Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 13-210 |
| Cow position: | chr4:6443504-6443698 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 13-322 |
| Cow position: | chr4:68944606-68944907 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 13-482 |
| Cow position: | chr4:23888674-23889134 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 426, 16 |
| Conread position: | 13-520 |
| Cow position: | chr4:46492460-46491967 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 22 |
| Conread position: | 13-530 |
| Cow position: | chr4:45078546-45079057 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 15-463 |
| Cow position: | chr4:1365669-1366124 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 309 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 18-228 |
| Cow position: | chr4:65208408-65208614 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-231 |
| Cow position: | chr4:15282931-15282721 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 18-294 |
| Cow position: | chr4:42278684-42278947 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 18-302 |
| Cow position: | chr4:24002404-24002676 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-376 |
| Cow position: | chr4:60267557-60267928 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 18-451 |
| Cow position: | chr4:19007036-19006590 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 18-465 |
| Cow position: | chr4:8799925-8799500 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 18-465 |
| Cow position: | chr4:11201385-11200950 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-482 |
| Cow position: | chr4:42638796-42639234 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 18-487 |
| Cow position: | chr4:22850156-22850616 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 18-499 |
| Cow position: | chr4:12605360-12605831 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 18-518 |
| Cow position: | chr4:20790306-20789819 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 18-519 |
| Cow position: | chr4:61816881-61817375 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr4:63195060-63195550 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-520 |
| Cow position: | chr4:32409845-32410334 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 18-523 |
| Cow position: | chr4:27540186-27539687 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-526 |
| Cow position: | chr4:66901141-66900628 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-530 |
| Cow position: | chr4:42922664-42923161 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 18-530 |
| Cow position: | chr4:58484263-58483764 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-537 |
| Cow position: | chr4:19957550-19957037 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-537 |
| Cow position: | chr4:33069319-33069827 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-553 |
| Cow position: | chr4:49885774-49886299 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 19-519 |
| Cow position: | chr4:60579608-60580101 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-531 |
| Cow position: | chr4:55954887-55954394 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 20-511 |
| Cow position: | chr4:1984422-1983941 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 20-519 |
| Cow position: | chr4:17822051-17821559 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 20-519 |
| Cow position: | chr4:22905196-22904710 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 20-522 |
| Cow position: | chr4:19790634-19790148 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 20-530 |
| Cow position: | chr4:29897170-29897655 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 15 |
| Conread position: | 25-422 |
| Cow position: | chr4:488935-489316 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 30-499 |
| Cow position: | chr4:17477787-17477344 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 31-250 |
| Cow position: | chr4:54151757-54151981 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 31-275 |
| Cow position: | chr4:34044213-34044454 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 31-489 |
| Cow position: | chr4:16966796-16967244 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 31-514 |
| Cow position: | chr4:57557244-57556783 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 32-153 |
| Cow position: | chr4:53128698-53128819 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 32-460 |
| Cow position: | chr4:64986096-64985690 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 32-491 |
| Cow position: | chr4:36906604-36906163 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 27 |
| Conread position: | 33-522 |
| Cow position: | chr4:23380521-23381001 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 34-465 |
| Cow position: | chr4:60838713-60838260 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 34-515 |
| Cow position: | chr4:49907560-49907075 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 309 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 34-532 |
| Cow position: | chr4:3252047-3252533 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 39-493 |
| Cow position: | chr4:52253002-52252562 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 39-513 |
| Cow position: | chr4:54695533-54695996 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 39-519 |
| Cow position: | chr4:15802336-15802810 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 51-465 |
| Cow position: | chr4:61399871-61400270 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 151, 15 |
| Conread position: | 52-530 |
| Cow position: | chr4:5914820-5914345 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 52-530 |
| Cow position: | chr4:39233210-39233669 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 14 |
| Conread position: | 56-519 |
| Cow position: | chr4:60856245-60855789 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 10 |
| Conread position: | 60-519 |
| Cow position: | chr4:34224889-34224431 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 80-523 |
| Cow position: | chr4:45239809-45239373 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 250, 57 |
| Conread position: | 82-530 |
| Cow position: | chr4:65207008-65207442 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 108-519 |
| Cow position: | chr4:34209526-34209127 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 108-519 |
| Cow position: | chr4:67767852-67767448 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 226, 32 |
| Conread position: | 121-524 |
| Cow position: | chr4:24020710-24021101 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 202, 30 |
| Conread position: | 134-421 |
| Cow position: | chr4:8994550-8994264 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 193, 26 |
| Conread position: | 143-525 |
| Cow position: | chr4:22361564-22361936 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 170-465 |
| Cow position: | chr4:57573646-57573356 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 152, 25 |
| Conread position: | 171-501 |
| Cow position: | chr4:64180708-64181031 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 159, 86 |
| Conread position: | 172-530 |
| Cow position: | chr4:61235778-61236131 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 283, 86 |
| Conread position: | 174-520 |
| Cow position: | chr4:51980520-51980180 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 157, 91 |
| Conread position: | 194-465 |
| Cow position: | chr4:20630763-20630499 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 200-519 |
| Cow position: | chr4:7779742-7779429 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 208-530 |
| Cow position: | chr4:47079077-47079386 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 225-529 |
| Cow position: | chr4:38972943-38972643 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 164, 34 |
| Conread position: | 274-553 |
| Cow position: | chr4:32000833-32000551 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 79 |
Show alignments to all cow chromosomes.