Cow genome map
| Conread name: | unkn-SGD602702291.R1 |
| Conread position: | 1-205 |
| Cow position: | chrX:11450684-11450480 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-160 |
| Cow position: | chrX:28272764-28272922 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 2-205 |
| Cow position: | chrX:42754702-42754905 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-222 |
| Cow position: | chrX:17880239-17880017 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 2-222 |
| Cow position: | chrX:28122904-28123118 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-188 |
| Cow position: | chrX:36171475-36171290 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-188 |
| Cow position: | chrX:46957040-46957225 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-203 |
| Cow position: | chrX:11589303-11589499 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-213 |
| Cow position: | chrX:1633453-1633664 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chrX:24882706-24882918 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chrX:34139937-34139725 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-215 |
| Cow position: | chrX:41552580-41552789 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 3-216 |
| Cow position: | chrX:2110155-2109943 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chrX:11812764-11812551 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chrX:23914939-23914717 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chrX:46202728-46202942 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-216 |
| Cow position: | chrX:47333802-47334018 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-217 |
| Cow position: | chrX:29857823-29857609 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 3-225 |
| Cow position: | chrX:31144485-31144253 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 4-193 |
| Cow position: | chrX:24946446-24946258 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 4-215 |
| Cow position: | chrX:41088261-41088472 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 5-213 |
| Cow position: | chrX:32139142-32139350 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 5-216 |
| Cow position: | chrX:21696645-21696435 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 6-141 |
| Cow position: | chrX:15292257-15292392 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 6-145 |
| Cow position: | chrX:2790173-2790310 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 6-163 |
| Cow position: | chrX:46823391-46823235 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 6-184 |
| Cow position: | chrX:43189264-43189090 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-194 |
| Cow position: | chrX:15736869-15737057 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-196 |
| Cow position: | chrX:31407707-31407896 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 6-198 |
| Cow position: | chrX:35799545-35799737 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-205 |
| Cow position: | chrX:29272866-29272668 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chrX:37068766-37068557 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-215 |
| Cow position: | chrX:40366272-40366063 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 6-216 |
| Cow position: | chrX:18036691-18036884 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 6-217 |
| Cow position: | chrX:10284889-10285097 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 6-217 |
| Cow position: | chrX:48001000-48001210 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 7-132 |
| Cow position: | chrX:20995036-20995158 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 6, 28 |
| Conread position: | 7-132 |
| Cow position: | chrX:22417650-22417525 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-213 |
| Cow position: | chrX:25320199-25320406 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-214 |
| Cow position: | chrX:19906876-19907083 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 7-215 |
| Cow position: | chrX:17279832-17280040 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-215 |
| Cow position: | chrX:38164681-38164889 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 7-217 |
| Cow position: | chrX:48078465-48078677 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 8-214 |
| Cow position: | chrX:40300804-40301008 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 8-216 |
| Cow position: | chrX:19419291-19419082 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 8-217 |
| Cow position: | chrX:15357740-15357532 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 9-132 |
| Cow position: | chrX:27185424-27185301 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-215 |
| Cow position: | chrX:42940975-42941179 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-218 |
| Cow position: | chrX:44435242-44435025 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-219 |
| Cow position: | chrX:21496288-21496498 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 9-219 |
| Cow position: | chrX:21560263-21560057 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 10-197 |
| Cow position: | chrX:35848685-35848863 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 10-215 |
| Cow position: | chrX:34559947-34559743 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 10-218 |
| Cow position: | chrX:6548281-6548489 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 10-229 |
| Cow position: | chrX:10813472-10813689 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 13-216 |
| Cow position: | chrX:46897425-46897213 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 15-230 |
| Cow position: | chrX:32336541-32336329 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 17-134 |
| Cow position: | chrX:44090167-44090284 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 20-206 |
| Cow position: | chrX:44856702-44856516 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-211 |
| Cow position: | chrX:45422068-45422271 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 20-214 |
| Cow position: | chrX:42814905-42814711 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 35-227 |
| Cow position: | chrX:42203996-42204188 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 143 |
| Conread position: | 58-244 |
| Cow position: | chrX:23654702-23654897 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.