Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-216 |
| Cow position: | chr12:37351493-37351710 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-218 |
| Cow position: | chr12:43823575-43823358 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-201 |
| Cow position: | chr12:1285846-1285647 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-210 |
| Cow position: | chr12:23150359-23150564 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 2-215 |
| Cow position: | chr12:25137465-25137254 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr12:44158939-44159146 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr12:45527223-45527010 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-218 |
| Cow position: | chr12:20400953-20401169 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 3-123 |
| Cow position: | chr12:45463447-45463568 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-131 |
| Cow position: | chr12:33960646-33960518 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-141 |
| Cow position: | chr12:40509756-40509894 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 3-168 |
| Cow position: | chr12:10039172-10039337 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 141 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-174 |
| Cow position: | chr12:43611864-43612035 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 3-203 |
| Cow position: | chr12:27991630-27991433 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-204 |
| Cow position: | chr12:20250939-20251140 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-213 |
| Cow position: | chr12:35000957-35001159 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 3-215 |
| Cow position: | chr12:1893434-1893644 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 3-215 |
| Cow position: | chr12:12909024-12908815 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr12:13883137-13883349 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-215 |
| Cow position: | chr12:33166564-33166778 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr12:4382461-4382671 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 3-217 |
| Cow position: | chr12:12792335-12792129 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-233 |
| Cow position: | chr12:22879603-22879366 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 4-174 |
| Cow position: | chr12:45901572-45901404 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 4-213 |
| Cow position: | chr12:2862932-2862722 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 4-225 |
| Cow position: | chr12:26340505-26340723 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 4-225 |
| Cow position: | chr12:30361344-30361565 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 5-133 |
| Cow position: | chr12:44950730-44950858 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-205 |
| Cow position: | chr12:23884136-23883938 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 6-137 |
| Cow position: | chr12:14855186-14855056 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-181 |
| Cow position: | chr12:8304965-8304790 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 6-193 |
| Cow position: | chr12:7129249-7129435 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 152 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 6-196 |
| Cow position: | chr12:41692762-41692950 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 6-205 |
| Cow position: | chr12:27298319-27298518 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-211 |
| Cow position: | chr12:6773461-6773662 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-211 |
| Cow position: | chr12:9464239-9464032 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 7, 29 |
| Conread position: | 6-212 |
| Cow position: | chr12:12589181-12589397 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-213 |
| Cow position: | chr12:34082261-34082466 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr12:9477668-9477457 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-216 |
| Cow position: | chr12:9514535-9514745 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 6-219 |
| Cow position: | chr12:13995789-13996001 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-219 |
| Cow position: | chr12:14953966-14954176 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-224 |
| Cow position: | chr12:22194970-22194752 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-240 |
| Cow position: | chr12:42760649-42760416 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-132 |
| Cow position: | chr12:17327017-17327140 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-138 |
| Cow position: | chr12:7486349-7486480 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-147 |
| Cow position: | chr12:9795628-9795769 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-150 |
| Cow position: | chr12:30980373-30980518 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 7-183 |
| Cow position: | chr12:26879720-26879895 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-196 |
| Cow position: | chr12:6897263-6897460 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-198 |
| Cow position: | chr12:10798089-10798280 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-205 |
| Cow position: | chr12:24813376-24813573 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 7-214 |
| Cow position: | chr12:31787031-31786823 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-214 |
| Cow position: | chr12:43826024-43826230 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 171, 151 |
| Conread position: | 7-215 |
| Cow position: | chr12:2762838-2762639 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr12:24227775-24227979 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 7-215 |
| Cow position: | chr12:36505899-36505694 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr12:41611999-41612207 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr12:42135067-42135266 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-216 |
| Cow position: | chr12:27731196-27730987 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-216 |
| Cow position: | chr12:34891471-34891268 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 7-225 |
| Cow position: | chr12:45098403-45098180 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-244 |
| Cow position: | chr12:5266127-5266365 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 8-160 |
| Cow position: | chr12:33052035-33052186 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-204 |
| Cow position: | chr12:36248104-36248300 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 132, 140 |
| Conread position: | 8-214 |
| Cow position: | chr12:18101455-18101250 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 8-237 |
| Cow position: | chr12:8984433-8984664 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 9-122 |
| Cow position: | chr12:22477419-22477532 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-216 |
| Cow position: | chr12:23552292-23552498 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-226 |
| Cow position: | chr12:1033435-1033218 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 10-214 |
| Cow position: | chr12:13933879-13934082 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 10-215 |
| Cow position: | chr12:32741360-32741559 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 10-215 |
| Cow position: | chr12:37101186-37100971 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 10-217 |
| Cow position: | chr12:7870150-7870365 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 13-170 |
| Cow position: | chr12:41331355-41331197 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 15-215 |
| Cow position: | chr12:38244732-38244544 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 15-243 |
| Cow position: | chr12:31292228-31292454 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 182, 19 |
| Conread position: | 18-216 |
| Cow position: | chr12:10015721-10015523 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 35-221 |
| Cow position: | chr12:17039966-17039772 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 77-222 |
| Cow position: | chr12:19377293-19377438 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 101 |
Show alignments to all cow chromosomes.