Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-193 |
| Cow position: | chr18:20354543-20354734 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 1-198 |
| Cow position: | chr18:18067732-18067534 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-214 |
| Cow position: | chr18:695813-695601 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 1-214 |
| Cow position: | chr18:9391766-9391545 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-214 |
| Cow position: | chr18:35342022-35342233 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-215 |
| Cow position: | chr18:19614137-19614354 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 1-215 |
| Cow position: | chr18:55736456-55736677 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-203 |
| Cow position: | chr18:4561010-4560810 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 2-206 |
| Cow position: | chr18:3897844-3898033 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-206 |
| Cow position: | chr18:48819923-48820126 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-215 |
| Cow position: | chr18:26503479-26503265 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr18:3730630-3730841 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr18:40891483-40891267 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 3-161 |
| Cow position: | chr18:23471998-23472153 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-203 |
| Cow position: | chr18:6294870-6295069 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 3-209 |
| Cow position: | chr18:28063833-28063626 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-214 |
| Cow position: | chr18:24917621-24917411 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 3-215 |
| Cow position: | chr18:18315065-18314856 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr18:19945308-19945099 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 3-215 |
| Cow position: | chr18:46101192-46100981 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr18:8162112-8162325 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr18:19933491-19933277 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 3-216 |
| Cow position: | chr18:31725383-31725176 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr18:43018441-43018651 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr18:50074983-50075203 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 3-216 |
| Cow position: | chr18:52568555-52568768 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 3-216 |
| Cow position: | chr18:54582940-54582729 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 3-217 |
| Cow position: | chr18:47692068-47692283 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 3-218 |
| Cow position: | chr18:40405086-40404874 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-220 |
| Cow position: | chr18:4913851-4914069 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-230 |
| Cow position: | chr18:17465851-17465624 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-232 |
| Cow position: | chr18:49999322-49999108 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 5-115 |
| Cow position: | chr18:32257294-32257184 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-200 |
| Cow position: | chr18:24014166-24014362 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 5-213 |
| Cow position: | chr18:32331481-32331690 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-214 |
| Cow position: | chr18:3333884-3334096 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 5-215 |
| Cow position: | chr18:4744550-4744340 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-131 |
| Cow position: | chr18:47518322-47518450 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 6-143 |
| Cow position: | chr18:32840804-32840944 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-198 |
| Cow position: | chr18:22883993-22883795 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-206 |
| Cow position: | chr18:40864001-40864210 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-212 |
| Cow position: | chr18:19757433-19757227 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr18:21094774-21094983 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr18:39761454-39761667 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 6-215 |
| Cow position: | chr18:39801989-39801780 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-216 |
| Cow position: | chr18:39642286-39642077 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr18:44092740-44092530 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-218 |
| Cow position: | chr18:17110034-17110247 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-216 |
| Cow position: | chr18:6213857-6213648 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-217 |
| Cow position: | chr18:24770848-24771055 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 7-224 |
| Cow position: | chr18:52916400-52916617 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 7-225 |
| Cow position: | chr18:56171718-56171936 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 8-131 |
| Cow position: | chr18:7473500-7473626 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 9-155 |
| Cow position: | chr18:13596416-13596271 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 9-215 |
| Cow position: | chr18:24554343-24554134 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 10-151 |
| Cow position: | chr18:40303731-40303590 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-212 |
| Cow position: | chr18:24728702-24728500 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 10-214 |
| Cow position: | chr18:19191119-19191323 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 10-215 |
| Cow position: | chr18:4271961-4271757 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 10-220 |
| Cow position: | chr18:26368190-26368407 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 15-119 |
| Cow position: | chr18:4717390-4717285 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 15-220 |
| Cow position: | chr18:32324709-32324913 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 15-225 |
| Cow position: | chr18:1849926-1850136 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 18-216 |
| Cow position: | chr18:37662127-37662336 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 23-216 |
| Cow position: | chr18:22076918-22077110 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.