Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 5-530
Cow position: chr7:26022626-26022129 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 337
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 47, 30

Conread position: 13-379
Cow position: chr7:21564690-21564338 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 247, 16

Conread position: 14-465
Cow position: chr7:42840114-42839676 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 303
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 15

Conread position: 15-489
Cow position: chr7:59558537-59558996 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 14

Conread position: 16-144
Cow position: chr7:24213451-24213324 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 14

Conread position: 18-179
Cow position: chr7:34428175-34428017 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 12

Conread position: 18-213
Cow position: chr7:52752284-52752475 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 17

Conread position: 18-252
Cow position: chr7:25703609-25703844 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 45

Conread position: 18-301
Cow position: chr7:51473208-51473492 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 25

Conread position: 18-302
Cow position: chr7:33063076-33063354 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-315
Cow position: chr7:10902264-10902555 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 17

Conread position: 18-322
Cow position: chr7:8785581-8785270 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 32, 12

Conread position: 18-325
Cow position: chr7:55458364-55458660 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 17

Conread position: 18-326
Cow position: chr7:35753193-35753488 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 33, 19

Conread position: 18-428
Cow position: chr7:34412672-34413072 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 47

Conread position: 18-443
Cow position: chr7:3027311-3027724 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 281
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 37, 17

Conread position: 18-451
Cow position: chr7:68870295-68869878 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 292
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 328, 19

Conread position: 18-452
Cow position: chr7:4452216-4451791 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 19

Conread position: 18-453
Cow position: chr7:19263787-19264208 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 287
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 17

Conread position: 18-453
Cow position: chr7:23681776-23682200 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr7:1366841-1367282 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr7:67816505-67816056 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 303
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 32, 49

Conread position: 18-495
Cow position: chr7:50052175-50052654 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 47

Conread position: 18-513
Cow position: chr7:64406159-64405674 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-514
Cow position: chr7:4520514-4520012 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 29

Conread position: 18-519
Cow position: chr7:3633903-3634386 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 50

Conread position: 18-519
Cow position: chr7:14358146-14358663 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 18-519
Cow position: chr7:31638381-31637887 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 17

Conread position: 18-524
Cow position: chr7:43415143-43415637 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 18-526
Cow position: chr7:19096447-19096943 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-530
Cow position: chr7:48859894-48860389 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-532
Cow position: chr7:42296455-42296959 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 337
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 17

Conread position: 18-537
Cow position: chr7:27713436-27712926 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 18-537
Cow position: chr7:31446593-31447091 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 340
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 36, 19

Conread position: 18-542
Cow position: chr7:27552085-27552591 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 333
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 421, 50

Conread position: 19-443
Cow position: chr7:57517487-57517073 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-452
Cow position: chr7:62394629-62394206 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 18

Conread position: 19-458
Cow position: chr7:19456756-19457182 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 293
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 29, 16

Conread position: 19-524
Cow position: chr7:22632672-22633169 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 331
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 33, 48

Conread position: 19-532
Cow position: chr7:42593695-42594203 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 20-236
Cow position: chr7:53986372-53986583 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 29, 15

Conread position: 20-424
Cow position: chr7:42494939-42495334 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 20-443
Cow position: chr7:42334976-42334562 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 280
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 34, 15

Conread position: 20-487
Cow position: chr7:24741268-24741722 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 419, 15

Conread position: 20-512
Cow position: chr7:28536571-28536097 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 318
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 32, 75

Conread position: 20-523
Cow position: chr7:34083288-34082785 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 22-221
Cow position: chr7:62048328-62048519 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 163
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 28, 13

Conread position: 22-526
Cow position: chr7:32283526-32283034 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 334
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 13

Conread position: 25-514
Cow position: chr7:12506478-12506000 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 25-516
Cow position: chr7:1399813-1399329 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 10

Conread position: 27-491
Cow position: chr7:47046065-47045610 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 40

Conread position: 27-529
Cow position: chr7:1215698-1215189 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 40

Conread position: 28-488
Cow position: chr7:5333880-5334313 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 318
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 24, 41

Conread position: 29-465
Cow position: chr7:41475192-41474770 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 38

Conread position: 30-334
Cow position: chr7:19604680-19604974 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 13

Conread position: 30-499
Cow position: chr7:68929126-68928670 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 309
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 38

Conread position: 30-523
Cow position: chr7:52383380-52383858 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 42

Conread position: 30-530
Cow position: chr7:4695734-4695264 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 63

Conread position: 31-435
Cow position: chr7:5250335-5250724 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 277
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 19, 36

Conread position: 31-526
Cow position: chr7:20105423-20105902 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 36

Conread position: 32-326
Cow position: chr7:44304149-44304446 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 210
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 33

Conread position: 32-455
Cow position: chr7:18893885-18894289 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 32

Conread position: 32-481
Cow position: chr7:44523395-44523848 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 12

Conread position: 32-492
Cow position: chr7:18755092-18755536 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 299
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 35

Conread position: 32-514
Cow position: chr7:27569544-27570017 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 319
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 35

Conread position: 40-236
Cow position: chr7:36304422-36304613 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 34

Conread position: 40-530
Cow position: chr7:36096872-36096387 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 41-523
Cow position: chr7:19466667-19467142 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 315
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 26

Conread position: 41-524
Cow position: chr7:30601511-30601065 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 311
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 23

Conread position: 49-489
Cow position: chr7:23240194-23239774 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 51-519
Cow position: chr7:23457199-23457655 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 303
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 281, 15

Conread position: 65-523
Cow position: chr7:49069832-49070277 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 304
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 107, 75

Conread position: 68-491
Cow position: chr7:54189646-54190055 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 298
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 87, 30

Conread position: 70-519
Cow position: chr7:981793-982235 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 68

Conread position: 77-488
Cow position: chr7:36241705-36241309 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 275
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 290, 59

Conread position: 81-519
Cow position: chr7:30172465-30172888 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 276
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 91, 69

Conread position: 82-434
Cow position: chr7:35899069-35899411 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 238
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 85

Conread position: 94-530
Cow position: chr7:51942026-51941603 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 285
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 66

Conread position: 100-530
Cow position: chr7:34076965-34076537 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 296
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 10

Conread position: 101-452
Cow position: chr7:59148373-59148036 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 227
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 294, 55

Conread position: 118-453
Cow position: chr7:37069861-37069540 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 227
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 327, 46

Conread position: 121-529
Cow position: chr7:26129777-26130174 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 22, 36

Conread position: 156-464
Cow position: chr7:34668885-34668592 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 84

Conread position: 169-464
Cow position: chr7:28162779-28162487 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 162, 56

Conread position: 169-557
Cow position: chr7:34678209-34678583 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 263
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 162, 66

Conread position: 170-481
Cow position: chr7:16845801-16845498 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 203
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 167, 87

Conread position: 171-514
Cow position: chr7:49743826-49743485 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 160, 86

Conread position: 172-519
Cow position: chr7:13237906-13238246 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 207, 85

Conread position: 173-530
Cow position: chr7:21877021-21877374 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 158, 15

Conread position: 182-519
Cow position: chr7:33962688-33963021 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 235
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 81

Conread position: 194-530
Cow position: chr7:29748715-29748389 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 63, 0

Conread position: 226-514
Cow position: chr7:40186340-40186625 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 34

Conread position: 226-530
Cow position: chr7:699154-698856 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 31

Conread position: 242-492
Cow position: chr7:35806153-35805910 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 109, 17

Conread position: 258-517
Cow position: chr7:29827964-29827704 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 71, 103

Conread position: 258-528
Cow position: chr7:9857142-9857405 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 78

Conread position: 284-519
Cow position: chr7:12317425-12317652 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.