Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 13-523 |
| Cow position: | chr28:17599145-17599650 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 14-533 |
| Cow position: | chr28:11256048-11256561 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 15-522 |
| Cow position: | chr28:30967042-30966539 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 16-455 |
| Cow position: | chr28:10529885-10530319 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 18-221 |
| Cow position: | chr28:32633601-32633799 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-443 |
| Cow position: | chr28:18559143-18559561 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 18-464 |
| Cow position: | chr28:1957196-1956756 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr28:16597980-16597539 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 48 |
| Conread position: | 18-465 |
| Cow position: | chr28:27478600-27478160 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr28:33768831-33768402 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 18-481 |
| Cow position: | chr28:25070679-25070223 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 18-515 |
| Cow position: | chr28:7314088-7314560 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 18-519 |
| Cow position: | chr28:5805096-5804605 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr28:7981125-7981620 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr28:29222454-29222946 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr28:29473819-29473330 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 18-519 |
| Cow position: | chr28:29806618-29807102 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 18-525 |
| Cow position: | chr28:10190414-10190907 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-530 |
| Cow position: | chr28:20310771-20310263 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 18-540 |
| Cow position: | chr28:24301535-24302048 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 18-545 |
| Cow position: | chr28:2222537-2223050 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 19-228 |
| Cow position: | chr28:8022534-8022738 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-465 |
| Cow position: | chr28:19186055-19185615 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-487 |
| Cow position: | chr28:13357136-13357590 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 19-519 |
| Cow position: | chr28:1199027-1198534 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-519 |
| Cow position: | chr28:5335973-5336466 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-432 |
| Cow position: | chr28:329981-330384 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 20-465 |
| Cow position: | chr28:14150814-14150380 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 20-465 |
| Cow position: | chr28:15429491-15429062 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 22-463 |
| Cow position: | chr28:5117716-5117291 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 370, 33 |
| Conread position: | 22-481 |
| Cow position: | chr28:22322826-22322384 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 25-464 |
| Cow position: | chr28:5825675-5825242 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 27-529 |
| Cow position: | chr28:32765015-32764548 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 30-289 |
| Cow position: | chr28:32730080-32730335 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 30-519 |
| Cow position: | chr28:29434985-29435468 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 317 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 31-530 |
| Cow position: | chr28:22201752-22201282 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 31-548 |
| Cow position: | chr28:17744520-17745030 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 339 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 32-148 |
| Cow position: | chr28:24244856-24244739 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 32-323 |
| Cow position: | chr28:23684197-23684467 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 32-530 |
| Cow position: | chr28:26984097-26984603 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 32-537 |
| Cow position: | chr28:757965-758464 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 32-551 |
| Cow position: | chr28:26796538-26796040 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 340 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 38-517 |
| Cow position: | chr28:32199213-32198750 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 51-549 |
| Cow position: | chr28:22090728-22091217 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 15 |
| Conread position: | 57-452 |
| Cow position: | chr28:6841424-6841804 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 238, 75 |
| Conread position: | 64-519 |
| Cow position: | chr28:10575233-10575681 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 74-525 |
| Cow position: | chr28:9917557-9918001 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 83 |
| Conread position: | 79-530 |
| Cow position: | chr28:33281673-33281231 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 88 |
| Conread position: | 83-530 |
| Cow position: | chr28:9419835-9420272 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 67 |
| Conread position: | 86-491 |
| Cow position: | chr28:29123444-29123827 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 53 |
| Conread position: | 115-548 |
| Cow position: | chr28:27029597-27030020 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 117-536 |
| Cow position: | chr28:23800988-23800582 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 202, 25 |
| Conread position: | 122-460 |
| Cow position: | chr28:13143189-13143507 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 320, 33 |
| Conread position: | 143-519 |
| Cow position: | chr28:10303549-10303177 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 187, 119 |
| Conread position: | 170-465 |
| Cow position: | chr28:34850834-34850546 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 276, 60 |
| Conread position: | 172-545 |
| Cow position: | chr28:10295473-10295117 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 159, 90 |
| Conread position: | 173-465 |
| Cow position: | chr28:24645141-24644852 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 22 |
| Conread position: | 173-487 |
| Cow position: | chr28:13523361-13523052 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 182-443 |
| Cow position: | chr28:34551455-34551714 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 191-443 |
| Cow position: | chr28:26937803-26937550 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 136, 78 |
| Conread position: | 198-455 |
| Cow position: | chr28:25166358-25166615 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 213-530 |
| Cow position: | chr28:25801888-25802197 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 147, 47 |
| Conread position: | 283-517 |
| Cow position: | chr28:1655958-1655733 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 44 |
Show alignments to all cow chromosomes.