Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 1-519
Cow position: chr29:25456477-25456992 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 337
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 148

Conread position: 5-520
Cow position: chr29:34332587-34333103 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 344
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 127, 30

Conread position: 13-326
Cow position: chr29:27619407-27619107 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 52

Conread position: 13-455
Cow position: chr29:7666453-7666883 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 297
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 54

Conread position: 13-514
Cow position: chr29:22949093-22949585 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 333
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 24

Conread position: 15-514
Cow position: chr29:20642285-20641799 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 20

Conread position: 17-461
Cow position: chr29:4001990-4001556 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 297
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 18

Conread position: 18-148
Cow position: chr29:13616083-13616212 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 32, 12

Conread position: 18-148
Cow position: chr29:41850231-41850361 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 46

Conread position: 18-321
Cow position: chr29:2482752-2483049 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 18-443
Cow position: chr29:10154838-10154418 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 46

Conread position: 18-452
Cow position: chr29:2744700-2745130 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-455
Cow position: chr29:11365818-11365389 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 294
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 17

Conread position: 18-463
Cow position: chr29:22935858-22935412 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 302
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 17

Conread position: 18-465
Cow position: chr29:2103645-2103205 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr29:5241199-5240759 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-465
Cow position: chr29:7811394-7811834 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 296
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr29:13077509-13077060 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 312
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 33, 17

Conread position: 18-465
Cow position: chr29:18364837-18365260 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 311
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 17

Conread position: 18-465
Cow position: chr29:35434441-35434001 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr29:41183377-41183818 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 49

Conread position: 18-471
Cow position: chr29:26216722-26216298 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 304
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 34, 17

Conread position: 18-480
Cow position: chr29:26968532-26968086 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-498
Cow position: chr29:32913314-32913788 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 18-513
Cow position: chr29:19565101-19565590 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 18-518
Cow position: chr29:32808171-32807673 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 329
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr29:727533-727039 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr29:1743303-1742814 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr29:19524337-19524829 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-523
Cow position: chr29:16065513-16065016 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 18-524
Cow position: chr29:11798586-11798088 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 18-528
Cow position: chr29:4490290-4489804 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 19

Conread position: 18-530
Cow position: chr29:11786801-11786301 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 51

Conread position: 18-553
Cow position: chr29:37451882-37451348 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-556
Cow position: chr29:93124-92612 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 359
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 70

Conread position: 19-231
Cow position: chr29:20904736-20904945 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 12, 47

Conread position: 20-465
Cow position: chr29:10652903-10652471 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 15

Conread position: 22-529
Cow position: chr29:30106060-30106544 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 13

Conread position: 22-545
Cow position: chr29:26263421-26262907 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 8

Conread position: 25-236
Cow position: chr29:19547324-19547529 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 10

Conread position: 25-465
Cow position: chr29:4875341-4875772 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 25-523
Cow position: chr29:38247187-38247678 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 40

Conread position: 27-453
Cow position: chr29:24266050-24265630 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 269
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 211, 41

Conread position: 29-304
Cow position: chr29:3047014-3047277 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 21, 36

Conread position: 30-329
Cow position: chr29:4260926-4260636 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 35

Conread position: 30-523
Cow position: chr29:29701417-29701903 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 330
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 300, 38

Conread position: 30-533
Cow position: chr29:41163113-41163596 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 325
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 23, 37

Conread position: 31-465
Cow position: chr29:2367249-2367675 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 28

Conread position: 31-533
Cow position: chr29:34120726-34121211 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 124

Conread position: 32-519
Cow position: chr29:40934392-40933923 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 37

Conread position: 34-524
Cow position: chr29:30517278-30517769 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 326
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 27, 22

Conread position: 34-530
Cow position: chr29:19617023-19617508 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 319
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 17, 31

Conread position: 38-465
Cow position: chr29:16347996-16347575 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 31

Conread position: 44-443
Cow position: chr29:34794080-34794473 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 265
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 128, 22

Conread position: 59-520
Cow position: chr29:31041740-31042196 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 299
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 214, 111

Conread position: 68-537
Cow position: chr29:36323783-36323320 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 109

Conread position: 73-331
Cow position: chr29:29599490-29599741 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 67, 0

Conread position: 85-431
Cow position: chr29:28621736-28622068 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 219
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 156, 8

Conread position: 104-465
Cow position: chr29:290122-290472 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 241
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 160, 49

Conread position: 150-542
Cow position: chr29:42940652-42940266 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 250
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 52

Conread position: 160-443
Cow position: chr29:23907692-23907402 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 189

Conread position: 169-463
Cow position: chr29:13128999-13129278 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 169, 18

Conread position: 184-452
Cow position: chr29:31786114-31785856 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 146, 74

Conread position: 187-495
Cow position: chr29:8512112-8511814 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 7, 49

Conread position: 202-513
Cow position: chr29:43626004-43626303 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 139, 55

Conread position: 210-481
Cow position: chr29:34390517-34390776 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 131, 47

Conread position: 218-498
Cow position: chr29:27687209-27686940 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 258-524
Cow position: chr29:22269148-22268883 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 137, 69

Conread position: 273-523
Cow position: chr29:35261422-35261180 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 55, 108

Conread position: 290-529
Cow position: chr29:9971840-9972084 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 158
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 105, 0

Show alignments to all cow chromosomes.