Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 7-465 |
| Cow position: | chr9:27898728-27898279 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 10-465 |
| Cow position: | chr9:1517081-1516627 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 64 |
| Conread position: | 13-464 |
| Cow position: | chr9:3997077-3997519 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-465 |
| Cow position: | chr9:60590479-60590040 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 13-523 |
| Cow position: | chr9:8728033-8727538 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 15-472 |
| Cow position: | chr9:43642957-43643398 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 17-525 |
| Cow position: | chr9:62630700-62630216 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 154, 18 |
| Conread position: | 18-151 |
| Cow position: | chr9:12566818-12566948 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 18-210 |
| Cow position: | chr9:28984029-28984217 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-231 |
| Cow position: | chr9:48017367-48017156 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-301 |
| Cow position: | chr9:36506805-36506526 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 18-334 |
| Cow position: | chr9:25238726-25239034 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 18-424 |
| Cow position: | chr9:58615004-58615401 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-432 |
| Cow position: | chr9:19380083-19380480 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 313, 17 |
| Conread position: | 18-452 |
| Cow position: | chr9:12162290-12161860 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-453 |
| Cow position: | chr9:14343384-14343807 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-465 |
| Cow position: | chr9:3807283-3806844 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr9:9016762-9016324 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr9:13181600-13181164 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 18-465 |
| Cow position: | chr9:30891550-30891113 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-465 |
| Cow position: | chr9:40142669-40143103 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr9:53531383-53530952 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 18-465 |
| Cow position: | chr9:56528906-56528467 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr9:771558-772051 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr9:17634173-17633684 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-519 |
| Cow position: | chr9:28786032-28785541 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr9:47045638-47045144 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr9:58674212-58674711 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-523 |
| Cow position: | chr9:3932424-3932920 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 48 |
| Conread position: | 18-525 |
| Cow position: | chr9:33658938-33659431 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-527 |
| Cow position: | chr9:20988985-20988484 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-528 |
| Cow position: | chr9:52038041-52037539 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-529 |
| Cow position: | chr9:21741784-21742285 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-540 |
| Cow position: | chr9:56562435-56561927 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 27 |
| Conread position: | 19-471 |
| Cow position: | chr9:31361483-31361930 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-519 |
| Cow position: | chr9:16639963-16639471 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-519 |
| Cow position: | chr9:35564849-35565342 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-228 |
| Cow position: | chr9:25969806-25970011 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 20-311 |
| Cow position: | chr9:27449994-27450270 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 20-329 |
| Cow position: | chr9:8951366-8951666 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 20-519 |
| Cow position: | chr9:57300898-57301391 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 20-526 |
| Cow position: | chr9:34553566-34554049 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 20-537 |
| Cow position: | chr9:9558438-9558946 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 22-325 |
| Cow position: | chr9:63654647-63654341 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 22-501 |
| Cow position: | chr9:50689580-50689112 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 22-537 |
| Cow position: | chr9:1997591-1998120 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 25-322 |
| Cow position: | chr9:49964363-49964655 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 25-430 |
| Cow position: | chr9:23438368-23437979 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 26-293 |
| Cow position: | chr9:9458828-9459091 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 29-489 |
| Cow position: | chr9:59197528-59197077 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 30-432 |
| Cow position: | chr9:26478024-26478418 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 30-465 |
| Cow position: | chr9:10004204-10004629 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 30-487 |
| Cow position: | chr9:13186259-13185824 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 31-228 |
| Cow position: | chr9:21840604-21840801 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 31-530 |
| Cow position: | chr9:9889811-9889318 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 32-273 |
| Cow position: | chr9:42930902-42931131 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 32-443 |
| Cow position: | chr9:7619547-7619155 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 32-519 |
| Cow position: | chr9:61520018-61519550 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 35-465 |
| Cow position: | chr9:30804064-30803649 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 38-517 |
| Cow position: | chr9:62536189-62535697 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 40-481 |
| Cow position: | chr9:49512157-49512582 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 41-465 |
| Cow position: | chr9:62733530-62733928 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 55-531 |
| Cow position: | chr9:43537989-43538459 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 73-508 |
| Cow position: | chr9:44516196-44516608 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 67 |
| Conread position: | 73-558 |
| Cow position: | chr9:9634294-9633817 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 86-465 |
| Cow position: | chr9:3411276-3411645 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 118, 65 |
| Conread position: | 101-519 |
| Cow position: | chr9:28703069-28702646 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 102-518 |
| Cow position: | chr9:4553402-4552994 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 107-519 |
| Cow position: | chr9:39032980-39032563 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 209, 49 |
| Conread position: | 108-530 |
| Cow position: | chr9:32738931-32738516 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 152-465 |
| Cow position: | chr9:53641256-53641563 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 287, 17 |
| Conread position: | 162-529 |
| Cow position: | chr9:865389-865750 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 283, 83 |
| Conread position: | 171-512 |
| Cow position: | chr9:20749049-20749386 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 268, 42 |
| Conread position: | 174-465 |
| Cow position: | chr9:33999771-33999482 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 174, 83 |
| Conread position: | 182-465 |
| Cow position: | chr9:27107049-27107329 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 152, 76 |
| Conread position: | 182-488 |
| Cow position: | chr9:18831263-18830958 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 190-519 |
| Cow position: | chr9:63563942-63563617 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 55 |
| Conread position: | 197-530 |
| Cow position: | chr9:50727721-50728033 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 245, 60 |
| Conread position: | 201-529 |
| Cow position: | chr9:13117089-13117398 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 202-523 |
| Cow position: | chr9:6328903-6329214 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 228-530 |
| Cow position: | chr9:49151145-49151438 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 240-494 |
| Cow position: | chr9:13527760-13528015 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 389-564 |
| Cow position: | chr9:55891053-55890875 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 122 |
Show alignments to all cow chromosomes.