Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-132 |
| Cow position: | chr17:25517059-25517190 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-198 |
| Cow position: | chr17:41345241-41345049 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-199 |
| Cow position: | chr17:23515938-23516137 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-215 |
| Cow position: | chr17:11426425-11426637 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-108 |
| Cow position: | chr17:21863016-21862910 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-214 |
| Cow position: | chr17:44792442-44792631 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-215 |
| Cow position: | chr17:28051555-28051342 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-215 |
| Cow position: | chr17:41686332-41686545 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr17:35104888-35104673 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr17:40485905-40485689 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-225 |
| Cow position: | chr17:34753885-34753661 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-234 |
| Cow position: | chr17:707185-707419 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 3-114 |
| Cow position: | chr17:20928949-20929061 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-160 |
| Cow position: | chr17:6883571-6883413 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-174 |
| Cow position: | chr17:38649906-38650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 3-198 |
| Cow position: | chr17:9803385-9803579 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 3-212 |
| Cow position: | chr17:41806156-41806366 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-213 |
| Cow position: | chr17:7579941-7579730 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-214 |
| Cow position: | chr17:9698104-9698316 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-214 |
| Cow position: | chr17:38452709-38452498 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr17:7746898-7746686 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-215 |
| Cow position: | chr17:18595771-18595980 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 3-215 |
| Cow position: | chr17:36428945-36429158 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 3-216 |
| Cow position: | chr17:16453359-16453572 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr17:18071249-18071038 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr17:24089935-24089722 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-224 |
| Cow position: | chr17:36497114-36496904 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 192, 60 |
| Conread position: | 3-237 |
| Cow position: | chr17:6269678-6269446 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 4-134 |
| Cow position: | chr17:20154952-20155083 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 5-206 |
| Cow position: | chr17:34854050-34854251 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-214 |
| Cow position: | chr17:9692369-9692589 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 5-214 |
| Cow position: | chr17:36318000-36317795 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-215 |
| Cow position: | chr17:43532374-43532583 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 5-216 |
| Cow position: | chr17:22455250-22455041 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 5-218 |
| Cow position: | chr17:25048246-25048458 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-223 |
| Cow position: | chr17:16281848-16282064 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 6, 29 |
| Conread position: | 6-107 |
| Cow position: | chr17:36449584-36449685 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-187 |
| Cow position: | chr17:9185985-9186167 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr17:7443481-7443691 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr17:13659462-13659254 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr17:34929762-34929975 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr17:40026993-40026788 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr17:8220501-8220291 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 6-216 |
| Cow position: | chr17:12569678-12569886 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 6-216 |
| Cow position: | chr17:31084711-31084501 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr17:32518250-32518462 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-223 |
| Cow position: | chr17:28979256-28979037 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-155 |
| Cow position: | chr17:34802805-34802656 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-191 |
| Cow position: | chr17:5888240-5888423 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 7-203 |
| Cow position: | chr17:596155-595975 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 7-212 |
| Cow position: | chr17:5892587-5892375 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr17:36681709-36681501 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr17:40666627-40666835 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-216 |
| Cow position: | chr17:32868331-32868538 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-221 |
| Cow position: | chr17:10411512-10411300 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 152, 13 |
| Conread position: | 7-236 |
| Cow position: | chr17:44704459-44704689 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 8-198 |
| Cow position: | chr17:28264688-28264499 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 8-215 |
| Cow position: | chr17:32980321-32980527 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-216 |
| Cow position: | chr17:8661263-8661470 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 8-217 |
| Cow position: | chr17:34292228-34292438 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 9-215 |
| Cow position: | chr17:31777438-31777644 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 10-121 |
| Cow position: | chr17:26853154-26853264 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 10-241 |
| Cow position: | chr17:1297339-1297087 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 12-215 |
| Cow position: | chr17:11399208-11399006 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 161 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 128, 135 |
| Conread position: | 13-215 |
| Cow position: | chr17:36334894-36335095 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 15-218 |
| Cow position: | chr17:39840842-39840641 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 15-223 |
| Cow position: | chr17:36076643-36076850 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 182, 18 |
| Conread position: | 16-131 |
| Cow position: | chr17:35549683-35549798 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-216 |
| Cow position: | chr17:36941796-36941996 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 20-150 |
| Cow position: | chr17:14747423-14747552 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 20-174 |
| Cow position: | chr17:20887936-20888090 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-214 |
| Cow position: | chr17:5832027-5832232 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 23-214 |
| Cow position: | chr17:20713657-20713847 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 23-215 |
| Cow position: | chr17:16192365-16192172 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 40-220 |
| Cow position: | chr17:45271796-45271977 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 47, 139 |
Show alignments to all cow chromosomes.