Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 13-454 |
| Cow position: | chr27:27743000-27742573 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 13-548 |
| Cow position: | chr27:18559146-18559670 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 342 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 14-325 |
| Cow position: | chr27:26033737-26034035 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 16-276 |
| Cow position: | chr27:9371885-9372141 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 18-322 |
| Cow position: | chr27:11470317-11470022 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-325 |
| Cow position: | chr27:21986269-21986578 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-443 |
| Cow position: | chr27:15272290-15272707 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-452 |
| Cow position: | chr27:23454766-23454339 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 18-452 |
| Cow position: | chr27:30476453-30476887 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr27:344146-344584 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 290, 45 |
| Conread position: | 18-465 |
| Cow position: | chr27:21283465-21283904 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 18-465 |
| Cow position: | chr27:27728707-27729145 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-487 |
| Cow position: | chr27:8201723-8201258 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 18-519 |
| Cow position: | chr27:5423997-5423516 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 329 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-519 |
| Cow position: | chr27:27053710-27054203 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 18-526 |
| Cow position: | chr27:26653694-26654171 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 18-546 |
| Cow position: | chr27:16428441-16427928 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 19-487 |
| Cow position: | chr27:13422378-13422841 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-530 |
| Cow position: | chr27:7418487-7417990 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 20-527 |
| Cow position: | chr27:25676653-25677128 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 25-548 |
| Cow position: | chr27:5269117-5268623 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 26-512 |
| Cow position: | chr27:17049667-17050145 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 40 |
| Conread position: | 26-530 |
| Cow position: | chr27:12173716-12173214 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 27-443 |
| Cow position: | chr27:8335178-8335581 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 30-464 |
| Cow position: | chr27:26945285-26945711 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 298 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 30-465 |
| Cow position: | chr27:10670806-10670383 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 31-530 |
| Cow position: | chr27:25874384-25873902 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 34-487 |
| Cow position: | chr27:20811188-20810739 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 54-530 |
| Cow position: | chr27:23793895-23794350 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 85 |
| Conread position: | 55-519 |
| Cow position: | chr27:22586583-22586123 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 222, 13 |
| Conread position: | 60-373 |
| Cow position: | chr27:14328534-14328227 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 61-526 |
| Cow position: | chr27:27501925-27501479 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 266, 31 |
| Conread position: | 154-557 |
| Cow position: | chr27:31546895-31547286 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 185, 108 |
| Conread position: | 169-525 |
| Cow position: | chr27:1845240-1845591 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 164, 89 |
| Conread position: | 170-529 |
| Cow position: | chr27:11490259-11489905 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 144, 87 |
| Conread position: | 173-465 |
| Cow position: | chr27:11349498-11349789 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 87 |
| Conread position: | 204-515 |
| Cow position: | chr27:1904008-1904314 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 207-487 |
| Cow position: | chr27:23200278-23200547 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 126, 55 |
Show alignments to all cow chromosomes.