Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-168 |
| Cow position: | chr20:28701167-28701008 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-211 |
| Cow position: | chr20:15882927-15883134 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-214 |
| Cow position: | chr20:30387065-30386847 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 32 |
| Conread position: | 1-215 |
| Cow position: | chr20:22659430-22659219 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 1-229 |
| Cow position: | chr20:9349053-9348826 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 178 |
| Conread position: | 1-229 |
| Cow position: | chr20:16820264-16820037 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 2-213 |
| Cow position: | chr20:25082343-25082554 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-214 |
| Cow position: | chr20:13308442-13308654 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-214 |
| Cow position: | chr20:25019571-25019360 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 2-215 |
| Cow position: | chr20:9125539-9125330 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr20:13412090-13411877 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr20:13518531-13518319 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr20:30313414-30313210 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr20:34171986-34172190 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr20:12351391-12351176 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 2-219 |
| Cow position: | chr20:32589661-32589877 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-225 |
| Cow position: | chr20:29404537-29404759 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 3-111 |
| Cow position: | chr20:15246327-15246435 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-121 |
| Cow position: | chr20:7644566-7644448 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-124 |
| Cow position: | chr20:35449014-35449135 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-131 |
| Cow position: | chr20:7164219-7164347 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-138 |
| Cow position: | chr20:42464449-42464585 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 3-180 |
| Cow position: | chr20:6378563-6378388 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-191 |
| Cow position: | chr20:13076563-13076368 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-203 |
| Cow position: | chr20:8052562-8052363 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-205 |
| Cow position: | chr20:21325358-21325158 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-212 |
| Cow position: | chr20:31197727-31197526 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 3-213 |
| Cow position: | chr20:18112941-18113152 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 3-213 |
| Cow position: | chr20:25575581-25575790 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 3-214 |
| Cow position: | chr20:39963394-39963604 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr20:1408564-1408773 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr20:1861263-1861474 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr20:39020362-39020574 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 3-215 |
| Cow position: | chr20:40253593-40253376 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr20:1693333-1693120 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr20:13020017-13019804 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 3-216 |
| Cow position: | chr20:24337052-24336840 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr20:40897611-40897824 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 3-217 |
| Cow position: | chr20:38702029-38701817 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-224 |
| Cow position: | chr20:16601799-16602021 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-227 |
| Cow position: | chr20:10274805-10274584 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 4-212 |
| Cow position: | chr20:23986989-23986781 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-132 |
| Cow position: | chr20:38403830-38403703 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-215 |
| Cow position: | chr20:15066181-15065973 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 5-216 |
| Cow position: | chr20:6950754-6950962 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-237 |
| Cow position: | chr20:33196349-33196579 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 6-205 |
| Cow position: | chr20:16881605-16881802 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-205 |
| Cow position: | chr20:40335014-40335213 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-213 |
| Cow position: | chr20:6528231-6528022 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-214 |
| Cow position: | chr20:12264188-12263981 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr20:6606523-6606731 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr20:17497830-17498039 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr20:34494184-34493978 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 6-217 |
| Cow position: | chr20:25720444-25720234 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-219 |
| Cow position: | chr20:24291993-24291781 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-133 |
| Cow position: | chr20:9255735-9255609 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 7-212 |
| Cow position: | chr20:11360231-11360026 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-213 |
| Cow position: | chr20:2491026-2491232 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 7-213 |
| Cow position: | chr20:6218158-6217946 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-216 |
| Cow position: | chr20:15962923-15962716 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 166, 73 |
| Conread position: | 7-216 |
| Cow position: | chr20:33244262-33244480 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 7-216 |
| Cow position: | chr20:39228828-39228618 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-217 |
| Cow position: | chr20:293581-293370 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-219 |
| Cow position: | chr20:30215092-30215304 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-236 |
| Cow position: | chr20:12784382-12784611 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 8-124 |
| Cow position: | chr20:7778552-7778431 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 9-174 |
| Cow position: | chr20:13392742-13392577 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 140 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-196 |
| Cow position: | chr20:12823441-12823627 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 9-215 |
| Cow position: | chr20:15488151-15488361 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 10-170 |
| Cow position: | chr20:26963508-26963667 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 10-198 |
| Cow position: | chr20:40381363-40381560 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 162 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 10-205 |
| Cow position: | chr20:25609933-25610128 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-216 |
| Cow position: | chr20:16339244-16339038 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 10-221 |
| Cow position: | chr20:6524917-6525139 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 10-243 |
| Cow position: | chr20:26290045-26290278 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 11-215 |
| Cow position: | chr20:4338039-4338243 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 19-220 |
| Cow position: | chr20:35357475-35357267 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 20, 14 |
Show alignments to all cow chromosomes.