:18487046-18486537 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 337
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 178, 17

Conread position: 18-562
Cow position: chr25:30525800-30526331 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 19-144
Cow position: chr25:27535370-27535494 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 16

Conread position: 19-465
Cow position: chr25:36127330-36127771 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr25:3688710-3688217 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-523
Cow position: chr25:35589644-35589155 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 20-523
Cow position: chr25:24077204-24077684 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 329
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 15

Conread position: 20-523
Cow position: chr25:24302692-24303188 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 20-540
Cow position: chr25:31954395-31954896 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 20-545
Cow position: chr25:12081784-12082290 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 344
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 15

Conread position: 22-530
Cow position: chr25:24636576-24637069 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 46

Conread position: 25-334
Cow position: chr25:38606767-38607063 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 10

Conread position: 31-530
Cow position: chr25:9979264-9979756 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 33

Conread position: 31-530
Cow position: chr25:13941179-13941663 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 38

Conread position: 32-229
Cow position: chr25:3404652-3404455 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 33

Conread position: 33-303
Cow position: chr25:10288126-10288408 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 6, 33

Conread position: 33-518
Cow position: chr25:19015422-19015884 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 316
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 31

Conread position: 34-465
Cow position: chr25:34343350-34343772 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 282
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 18, 33

Conread position: 34-514
Cow position: chr25:18474755-18474285 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 320
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 33

Conread position: 39-479
Cow position: chr25:40140954-40141385 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 278
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 291, 27

Conread position: 39-519
Cow position: chr25:17994742-17995208 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 319
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 11, 28

Conread position: 41-519
Cow position: chr25:17210581-17211052 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 26

Conread position: 45-465
Cow position: chr25:27609712-27609302 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 273
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 7, 24

Conread position: 52-514
Cow position: chr25:18023295-18022840 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 14

Conread position: 57-430
Cow position: chr25:25705819-25705460 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 228, 11

Conread position: 59-523
Cow position: chr25:10893165-10893605 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 305
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 9, 0

Conread position: 87-433
Cow position: chr25:28262859-28262542 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 97-548
Cow position: chr25:24663794-24664227 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 30

Conread position: 121-518
Cow position: chr25:32663416-32663038 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 262
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 51, 22

Conread position: 170-528
Cow position: chr25:14995607-14995946 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 161, 14

Conread position: 180-519
Cow position: chr25:14012274-14011925 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 234
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 82, 151

Conread position: 184-497
Cow position: chr25:22713150-22712848 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 183, 7

Conread position: 188-519
Cow position: chr25:9395822-9395491 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 70

Conread position: 191-498
Cow position: chr25:15005475-15005187 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 140, 70

Conread position: 208-540
Cow position: chr25:24670170-24670503 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 51

Conread position: 209-525
Cow position: chr25:478203-477886 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 121, 48

Conread position: 213-530
Cow position: chr25:10180965-10180655 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 23

Conread position: 226-443
Cow position: chr25:36868379-36868171 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 107, 9

Conread position: 251-540
Cow position: chr25:19107802-19107524 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 76, 20

Conread position: 272-530
Cow position: chr25:2511965-2511708 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 169
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 59, 108

Conread position: 392-530
Cow position: chr25:14618804-14618944 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.