Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-123 |
| Cow position: | chr24:38254561-38254440 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-181 |
| Cow position: | chr24:9675968-9675788 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-202 |
| Cow position: | chr24:42290555-42290354 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 1-212 |
| Cow position: | chr24:42936587-42936377 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-213 |
| Cow position: | chr24:7183130-7183341 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-214 |
| Cow position: | chr24:12013147-12012938 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 1-217 |
| Cow position: | chr24:3222186-3222393 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-132 |
| Cow position: | chr24:8154869-8154999 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-137 |
| Cow position: | chr24:32871520-32871655 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 2-170 |
| Cow position: | chr24:1941659-1941495 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 2-174 |
| Cow position: | chr24:16955603-16955429 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-211 |
| Cow position: | chr24:630995-630786 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr24:4814554-4814765 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 2-215 |
| Cow position: | chr24:13164712-13164502 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr24:25722391-25722177 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-216 |
| Cow position: | chr24:9328633-9328417 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 2-216 |
| Cow position: | chr24:33105891-33105681 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 3-124 |
| Cow position: | chr24:28347418-28347538 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-131 |
| Cow position: | chr24:23218854-23218731 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 3-171 |
| Cow position: | chr24:12754421-12754253 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-212 |
| Cow position: | chr24:10608789-10608574 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 120, 175 |
| Conread position: | 3-214 |
| Cow position: | chr24:14076461-14076250 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 3-214 |
| Cow position: | chr24:21701169-21700959 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 3-214 |
| Cow position: | chr24:36863218-36863003 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 133, 30 |
| Conread position: | 3-215 |
| Cow position: | chr24:4990196-4990408 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-215 |
| Cow position: | chr24:18587073-18587285 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chr24:18784502-18784715 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 3-216 |
| Cow position: | chr24:2638305-2638518 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-217 |
| Cow position: | chr24:18457911-18457699 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-217 |
| Cow position: | chr24:38156610-38156822 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 3-218 |
| Cow position: | chr24:10210383-10210599 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-221 |
| Cow position: | chr24:28958360-28958141 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 3-227 |
| Cow position: | chr24:4728247-4728471 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-227 |
| Cow position: | chr24:32960899-32960677 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-239 |
| Cow position: | chr24:2619164-2619399 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 4-170 |
| Cow position: | chr24:26194693-26194526 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 4-216 |
| Cow position: | chr24:15030766-15030554 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 4-226 |
| Cow position: | chr24:17643858-17644084 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 5-136 |
| Cow position: | chr24:5846866-5846737 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-176 |
| Cow position: | chr24:27326120-27325948 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-217 |
| Cow position: | chr24:32907615-32907828 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 5-222 |
| Cow position: | chr24:26729123-26729339 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 6-124 |
| Cow position: | chr24:23000972-23001090 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-124 |
| Cow position: | chr24:27564464-27564582 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 6-131 |
| Cow position: | chr24:1100851-1100728 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-152 |
| Cow position: | chr24:43422757-43422903 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 6-169 |
| Cow position: | chr24:42411059-42411224 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-204 |
| Cow position: | chr24:32336105-32336303 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-212 |
| Cow position: | chr24:33341160-33340955 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-213 |
| Cow position: | chr24:10502179-10502385 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr24:27566370-27566163 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr24:43932889-43933099 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-217 |
| Cow position: | chr24:18419110-18418901 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-219 |
| Cow position: | chr24:38706358-38706145 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 6-222 |
| Cow position: | chr24:19634988-19634773 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 6-222 |
| Cow position: | chr24:42148174-42147966 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-223 |
| Cow position: | chr24:10023859-10023644 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 7-131 |
| Cow position: | chr24:8600756-8600881 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-205 |
| Cow position: | chr24:28740437-28740635 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-212 |
| Cow position: | chr24:41452240-41452443 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-213 |
| Cow position: | chr24:18321644-18321851 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 7-214 |
| Cow position: | chr24:3320142-3320349 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-216 |
| Cow position: | chr24:40018983-40018774 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-242 |
| Cow position: | chr24:38024361-38024595 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-249 |
| Cow position: | chr24:25774137-25774380 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 8-134 |
| Cow position: | chr24:7041783-7041908 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 9-168 |
| Cow position: | chr24:18137594-18137436 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-215 |
| Cow position: | chr24:14435042-14434839 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-216 |
| Cow position: | chr24:18142077-18142296 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 9-220 |
| Cow position: | chr24:6339257-6339049 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 10-215 |
| Cow position: | chr24:18353071-18352857 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 14-215 |
| Cow position: | chr24:7793652-7793853 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 15-216 |
| Cow position: | chr24:37236015-37235815 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 15-216 |
| Cow position: | chr24:44800259-44800051 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 157, 198 |
| Conread position: | 20-130 |
| Cow position: | chr24:31832222-31832112 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 20-220 |
| Cow position: | chr24:2927404-2927612 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 23-215 |
| Cow position: | chr24:44141925-44141723 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 29-215 |
| Cow position: | chr24:44189705-44189520 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 148, 0 |
Show alignments to all cow chromosomes.