Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 13-236
Cow position: chr5:21784159-21784377 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 22

Conread position: 13-497
Cow position: chr5:50189561-50189096 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 317
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 22

Conread position: 13-530
Cow position: chr5:70771756-70771270 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 16

Conread position: 18-144
Cow position: chr5:34232322-34232199 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 32, 12

Conread position: 18-203
Cow position: chr5:63388346-63388165 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 30, 12

Conread position: 18-213
Cow position: chr5:40050353-40050543 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 33, 17

Conread position: 18-230
Cow position: chr5:60371425-60371626 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 18-294
Cow position: chr5:48238852-48239118 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 18-320
Cow position: chr5:13205777-13206077 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 32, 17

Conread position: 18-322
Cow position: chr5:29827651-29827354 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 12

Conread position: 18-322
Cow position: chr5:32339337-32339646 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 64, 17

Conread position: 18-322
Cow position: chr5:56931268-56931566 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-325
Cow position: chr5:48574180-48574477 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 31, 19

Conread position: 18-443
Cow position: chr5:27346845-27346420 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 18-452
Cow position: chr5:26335530-26335947 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 129, 16

Conread position: 18-464
Cow position: chr5:15677683-15677243 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 52

Conread position: 18-465
Cow position: chr5:41334205-41333772 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 295
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 32, 11

Conread position: 18-465
Cow position: chr5:45705629-45705193 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-465
Cow position: chr5:50728924-50728486 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 17

Conread position: 18-486
Cow position: chr5:55677486-55677032 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 18-495
Cow position: chr5:26402223-26402664 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 317
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 17

Conread position: 18-495
Cow position: chr5:34678493-34678030 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr5:709529-710022 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 336
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr5:4682878-4683371 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr5:39936724-39936229 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-523
Cow position: chr5:59771666-59771173 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 18-524
Cow position: chr5:51858687-51859200 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 345
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 100, 48

Conread position: 18-529
Cow position: chr5:14550980-14551482 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-530
Cow position: chr5:10096235-10096722 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 339
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 34, 10

Conread position: 18-530
Cow position: chr5:21220209-21220713 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 10

Conread position: 18-530
Cow position: chr5:34682740-34683242 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-542
Cow position: chr5:7498362-7498878 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-542
Cow position: chr5:35207859-35207349 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 342
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 17

Conread position: 19-276
Cow position: chr5:3582174-3581924 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 29, 11

Conread position: 20-448
Cow position: chr5:28224058-28223638 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 279
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 35, 15

Conread position: 20-464
Cow position: chr5:45284003-45284436 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 299
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 30, 15

Conread position: 20-519
Cow position: chr5:14557834-14558329 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 22-465
Cow position: chr5:26096889-26096454 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 22-492
Cow position: chr5:71064172-71063710 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 46

Conread position: 22-523
Cow position: chr5:24221596-24221120 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 25-493
Cow position: chr5:19211155-19211614 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 42

Conread position: 25-519
Cow position: chr5:34669479-34669960 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 25-524
Cow position: chr5:16909302-16909782 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 327
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 27, 10

Conread position: 29-442
Cow position: chr5:44359482-44359103 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 23, 35

Conread position: 29-519
Cow position: chr5:28037692-28037222 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 320
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 140, 26

Conread position: 29-523
Cow position: chr5:59303694-59304160 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 36

Conread position: 30-465
Cow position: chr5:57125616-57125194 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 30-523
Cow position: chr5:46625668-46626152 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 30-529
Cow position: chr5:49912633-49912123 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 13

Conread position: 30-530
Cow position: chr5:33793473-33792998 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 21

Conread position: 31-518
Cow position: chr5:7140495-7140966 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 326
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 22, 77

Conread position: 32-294
Cow position: chr5:61361561-61361818 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 33

Conread position: 32-458
Cow position: chr5:21592768-21592351 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 286
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 20, 32

Conread position: 32-518
Cow position: chr5:51074527-51074999 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 42

Conread position: 32-519
Cow position: chr5:37715009-37715494 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 323
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 37

Conread position: 32-524
Cow position: chr5:32260886-32261358 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 39

Conread position: 32-530
Cow position: chr5:15122705-15123176 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 333
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 326, 38

Conread position: 32-530
Cow position: chr5:62143350-62143844 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 328
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 19, 33

Conread position: 33-443
Cow position: chr5:12640645-12641047 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 273
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 34

Conread position: 33-519
Cow position: chr5:69753011-69753498 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 320
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 38

Conread position: 34-530
Cow position: chr5:28528738-28529202 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 329
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 297, 32

Conread position: 35-514
Cow position: chr5:57363194-57363662 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 325
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 18, 61

Conread position: 36-518
Cow position: chr5:54170371-54169902 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 307
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 34

Conread position: 38-480
Cow position: chr5:70349013-70348579 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 30

Conread position: 38-487
Cow position: chr5:32614443-32614886 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 29

Conread position: 39-523
Cow position: chr5:48224988-48225451 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 42-524
Cow position: chr5:28374902-28375370 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 27

Conread position: 48-494
Cow position: chr5:34533209-34532769 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 51-455
Cow position: chr5:72172592-72172194 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 86, 15

Conread position: 59-530
Cow position: chr5:22857045-22857515 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 306
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 83, 29

Conread position: 60-530
Cow position: chr5:51070761-51070300 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 32

Conread position: 70-465
Cow position: chr5:47601335-47600950 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 265
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 369, 79

Conread position: 71-530
Cow position: chr5:26186232-26186682 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 303
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 83, 10

Conread position: 74-465
Cow position: chr5:52040921-52041302 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 11, 70

Conread position: 89-528
Cow position: chr5:21184777-21185213 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 44

Conread position: 109-514
Cow position: chr5:48408925-48409314 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 61, 42

Conread position: 169-518
Cow position: chr5:34285015-34285355 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 160, 22

Conread position: 171-523
Cow position: chr5:53148808-53149145 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 117, 69

Conread position: 173-519
Cow position: chr5:29559060-29558720 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 223
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 206, 50

Conread position: 173-541
Cow position: chr5:3695803-3695454 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 249
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 154, 61

Conread position: 174-495
Cow position: chr5:6741165-6741489 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 161, 86

Conread position: 191-433
Cow position: chr5:28700485-28700716 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 191-556
Cow position: chr5:54658183-54658541 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 240
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 143, 74

Conread position: 193-526
Cow position: chr5:38379438-38379114 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 225
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 215, 24

Conread position: 201-553
Cow position: chr5:52228923-52229257 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 234
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 243, 31

Conread position: 210-519
Cow position: chr5:44617580-44617274 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 202
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 121, 52

Conread position: 226-530
Cow position: chr5:40896931-40897234 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 203
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 129, 30

Conread position: 240-530
Cow position: chr5:51767122-51767409 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 206, 5

Conread position: 274-514
Cow position: chr5:62384751-62384512 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 44

Conread position: 276-519
Cow position: chr5:18465905-18465670 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 395-523
Cow position: chr5:69448995-69449122 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 44, 114

Conread position: 403-548
Cow position: chr5:51818823-51818675 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 106

Show alignments to all cow chromosomes.