Cow genome map

Conread name: unkn-SGD602702291.R1

Conread position: 1-170
Cow position: chr16:27300153-27300322 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 56, 32

Conread position: 1-214
Cow position: chr16:18045268-18045474 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 38, 33

Conread position: 1-216
Cow position: chr16:11644124-11643909 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 2-124
Cow position: chr16:52803726-52803602 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 31

Conread position: 2-170
Cow position: chr16:52222196-52222025 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 31

Conread position: 2-198
Cow position: chr16:38228317-38228512 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 155
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 31

Conread position: 2-213
Cow position: chr16:9964081-9963870 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 193, 175

Conread position: 2-215
Cow position: chr16:13608167-13607953 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 31

Conread position: 2-219
Cow position: chr16:36222740-36222957 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 31

Conread position: 3-122
Cow position: chr16:48888279-48888398 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 31

Conread position: 3-171
Cow position: chr16:22478302-22478470 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr16:11565507-11565305 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr16:23381267-23381469 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr16:30884838-30885039 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 29

Conread position: 3-211
Cow position: chr16:46432042-46432250 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 29

Conread position: 3-211
Cow position: chr16:51134661-51134455 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 30

Conread position: 3-213
Cow position: chr16:40217205-40216995 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-214
Cow position: chr16:12378458-12378661 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 36, 30

Conread position: 3-214
Cow position: chr16:43788666-43788448 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 36, 31

Conread position: 3-215
Cow position: chr16:46579780-46579992 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-215
Cow position: chr16:51986902-51986678 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr16:52411658-52411870 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 29

Conread position: 3-217
Cow position: chr16:8791308-8791523 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-217
Cow position: chr16:36295346-36295130 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 176

Conread position: 3-218
Cow position: chr16:1013664-1013878 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 36, 30

Conread position: 3-218
Cow position: chr16:7723327-7723543 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 0

Conread position: 3-220
Cow position: chr16:3238723-3238940 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 29

Conread position: 3-220
Cow position: chr16:12173762-12173975 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-224
Cow position: chr16:33107722-33107502 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 30

Conread position: 3-228
Cow position: chr16:27163401-27163627 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-235
Cow position: chr16:2003227-2003458 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 30

Conread position: 3-252
Cow position: chr16:23996605-23996854 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 36, 30

Conread position: 4-215
Cow position: chr16:360470-360681 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 4-216
Cow position: chr16:4387174-4387385 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 35, 28

Conread position: 4-220
Cow position: chr16:4536724-4536940 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 29

Conread position: 4-225
Cow position: chr16:15873051-15872828 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 5-205
Cow position: chr16:8203274-8203475 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 5-216
Cow position: chr16:52698837-52699043 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 34, 28

Conread position: 5-221
Cow position: chr16:49566403-49566618 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 6-110
Cow position: chr16:33890131-33890235 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 6-111
Cow position: chr16:2250321-2250425 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 6-131
Cow position: chr16:52491838-52491718 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 27

Conread position: 6-137
Cow position: chr16:17165564-17165695 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 6-137
Cow position: chr16:42931965-42932096 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 27

Conread position: 6-168
Cow position: chr16:2359778-2359941 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 33, 27

Conread position: 6-168
Cow position: chr16:20741446-20741285 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 27

Conread position: 6-211
Cow position: chr16:13018728-13018928 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 163
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 33, 27

Conread position: 6-212
Cow position: chr16:56681408-56681202 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 32, 26

Conread position: 6-213
Cow position: chr16:30797751-30797957 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-213
Cow position: chr16:41676766-41676969 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 164
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 33, 27

Conread position: 6-214
Cow position: chr16:18807413-18807212 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 25

Conread position: 6-214
Cow position: chr16:39482929-39483132 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr16:1777670-1777463 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr16:3118369-3118578 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 33, 23

Conread position: 6-215
Cow position: chr16:8175282-8175492 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 94, 0

Conread position: 6-215
Cow position: chr16:20570467-20570677 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 28

Conread position: 6-215
Cow position: chr16:30005892-30006104 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 27

Conread position: 6-216
Cow position: chr16:14471812-14471603 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 7-174
Cow position: chr16:13644614-13644447 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 26

Conread position: 7-206
Cow position: chr16:39704819-39704620 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-214
Cow position: chr16:23479568-23479365 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 26

Conread position: 7-214
Cow position: chr16:56266450-56266653 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 163
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr16:32117112-32116905 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-216
Cow position: chr16:38296808-38297014 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 32, 26

Conread position: 7-216
Cow position: chr16:55115842-55116050 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 7-217
Cow position: chr16:12407282-12407491 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-219
Cow position: chr16:13169118-13169329 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 27

Conread position: 8-191
Cow position: chr16:23459775-23459596 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 27

Conread position: 8-213
Cow position: chr16:12643751-12643952 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 25

Conread position: 8-214
Cow position: chr16:50870001-50870206 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 31, 25

Conread position: 8-218
Cow position: chr16:18471901-18472112 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 171

Conread position: 9-211
Cow position: chr16:9532107-9532309 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 28, 24

Conread position: 10-213
Cow position: chr16:24192996-24192787 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 29, 23

Conread position: 10-214
Cow position: chr16:23907250-23907454 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-215
Cow position: chr16:30349839-30349635 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 22

Conread position: 10-217
Cow position: chr16:30943079-30943294 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 170
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 43, 23

Conread position: 12-152
Cow position: chr16:55885046-55884907 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 132, 0

Conread position: 12-181
Cow position: chr16:20027828-20027659 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 21

Conread position: 17-131
Cow position: chr16:42358678-42358792 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 17-215
Cow position: chr16:11331500-11331695 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 22, 16

Conread position: 96-242
Cow position: chr16:3982448-3982594 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 82

Show alignments to all cow chromosomes.