Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-131 |
| Cow position: | chr29:852135-852269 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-212 |
| Cow position: | chr29:15554575-15554788 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 1-212 |
| Cow position: | chr29:24535499-24535288 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-214 |
| Cow position: | chr29:20189693-20189906 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-216 |
| Cow position: | chr29:24124376-24124592 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 1-217 |
| Cow position: | chr29:29400581-29400797 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-221 |
| Cow position: | chr29:275410-275184 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 2-213 |
| Cow position: | chr29:14187847-14187637 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 2-214 |
| Cow position: | chr29:8591401-8591191 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-214 |
| Cow position: | chr29:40161923-40162133 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-215 |
| Cow position: | chr29:18087892-18087670 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-217 |
| Cow position: | chr29:37272399-37272612 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 3-121 |
| Cow position: | chr29:25820908-25820790 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 3-160 |
| Cow position: | chr29:4096159-4096002 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-161 |
| Cow position: | chr29:38533684-38533523 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 3-196 |
| Cow position: | chr29:11431329-11431522 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-205 |
| Cow position: | chr29:19068677-19068475 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-212 |
| Cow position: | chr29:4597442-4597234 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-212 |
| Cow position: | chr29:16321902-16321693 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-212 |
| Cow position: | chr29:36079616-36079824 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-213 |
| Cow position: | chr29:1471284-1471074 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-214 |
| Cow position: | chr29:37212301-37212512 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 13, 188 |
| Conread position: | 3-215 |
| Cow position: | chr29:21678878-21679088 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 3-215 |
| Cow position: | chr29:38045879-38045668 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 3-216 |
| Cow position: | chr29:21949704-21949919 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chr29:31262959-31262746 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-217 |
| Cow position: | chr29:32942768-32942554 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-217 |
| Cow position: | chr29:42760114-42760328 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 3-219 |
| Cow position: | chr29:8898762-8898545 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-219 |
| Cow position: | chr29:14228713-14228929 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-221 |
| Cow position: | chr29:30569265-30569481 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-223 |
| Cow position: | chr29:21998027-21998243 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 5-120 |
| Cow position: | chr29:8244174-8244289 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-174 |
| Cow position: | chr29:28240396-28240223 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-197 |
| Cow position: | chr29:9845796-9845988 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 5-215 |
| Cow position: | chr29:15801966-15802170 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 6-132 |
| Cow position: | chr29:19439862-19439736 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-170 |
| Cow position: | chr29:33129665-33129829 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 6-193 |
| Cow position: | chr29:384085-383899 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 6-196 |
| Cow position: | chr29:24992365-24992557 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-211 |
| Cow position: | chr29:35736635-35736430 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-211 |
| Cow position: | chr29:35737617-35737412 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-213 |
| Cow position: | chr29:14350243-14350037 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 160 |
| Conread position: | 6-213 |
| Cow position: | chr29:30939352-30939557 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr29:7553285-7553491 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chr29:22924479-22924688 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-216 |
| Cow position: | chr29:14588417-14588627 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-217 |
| Cow position: | chr29:13677491-13677711 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-228 |
| Cow position: | chr29:40459386-40459167 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-229 |
| Cow position: | chr29:42749164-42748942 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 92 |
| Conread position: | 6-229 |
| Cow position: | chr29:42985823-42986048 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-213 |
| Cow position: | chr29:4226844-4227049 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 7-215 |
| Cow position: | chr29:30435971-30435764 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-216 |
| Cow position: | chr29:4352266-4352060 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-220 |
| Cow position: | chr29:24946500-24946288 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 8-133 |
| Cow position: | chr29:22332894-22332769 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-176 |
| Cow position: | chr29:3401409-3401577 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-210 |
| Cow position: | chr29:6894468-6894669 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 187, 163 |
| Conread position: | 9-171 |
| Cow position: | chr29:24032076-24031909 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 9-204 |
| Cow position: | chr29:29224127-29224323 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-210 |
| Cow position: | chr29:42846893-42847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-215 |
| Cow position: | chr29:39049488-39049292 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 10-119 |
| Cow position: | chr29:19572644-19572753 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 10-213 |
| Cow position: | chr29:27701794-27702006 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 10-215 |
| Cow position: | chr29:13516888-13517094 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 10-215 |
| Cow position: | chr29:31892466-31892272 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 15-193 |
| Cow position: | chr29:19099685-19099508 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 20-214 |
| Cow position: | chr29:8128092-8128286 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 182, 157 |
| Conread position: | 23-215 |
| Cow position: | chr29:37218323-37218121 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 16, 11 |
Show alignments to all cow chromosomes.