Cow genome map

Conread name: unkn-SGD602702291.R1

Conread position: 1-126
Cow position: chr4:4713660-4713780 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 1-205
Cow position: chr4:57671418-57671622 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 1-205
Cow position: chr4:64516852-64517048 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 163
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 32

Conread position: 1-213
Cow position: chr4:16040735-16040525 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 14, 0

Conread position: 1-219
Cow position: chr4:5752143-5751925 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 1-222
Cow position: chr4:61266233-61266455 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 2-175
Cow position: chr4:52497280-52497454 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 9, 32

Conread position: 2-207
Cow position: chr4:52131760-52131964 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 195, 0

Conread position: 2-211
Cow position: chr4:28693331-28693130 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 37, 26

Conread position: 2-213
Cow position: chr4:60438345-60438557 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 31

Conread position: 2-214
Cow position: chr4:68045830-68045609 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 31

Conread position: 2-216
Cow position: chr4:54939003-54939217 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 31

Conread position: 2-230
Cow position: chr4:2720250-2720479 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 37, 31

Conread position: 3-121
Cow position: chr4:59969678-59969795 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 103
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 36, 30

Conread position: 3-132
Cow position: chr4:51904031-51903902 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 30

Conread position: 3-134
Cow position: chr4:25185514-25185645 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 34, 30

Conread position: 3-149
Cow position: chr4:33873040-33872894 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 127
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 30

Conread position: 3-169
Cow position: chr4:1445431-1445594 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 36, 30

Conread position: 3-171
Cow position: chr4:19574782-19574950 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 3-194
Cow position: chr4:59716413-59716602 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 36, 9

Conread position: 3-198
Cow position: chr4:54975835-54975640 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr4:12804368-12804570 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 30

Conread position: 3-212
Cow position: chr4:57559267-57559476 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-213
Cow position: chr4:44093639-44093849 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-214
Cow position: chr4:11176370-11176160 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-214
Cow position: chr4:45530585-45530373 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 31

Conread position: 3-214
Cow position: chr4:66449915-66449705 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr4:2947745-2947535 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr4:25054198-25053988 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr4:52813770-52813982 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr4:53729546-53729335 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr4:65793233-65793022 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 35, 30

Conread position: 3-216
Cow position: chr4:11579242-11579031 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr4:17824465-17824681 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr4:63408539-63408327 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-217
Cow position: chr4:30646478-30646265 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-218
Cow position: chr4:6501398-6501183 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 36, 30

Conread position: 3-218
Cow position: chr4:67448461-67448675 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 24

Conread position: 3-220
Cow position: chr4:63406538-63406754 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-221
Cow position: chr4:65948445-65948663 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 3-224
Cow position: chr4:34115487-34115266 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 30

Conread position: 3-224
Cow position: chr4:53115644-53115870 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 12

Conread position: 3-230
Cow position: chr4:35285311-35285536 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-242
Cow position: chr4:55870742-55870983 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 4-169
Cow position: chr4:42709689-42709858 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 35, 29

Conread position: 4-212
Cow position: chr4:27767822-27768030 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 29

Conread position: 4-215
Cow position: chr4:29683232-29683449 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 171, 111

Conread position: 4-219
Cow position: chr4:60498375-60498579 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 35, 29

Conread position: 4-225
Cow position: chr4:9618260-9618480 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 35, 28

Conread position: 5-162
Cow position: chr4:25137014-25137171 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 42, 28

Conread position: 5-177
Cow position: chr4:18669428-18669256 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 5-217
Cow position: chr4:41291808-41291596 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 6-151
Cow position: chr4:46093870-46094015 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 27

Conread position: 6-166
Cow position: chr4:35628208-35628368 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 137
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 33, 27

Conread position: 6-212
Cow position: chr4:14418402-14418200 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 125, 49

Conread position: 6-215
Cow position: chr4:1990745-1990952 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 6-215
Cow position: chr4:5740867-5741076 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr4:17357877-17357672 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 67, 0

Conread position: 6-215
Cow position: chr4:28126840-28126632 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 25

Conread position: 6-215
Cow position: chr4:38178832-38178623 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 25

Conread position: 6-215
Cow position: chr4:52842197-52842407 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-216
Cow position: chr4:32559961-32559752 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-216
Cow position: chr4:40259321-40259531 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 6-216
Cow position: chr4:59520954-59521164 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-217
Cow position: chr4:28171232-28171029 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 33, 27

Conread position: 6-217
Cow position: chr4:54879539-54879750 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-218
Cow position: chr4:51557442-51557653 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 114, 0

Conread position: 6-219
Cow position: chr4:68032917-68033130 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-235
Cow position: chr4:46995535-46995308 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 7-131
Cow position: chr4:12134565-12134689 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 21

Conread position: 7-131
Cow position: chr4:16775373-16775252 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 27

Conread position: 7-137
Cow position: chr4:4459339-4459209 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 32, 26

Conread position: 7-137
Cow position: chr4:22492904-22492774 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 31, 26

Conread position: 7-183
Cow position: chr4:3878271-3878096 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 28

Conread position: 7-207
Cow position: chr4:1264005-1263805 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 32, 26

Conread position: 7-212
Cow position: chr4:31936174-31936378 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-213
Cow position: chr4:58157407-58157619 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr4:18767518-18767312 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr4:19544520-19544728 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr4:22395675-22395469 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr4:59188988-59189196 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-216
Cow position: chr4:24657090-24657292 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 24

Conread position: 7-217
Cow position: chr4:49707545-49707756 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 32, 26

Conread position: 7-218
Cow position: chr4:30681253-30681043 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 170, 0

Conread position: 7-219
Cow position: chr4:23582280-23582069 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 26

Conread position: 7-224
Cow position: chr4:34226310-34226101 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 211, 161

Conread position: 8-136
Cow position: chr4:34406617-34406743 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 8-204
Cow position: chr4:20045837-20046033 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 31, 25

Conread position: 8-211
Cow position: chr4:51610390-51610188 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 25

Conread position: 9-214
Cow position: chr4:52328678-52328892 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 30, 24

Conread position: 9-215
Cow position: chr4:34374236-34374442 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 10-131
Cow position: chr4:9534370-9534491 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 23

Conread position: 10-132
Cow position: chr4:65977856-65977976 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 5

Conread position: 10-148
Cow position: chr4:35973492-35973630 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 23

Conread position: 10-215
Cow position: chr4:57217380-57217586 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 22

Conread position: 10-240
Cow position: chr4:4913796-4914025 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 24

Conread position: 15-130
Cow position: chr4:11936971-11937086 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 18

Conread position: 20-209
Cow position: chr4:65037803-65038000 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 64, 131

Conread position: 20-216
Cow position: chr4:68961634-68961436 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 13

Conread position: 29-130
Cow position: chr4:25781925-25781824 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-167
Cow position: chr4:28720341-28720202 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 78-220
Cow position: chr4:66871875-66872017 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 119, 100

Show alignments to all cow chromosomes.