Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 5-537
Cow position: chr8:52564476-52564994 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 344
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 30

Conread position: 6-514
Cow position: chr8:9671511-9671014 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 332
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 119, 41

Conread position: 13-375
Cow position: chr8:42152107-42152478 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 37, 15

Conread position: 13-465
Cow position: chr8:19546385-19545939 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 54

Conread position: 13-493
Cow position: chr8:33855849-33855386 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 314
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 43, 34

Conread position: 13-498
Cow position: chr8:29878115-29878590 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 13-530
Cow position: chr8:19869110-19868594 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 336
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 38, 15

Conread position: 15-464
Cow position: chr8:30440468-30440890 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 17-443
Cow position: chr8:46624445-46624872 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 286
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 18

Conread position: 17-524
Cow position: chr8:27534863-27535346 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 318
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 32, 18

Conread position: 18-157
Cow position: chr8:19998500-19998638 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 17

Conread position: 18-238
Cow position: chr8:49586265-49586475 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 17

Conread position: 18-288
Cow position: chr8:1169705-1169968 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 32, 24

Conread position: 18-307
Cow position: chr8:16297176-16297458 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 32, 12

Conread position: 18-327
Cow position: chr8:49720718-49720401 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 32, 47

Conread position: 18-335
Cow position: chr8:36055824-36056134 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 19

Conread position: 18-435
Cow position: chr8:34483257-34483654 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-443
Cow position: chr8:50745658-50746074 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 279
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 17

Conread position: 18-447
Cow position: chr8:19362218-19361792 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 288
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 34, 17

Conread position: 18-452
Cow position: chr8:10970428-10970000 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 16

Conread position: 18-460
Cow position: chr8:47656877-47657313 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-464
Cow position: chr8:28229886-28230325 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-465
Cow position: chr8:4453503-4453056 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 143

Conread position: 18-465
Cow position: chr8:37535055-37534615 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 307
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 48, 128

Conread position: 18-465
Cow position: chr8:42117388-42116948 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-465
Cow position: chr8:45151620-45152060 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 304
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 51

Conread position: 18-465
Cow position: chr8:61522081-61521635 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 309
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 32, 19

Conread position: 18-487
Cow position: chr8:42457284-42456831 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 49

Conread position: 18-519
Cow position: chr8:13930904-13931397 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-519
Cow position: chr8:28326269-28326771 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 341
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 17

Conread position: 18-519
Cow position: chr8:32967153-32966666 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-532
Cow position: chr8:30418659-30418150 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-554
Cow position: chr8:7104872-7105392 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 351
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 32, 17

Conread position: 18-584
Cow position: chr8:27152401-27152944 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 368
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 17

Conread position: 19-231
Cow position: chr8:21220641-21220434 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 11

Conread position: 19-465
Cow position: chr8:18057318-18056879 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-465
Cow position: chr8:39191867-39192313 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 18

Conread position: 19-519
Cow position: chr8:5196149-5195656 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr8:7426883-7427375 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr8:50799786-50800279 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 20-494
Cow position: chr8:21992920-21992463 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 47

Conread position: 20-529
Cow position: chr8:36921429-36920928 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 342
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 30, 10

Conread position: 24-523
Cow position: chr8:33173964-33174442 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 11

Conread position: 25-252
Cow position: chr8:44559483-44559707 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 40

Conread position: 25-437
Cow position: chr8:16685092-16685489 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 10

Conread position: 25-465
Cow position: chr8:33993745-33993317 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 12

Conread position: 25-465
Cow position: chr8:47679020-47678590 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 25-524
Cow position: chr8:9995480-9994990 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 29-528
Cow position: chr8:18457758-18457277 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 327
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 38

Conread position: 30-283
Cow position: chr8:35584011-35584259 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 20, 35

Conread position: 30-488
Cow position: chr8:22281884-22281454 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 314
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 16, 28

Conread position: 30-519
Cow position: chr8:6076957-6077431 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 324
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 38

Conread position: 31-432
Cow position: chr8:55026532-55026150 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 36

Conread position: 31-437
Cow position: chr8:25379169-25379557 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 34

Conread position: 31-465
Cow position: chr8:72995-73427 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 36

Conread position: 31-465
Cow position: chr8:37122527-37122098 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 280
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 21, 39

Conread position: 31-488
Cow position: chr8:12814413-12813964 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 35

Conread position: 31-524
Cow position: chr8:12661171-12661640 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 36

Conread position: 31-527
Cow position: chr8:47949964-47949495 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 334
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 36

Conread position: 32-146
Cow position: chr8:20204785-20204899 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 33

Conread position: 32-225
Cow position: chr8:56030870-56031060 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 33

Conread position: 32-327
Cow position: chr8:51470578-51470849 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 18, 33

Conread position: 32-452
Cow position: chr8:31624917-31624510 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 35

Conread position: 32-455
Cow position: chr8:37552181-37552593 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 19, 35

Conread position: 32-492
Cow position: chr8:24671357-24671806 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 296
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 34

Conread position: 32-519
Cow position: chr8:28982478-28982939 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 319
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 20, 28

Conread position: 32-530
Cow position: chr8:52000346-51999877 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 35

Conread position: 33-527
Cow position: chr8:37502303-37501824 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 33-527
Cow position: chr8:37504499-37504023 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 34-465
Cow position: chr8:11117935-11118360 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 34-519
Cow position: chr8:35183528-35183057 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 317
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 26

Conread position: 37-443
Cow position: chr8:22153474-22153864 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 269
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 37

Conread position: 40-467
Cow position: chr8:56753409-56752988 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 290
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 8, 29

Conread position: 44-465
Cow position: chr8:38394453-38394042 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 278
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 129, 22

Conread position: 76-529
Cow position: chr8:38385696-38385265 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 300
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 196, 16

Conread position: 79-500
Cow position: chr8:11301391-11300980 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 257
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 323, 88

Conread position: 88-519
Cow position: chr8:54156642-54156226 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 292
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 245, 62

Conread position: 99-444
Cow position: chr8:59657118-59657459 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 218
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 249, 55

Conread position: 110-529
Cow position: chr8:47578907-47579325 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 287
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 44, 158

Conread position: 143-519
Cow position: chr8:39141561-39141188 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 191, 119

Conread position: 144-455
Cow position: chr8:20007219-20007521 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 32, 56

Conread position: 169-452
Cow position: chr8:49397007-49397271 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 161, 28

Conread position: 169-523
Cow position: chr8:18576545-18576881 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 244
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 162, 27

Conread position: 170-524
Cow position: chr8:741609-741949 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 230
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 87, 0

Conread position: 177-523
Cow position: chr8:39048440-39048787 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 232
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 150, 51

Conread position: 183-519
Cow position: chr8:7682151-7682484 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 221
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 143, 62

Conread position: 184-540
Cow position: chr8:31222964-31222614 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 153, 73

Conread position: 202-494
Cow position: chr8:47676686-47676398 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 195
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 33

Conread position: 206-487
Cow position: chr8:28336155-28336432 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 133, 51

Conread position: 263-528
Cow position: chr8:36957158-36957411 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 67, 27

Conread position: 370-524
Cow position: chr8:45445655-45445502 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 8

Conread position: 389-523
Cow position: chr8:38015645-38015779 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 122

Show alignments to all cow chromosomes.