Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-170 |
| Cow position: | chr14:7246486-7246654 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-215 |
| Cow position: | chr14:28794955-28795169 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 1-215 |
| Cow position: | chr14:44321614-44321402 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 1-218 |
| Cow position: | chr14:11520648-11520867 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-225 |
| Cow position: | chr14:44420403-44420626 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 1-243 |
| Cow position: | chr14:16852446-16852687 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-195 |
| Cow position: | chr14:44181846-44181654 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-214 |
| Cow position: | chr14:21214857-21215069 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 2-215 |
| Cow position: | chr14:12358851-12358639 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr14:30609534-30609322 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr14:34009569-34009793 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 2-236 |
| Cow position: | chr14:32007247-32007013 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 3-150 |
| Cow position: | chr14:221048-220901 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-151 |
| Cow position: | chr14:37477053-37477202 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-160 |
| Cow position: | chr14:40964473-40964316 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-162 |
| Cow position: | chr14:25830222-25830063 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-168 |
| Cow position: | chr14:32139017-32138852 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-170 |
| Cow position: | chr14:27572928-27573095 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 142 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 3-183 |
| Cow position: | chr14:15740807-15740984 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-198 |
| Cow position: | chr14:43102094-43102289 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-213 |
| Cow position: | chr14:8368688-8368480 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 3-213 |
| Cow position: | chr14:18150369-18150158 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-214 |
| Cow position: | chr14:23028959-23028748 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-214 |
| Cow position: | chr14:23707849-23707638 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr14:3716019-3716230 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr14:12072156-12072367 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 3-215 |
| Cow position: | chr14:15025460-15025669 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr14:16925289-16925089 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 3-215 |
| Cow position: | chr14:17150311-17150517 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 3-215 |
| Cow position: | chr14:22234095-22234305 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr14:24498502-24498722 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr14:26246090-26245879 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr14:21690782-21690993 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr14:33966639-33966426 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-218 |
| Cow position: | chr14:2044307-2044505 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-227 |
| Cow position: | chr14:22843411-22843644 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 4-159 |
| Cow position: | chr14:14876433-14876280 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 4-214 |
| Cow position: | chr14:7913804-7914015 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 4-215 |
| Cow position: | chr14:44111820-44111610 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 4-216 |
| Cow position: | chr14:11898893-11899105 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 5-134 |
| Cow position: | chr14:31799476-31799347 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-194 |
| Cow position: | chr14:15503002-15503191 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-203 |
| Cow position: | chr14:25791072-25790874 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-215 |
| Cow position: | chr14:5854785-5854575 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 6-102 |
| Cow position: | chr14:7501070-7500974 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-121 |
| Cow position: | chr14:19003337-19003452 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-131 |
| Cow position: | chr14:12003560-12003685 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-152 |
| Cow position: | chr14:50020084-50020230 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-155 |
| Cow position: | chr14:28133343-28133194 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 6-210 |
| Cow position: | chr14:6749589-6749787 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-213 |
| Cow position: | chr14:2852481-2852689 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-213 |
| Cow position: | chr14:10518329-10518536 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-214 |
| Cow position: | chr14:5047125-5046917 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr14:2457957-2458165 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr14:8612161-8612369 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr14:43775036-43775246 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 6-216 |
| Cow position: | chr14:38286908-38287116 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 6-217 |
| Cow position: | chr14:6829015-6828801 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-220 |
| Cow position: | chr14:6078261-6078475 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 6-222 |
| Cow position: | chr14:33172233-33172450 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-131 |
| Cow position: | chr14:47826339-47826465 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-142 |
| Cow position: | chr14:46728517-46728380 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 7-195 |
| Cow position: | chr14:29731804-29731992 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 7-203 |
| Cow position: | chr14:12964083-12963887 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-203 |
| Cow position: | chr14:20816754-20816949 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-214 |
| Cow position: | chr14:30436208-30436410 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 203, 102 |
| Conread position: | 7-215 |
| Cow position: | chr14:12183901-12183695 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-216 |
| Cow position: | chr14:29300599-29300815 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 8-131 |
| Cow position: | chr14:8430254-8430131 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-132 |
| Cow position: | chr14:19243016-19243139 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 9-134 |
| Cow position: | chr14:14974413-14974288 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 26 |
| Conread position: | 9-138 |
| Cow position: | chr14:12001187-12001058 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-158 |
| Cow position: | chr14:6356337-6356491 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-216 |
| Cow position: | chr14:22096449-22096242 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-219 |
| Cow position: | chr14:48420023-48420229 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 12-131 |
| Cow position: | chr14:35044150-35044032 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 15-215 |
| Cow position: | chr14:21273611-21273809 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 17-215 |
| Cow position: | chr14:15504757-15504957 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 17-215 |
| Cow position: | chr14:29836687-29836489 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 21-215 |
| Cow position: | chr14:12824647-12824458 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 12 |
Show alignments to all cow chromosomes.