Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-215 |
| Cow position: | chr21:12546651-12546865 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-215 |
| Cow position: | chr21:14206532-14206747 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 1-216 |
| Cow position: | chr21:3423419-3423633 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-216 |
| Cow position: | chr21:22980100-22980330 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 1-216 |
| Cow position: | chr21:44871070-44870855 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-213 |
| Cow position: | chr21:39671152-39670941 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-214 |
| Cow position: | chr21:27373921-27374131 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 2-215 |
| Cow position: | chr21:36890611-36890824 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr21:7020430-7020645 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 2-219 |
| Cow position: | chr21:9910238-9910022 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 2-219 |
| Cow position: | chr21:16967175-16967389 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-233 |
| Cow position: | chr21:14254669-14254909 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 2-237 |
| Cow position: | chr21:39063787-39063551 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 3-155 |
| Cow position: | chr21:14312560-14312408 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-170 |
| Cow position: | chr21:42881938-42882105 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 140 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-188 |
| Cow position: | chr21:34240100-34239916 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 3-203 |
| Cow position: | chr21:9383693-9383492 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-211 |
| Cow position: | chr21:33808676-33808883 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-212 |
| Cow position: | chr21:5241432-5241223 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-212 |
| Cow position: | chr21:13576256-13576052 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 3-213 |
| Cow position: | chr21:11744238-11744446 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 3-213 |
| Cow position: | chr21:42861725-42861517 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr21:8267469-8267681 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 3-215 |
| Cow position: | chr21:24767260-24767060 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 3-215 |
| Cow position: | chr21:36378825-36378615 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr21:14167010-14167222 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 3-220 |
| Cow position: | chr21:25148309-25148091 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 3-223 |
| Cow position: | chr21:6959799-6960019 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-229 |
| Cow position: | chr21:28696105-28695884 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-234 |
| Cow position: | chr21:21632939-21632705 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 4-214 |
| Cow position: | chr21:40240885-40240674 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 4-214 |
| Cow position: | chr21:40483461-40483672 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 4-216 |
| Cow position: | chr21:13034151-13034364 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 4-220 |
| Cow position: | chr21:9949529-9949310 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 5-130 |
| Cow position: | chr21:32942578-32942703 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-131 |
| Cow position: | chr21:6890541-6890415 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-131 |
| Cow position: | chr21:18112473-18112599 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 5-221 |
| Cow position: | chr21:29720277-29720501 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-230 |
| Cow position: | chr21:26651126-26650894 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 6-174 |
| Cow position: | chr21:16904631-16904800 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-204 |
| Cow position: | chr21:17279259-17279457 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 6-211 |
| Cow position: | chr21:10648492-10648288 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-211 |
| Cow position: | chr21:21600698-21600494 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 6-213 |
| Cow position: | chr21:464676-464879 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 6-213 |
| Cow position: | chr21:41448091-41447874 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-214 |
| Cow position: | chr21:10050581-10050380 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 6-214 |
| Cow position: | chr21:30057439-30057231 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr21:397442-397659 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 6-215 |
| Cow position: | chr21:3178931-3178726 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr21:19410019-19409810 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-217 |
| Cow position: | chr21:27222492-27222702 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 6-217 |
| Cow position: | chr21:43328829-43329042 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 6-219 |
| Cow position: | chr21:10873239-10873021 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-223 |
| Cow position: | chr21:19697482-19697699 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-230 |
| Cow position: | chr21:37168372-37168596 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 7-170 |
| Cow position: | chr21:7068456-7068294 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 7-192 |
| Cow position: | chr21:32003716-32003900 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-211 |
| Cow position: | chr21:31179490-31179703 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-213 |
| Cow position: | chr21:7529881-7529675 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr21:1159879-1159676 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chr21:9995902-9995694 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-216 |
| Cow position: | chr21:16134600-16134808 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 7-216 |
| Cow position: | chr21:48235379-48235184 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-225 |
| Cow position: | chr21:27627006-27626786 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 153, 166 |
| Conread position: | 7-244 |
| Cow position: | chr21:15977030-15976792 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 8-219 |
| Cow position: | chr21:31162970-31163182 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-219 |
| Cow position: | chr21:31216030-31215813 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 9-210 |
| Cow position: | chr21:11105512-11105712 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 9-213 |
| Cow position: | chr21:8110029-8110232 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 9-228 |
| Cow position: | chr21:24843866-24844089 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 125, 146 |
| Conread position: | 13-214 |
| Cow position: | chr21:16477127-16477329 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 16-215 |
| Cow position: | chr21:9901048-9901246 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 16-241 |
| Cow position: | chr21:21664066-21663841 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 81 |
| Conread position: | 17-215 |
| Cow position: | chr21:28156216-28156414 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 20-174 |
| Cow position: | chr21:2104234-2104080 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-260 |
| Cow position: | chr21:25306018-25306254 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 78-262 |
| Cow position: | chr21:18687739-18687555 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 119, 100 |
Show alignments to all cow chromosomes.