Cow genome map
| Conread name: | unkn-MI-P-NA-afr-g-11-1-UM.s1 |
| Conread position: | 1-448 |
| Cow position: | chrX:21589819-21589345 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 250 |
| Conread position: | 3-125 |
| Cow position: | chrX:10416609-10416730 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 3-449 |
| Cow position: | chrX:41888132-41888612 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 57 |
| Conread position: | 5-426 |
| Cow position: | chrX:21269210-21269656 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 5-444 |
| Cow position: | chrX:6872225-6872693 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 5-444 |
| Cow position: | chrX:29097041-29096588 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 5-449 |
| Cow position: | chrX:13416589-13417050 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 8-444 |
| Cow position: | chrX:15599811-15599346 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 402 |
| Conread position: | 10-450 |
| Cow position: | chrX:2011855-2012293 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 11-444 |
| Cow position: | chrX:3084286-3084742 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 11-444 |
| Cow position: | chrX:7752740-7752279 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 11-444 |
| Cow position: | chrX:29172923-29173381 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 11-449 |
| Cow position: | chrX:15980119-15980582 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 12-441 |
| Cow position: | chrX:22816689-22816232 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 13-311 |
| Cow position: | chrX:21971656-21971358 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 262, 13 |
| Conread position: | 21-444 |
| Cow position: | chrX:23020160-23019709 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 101-443 |
| Cow position: | chrX:4797058-4796700 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 110-407 |
| Cow position: | chrX:28554335-28554037 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 204, 124 |
| Conread position: | 113-444 |
| Cow position: | chrX:2562136-2562477 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:2604769-2604428 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 113-444 |
| Cow position: | chrX:3420485-3420810 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-444 |
| Cow position: | chrX:5283055-5283397 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:5335764-5336106 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 113-444 |
| Cow position: | chrX:5394288-5394621 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:7482354-7482012 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:8480371-8480030 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:8588886-8588558 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 219, 181 |
| Conread position: | 113-444 |
| Cow position: | chrX:8962854-8963193 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:9126081-9125743 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:11422593-11422254 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:12287682-12288023 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 201, 44 |
| Conread position: | 113-444 |
| Cow position: | chrX:12353963-12353620 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 113-444 |
| Cow position: | chrX:12654040-12654382 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:12702982-12703324 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:13075976-13076317 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:13096550-13096891 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:16276368-16276029 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 113-444 |
| Cow position: | chrX:16362402-16362744 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:17477703-17478045 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-444 |
| Cow position: | chrX:20315340-20315682 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-444 |
| Cow position: | chrX:26399458-26399801 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-444 |
| Cow position: | chrX:28757773-28758115 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:29910703-29911045 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:29935317-29934981 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chrX:31186502-31186844 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-444 |
| Cow position: | chrX:32066443-32066782 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-444 |
| Cow position: | chrX:35530584-35530242 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 113-444 |
| Cow position: | chrX:37812884-37812542 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-444 |
| Cow position: | chrX:39563213-39563553 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 85, 271 |
| Conread position: | 113-449 |
| Cow position: | chrX:983384-983036 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-449 |
| Cow position: | chrX:5864116-5863769 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 113-449 |
| Cow position: | chrX:11148614-11148958 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 113-449 |
| Cow position: | chrX:20797689-20797350 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 162, 38 |
| Conread position: | 113-449 |
| Cow position: | chrX:22618577-22618924 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 120-449 |
| Cow position: | chrX:18659073-18659410 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 122-444 |
| Cow position: | chrX:971488-971155 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 122-444 |
| Cow position: | chrX:1834531-1834198 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 122-444 |
| Cow position: | chrX:9009048-9008718 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 122-449 |
| Cow position: | chrX:21341109-21340775 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 124-444 |
| Cow position: | chrX:27425615-27425940 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 191, 30 |
| Conread position: | 126-427 |
| Cow position: | chrX:30171124-30171436 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 110 |
| Conread position: | 143-449 |
| Cow position: | chrX:24324889-24325204 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 145-444 |
| Cow position: | chrX:11464313-11464622 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 145-444 |
| Cow position: | chrX:15178735-15179045 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 146-444 |
| Cow position: | chrX:10530874-10531178 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 146-444 |
| Cow position: | chrX:22611631-22611326 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 149-444 |
| Cow position: | chrX:27987141-27987442 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 153-450 |
| Cow position: | chrX:6249763-6250058 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 110 |
| Conread position: | 178-444 |
| Cow position: | chrX:20359394-20359671 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 193-444 |
| Cow position: | chrX:29793482-29793742 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 194-444 |
| Cow position: | chrX:12343583-12343334 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 172, 121 |
| Conread position: | 194-444 |
| Cow position: | chrX:30057773-30057512 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 199-444 |
| Cow position: | chrX:30173035-30173291 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 208-444 |
| Cow position: | chrX:24090021-24089782 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 159 |
| Conread position: | 236-450 |
| Cow position: | chrX:26427049-26427272 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 239-444 |
| Cow position: | chrX:506735-506951 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 244-448 |
| Cow position: | chrX:24377626-24377413 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 266-444 |
| Cow position: | chrX:30011608-30011419 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 278-449 |
| Cow position: | chrX:10416737-10416917 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 287-444 |
| Cow position: | chrX:7094146-7093978 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.