Cow genome map

Conread name: unkn-SGD602702291.R1

Conread position: 1-151
Cow position: chr5:47896549-47896399 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 32

Conread position: 1-197
Cow position: chr5:54685082-54685274 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 32

Conread position: 1-215
Cow position: chr5:25584515-25584720 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 171
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 38, 32

Conread position: 1-215
Cow position: chr5:61858475-61858261 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 38, 31

Conread position: 2-170
Cow position: chr5:8803316-8803148 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 31

Conread position: 2-194
Cow position: chr5:32376122-32375940 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 37, 31

Conread position: 2-214
Cow position: chr5:10106633-10106437 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 31

Conread position: 2-215
Cow position: chr5:46640768-46640555 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 2-217
Cow position: chr5:1130204-1129995 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 170
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 37, 31

Conread position: 3-137
Cow position: chr5:75220985-75220850 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 30

Conread position: 3-178
Cow position: chr5:10745123-10745298 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr5:3032332-3032133 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-211
Cow position: chr5:70940229-70940440 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-213
Cow position: chr5:4239844-4239634 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 36, 30

Conread position: 3-213
Cow position: chr5:26894911-26894704 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 164
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 159, 0

Conread position: 3-214
Cow position: chr5:27893304-27893515 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-214
Cow position: chr5:43413437-43413648 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr5:4419533-4419744 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 92

Conread position: 3-215
Cow position: chr5:18533784-18533572 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 13, 31

Conread position: 3-215
Cow position: chr5:30872221-30872440 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 36, 14

Conread position: 3-215
Cow position: chr5:55317714-55317926 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr5:74524670-74524881 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:3075226-3075433 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:23252505-23252292 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:27045977-27045767 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 36, 29

Conread position: 3-216
Cow position: chr5:37740243-37740030 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:54535059-54535272 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:55335209-55335421 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:57310675-57310888 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:60131814-60131602 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr5:70840754-70840967 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 30

Conread position: 3-217
Cow position: chr5:48780782-48780996 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 12

Conread position: 3-221
Cow position: chr5:38255313-38255095 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 3-222
Cow position: chr5:23270883-23271101 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-222
Cow position: chr5:34291125-34290906 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 30

Conread position: 3-222
Cow position: chr5:40896932-40896714 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 36, 30

Conread position: 4-171
Cow position: chr5:3580707-3580874 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 36, 29

Conread position: 4-229
Cow position: chr5:44513478-44513700 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 35, 29

Conread position: 5-162
Cow position: chr5:9085255-9085099 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 134
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 34, 28

Conread position: 5-214
Cow position: chr5:12593741-12593944 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 28

Conread position: 5-215
Cow position: chr5:17897996-17897786 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 5-215
Cow position: chr5:43999537-43999747 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 5-217
Cow position: chr5:43993530-43993742 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 5-227
Cow position: chr5:13760165-13759945 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 6-181
Cow position: chr5:32283272-32283097 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 33, 27

Conread position: 6-211
Cow position: chr5:9429588-9429383 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 27

Conread position: 6-212
Cow position: chr5:8805380-8805583 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 28

Conread position: 6-213
Cow position: chr5:33924488-33924696 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-214
Cow position: chr5:24655359-24655566 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-214
Cow position: chr5:52198541-52198749 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-214
Cow position: chr5:59958861-59959068 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-216
Cow position: chr5:44667776-44667566 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 142

Conread position: 6-216
Cow position: chr5:51093439-51093649 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 167

Conread position: 6-216
Cow position: chr5:63047862-63048074 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 8, 28

Conread position: 6-217
Cow position: chr5:18001907-18001695 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-217
Cow position: chr5:28654068-28653858 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 41, 27

Conread position: 6-217
Cow position: chr5:45423987-45424194 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 100, 0

Conread position: 6-218
Cow position: chr5:12692735-12692941 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 33, 27

Conread position: 6-219
Cow position: chr5:18018274-18018486 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 33, 27

Conread position: 6-239
Cow position: chr5:14296810-14296583 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 27

Conread position: 7-171
Cow position: chr5:59639871-59640035 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 26

Conread position: 7-174
Cow position: chr5:67905765-67905599 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 32, 26

Conread position: 7-203
Cow position: chr5:67528206-67528402 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-205
Cow position: chr5:22390177-22389979 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-214
Cow position: chr5:57047026-57047235 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr5:20045957-20046160 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr5:54397023-54396815 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 26

Conread position: 7-216
Cow position: chr5:18485123-18485335 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-216
Cow position: chr5:25447854-25447646 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 40, 26

Conread position: 7-216
Cow position: chr5:67652511-67652303 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-229
Cow position: chr5:6033213-6033432 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 31, 26

Conread position: 8-137
Cow position: chr5:56883413-56883542 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 25

Conread position: 8-214
Cow position: chr5:27080953-27081163 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 23

Conread position: 8-214
Cow position: chr5:59399380-59399182 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 31, 25

Conread position: 8-215
Cow position: chr5:72456882-72457089 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 30, 25

Conread position: 8-216
Cow position: chr5:49603931-49604148 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 31, 25

Conread position: 9-211
Cow position: chr5:14581152-14580947 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 24

Conread position: 9-215
Cow position: chr5:9448262-9448058 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 25, 17

Conread position: 9-215
Cow position: chr5:33169203-33169408 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 166
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 6

Conread position: 9-216
Cow position: chr5:76338500-76338712 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 24

Conread position: 9-219
Cow position: chr5:35639177-35639388 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 30, 24

Conread position: 9-270
Cow position: chr5:71151512-71151250 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 24

Conread position: 10-131
Cow position: chr5:43134520-43134399 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 10-149
Cow position: chr5:69382129-69381991 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 117
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 91, 0

Conread position: 11-216
Cow position: chr5:30367913-30368118 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 22

Conread position: 11-216
Cow position: chr5:37890739-37890536 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 165
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 22

Conread position: 15-227
Cow position: chr5:41588111-41587900 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 182, 19

Conread position: 20-215
Cow position: chr5:7072281-7072484 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 13, 18

Conread position: 23-215
Cow position: chr5:7412313-7412509 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 117, 158

Show alignments to all cow chromosomes.