Cow genome map

Conread name: unkn-SGD602702291.R1

Conread position: 1-131
Cow position: chr8:29932506-29932636 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 114
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 32

Conread position: 1-137
Cow position: chr8:4533032-4532897 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 122
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 32, 0

Conread position: 1-213
Cow position: chr8:53875348-53875136 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 32

Conread position: 1-214
Cow position: chr8:2516135-2515913 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 174, 0

Conread position: 1-215
Cow position: chr8:33289498-33289711 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 1-215
Cow position: chr8:52015154-52015368 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 1-215
Cow position: chr8:60607779-60607992 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 38, 32

Conread position: 1-232
Cow position: chr8:1505349-1505129 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 32

Conread position: 2-115
Cow position: chr8:36191665-36191775 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 37, 31

Conread position: 2-117
Cow position: chr8:19008422-19008307 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 31

Conread position: 2-215
Cow position: chr8:7883332-7883126 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 158, 59

Conread position: 2-215
Cow position: chr8:10160027-10160239 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 31

Conread position: 2-219
Cow position: chr8:37609373-37609148 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 31

Conread position: 2-234
Cow position: chr8:8892503-8892270 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 3-105
Cow position: chr8:53643430-53643533 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 31

Conread position: 3-120
Cow position: chr8:30821167-30821282 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 30

Conread position: 3-131
Cow position: chr8:25115612-25115740 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 111
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 36, 30

Conread position: 3-131
Cow position: chr8:35808095-35807967 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 36, 28

Conread position: 3-139
Cow position: chr8:31673359-31673493 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 36, 30

Conread position: 3-174
Cow position: chr8:30550217-30550046 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 145
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 30

Conread position: 3-200
Cow position: chr8:34229227-34229030 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr8:8050461-8050656 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr8:16215864-16216062 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 30

Conread position: 3-205
Cow position: chr8:51320144-51320334 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 29

Conread position: 3-210
Cow position: chr8:10494029-10493822 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 36, 28

Conread position: 3-211
Cow position: chr8:56593844-56593637 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-212
Cow position: chr8:33599510-33599298 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 177

Conread position: 3-213
Cow position: chr8:21080067-21079857 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 137, 149

Conread position: 3-215
Cow position: chr8:5913361-5913149 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr8:22752458-22752251 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 30

Conread position: 3-215
Cow position: chr8:31991787-31992000 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr8:35426407-35426196 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 30

Conread position: 3-215
Cow position: chr8:45771092-45771304 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 32

Conread position: 3-215
Cow position: chr8:48966669-48966880 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 3-215
Cow position: chr8:56762255-56762468 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 30

Conread position: 3-216
Cow position: chr8:42348605-42348818 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 30

Conread position: 3-217
Cow position: chr8:16470294-16470073 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 35, 30

Conread position: 3-217
Cow position: chr8:38388773-38388987 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 3-217
Cow position: chr8:45197055-45197268 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-220
Cow position: chr8:10270098-10269882 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 36, 32

Conread position: 3-222
Cow position: chr8:36203141-36203361 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 30

Conread position: 3-236
Cow position: chr8:37877909-37877677 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 3-242
Cow position: chr8:3965942-3965708 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 4-215
Cow position: chr8:47947097-47947308 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 4-222
Cow position: chr8:1560862-1560641 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 35, 29

Conread position: 5-131
Cow position: chr8:12165789-12165915 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 28

Conread position: 5-215
Cow position: chr8:60978571-60978350 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 34, 11

Conread position: 5-216
Cow position: chr8:17011226-17011435 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 142, 0

Conread position: 5-216
Cow position: chr8:38470017-38470240 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 28

Conread position: 5-217
Cow position: chr8:27690864-27690652 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-234
Cow position: chr8:48539498-48539726 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 28

Conread position: 6-120
Cow position: chr8:2803583-2803697 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 26

Conread position: 6-197
Cow position: chr8:37097901-37097703 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 155, 0

Conread position: 6-203
Cow position: chr8:24878349-24878534 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 33, 27

Conread position: 6-213
Cow position: chr8:23443558-23443352 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr8:18712443-18712651 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr8:24768611-24768819 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr8:30544785-30544580 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr8:37382575-37382784 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-215
Cow position: chr8:53134834-53135039 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 6-216
Cow position: chr8:4527331-4527541 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-216
Cow position: chr8:30726405-30726613 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 6-218
Cow position: chr8:54144020-54143810 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 27

Conread position: 6-221
Cow position: chr8:9255157-9255363 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 27

Conread position: 6-223
Cow position: chr8:29211957-29212175 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 29

Conread position: 6-244
Cow position: chr8:44676447-44676199 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 7-133
Cow position: chr8:32579247-32579117 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 26

Conread position: 7-204
Cow position: chr8:56284033-56284229 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-206
Cow position: chr8:10611075-10611269 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 32, 26

Conread position: 7-211
Cow position: chr8:29389696-29389492 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 67

Conread position: 7-212
Cow position: chr8:38252471-38252267 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 164
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 26

Conread position: 7-213
Cow position: chr8:53739054-53739259 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 25

Conread position: 7-215
Cow position: chr8:12549273-12549066 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 164
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 32, 26

Conread position: 7-215
Cow position: chr8:34283757-34283964 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 7-218
Cow position: chr8:11036492-11036705 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 7-219
Cow position: chr8:1035607-1035399 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 32, 26

Conread position: 7-233
Cow position: chr8:48808652-48808876 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 8-137
Cow position: chr8:38814770-38814642 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 25

Conread position: 8-197
Cow position: chr8:15768424-15768612 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 31, 25

Conread position: 8-215
Cow position: chr8:10859392-10859186 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 25

Conread position: 8-215
Cow position: chr8:37905643-37905436 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 31, 25

Conread position: 8-218
Cow position: chr8:37866082-37865875 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 31, 25

Conread position: 8-218
Cow position: chr8:45983994-45984204 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 25

Conread position: 8-221
Cow position: chr8:7658105-7657893 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 186, 177

Conread position: 9-149
Cow position: chr8:39074724-39074864 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 24

Conread position: 9-252
Cow position: chr8:41061162-41060920 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 10-134
Cow position: chr8:1634725-1634849 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 12, 24

Conread position: 10-198
Cow position: chr8:8132732-8132929 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 159
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 37, 23

Conread position: 10-210
Cow position: chr8:25118302-25118094 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 29, 22

Conread position: 10-215
Cow position: chr8:21972472-21972677 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 10-215
Cow position: chr8:33118990-33119192 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 29, 23

Conread position: 10-215
Cow position: chr8:44103901-44103696 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 10-215
Cow position: chr8:56504160-56504374 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 154, 184

Conread position: 10-231
Cow position: chr8:17464777-17464552 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 152, 25

Conread position: 16-215
Cow position: chr8:57192238-57192030 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 23, 17

Conread position: 20-142
Cow position: chr8:23865070-23864950 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 13

Conread position: 20-170
Cow position: chr8:4034748-4034898 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 13

Conread position: 20-216
Cow position: chr8:6327499-6327697 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 153

Conread position: 20-276
Cow position: chr8:59143163-59142907 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 14

Conread position: 23-125
Cow position: chr8:10609211-10609312 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.