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Cow genome map

           
Conread name:
           
unkn-SofBand_140
        

               
Conread position:
               
120-559
               

               
Cow position:
               
chr4:30974069-30974517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
156-579
               

               
Cow position:
               
chr4:53208059-53208483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
168-316
               

               
Cow position:
               
chr4:43750031-43749884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
144, 11
               

               
Conread position:
               
168-341
               

               
Cow position:
               
chr4:56514158-56513982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
168-431
               

               
Cow position:
               
chr4:19142069-19142328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
168-440
               

               
Cow position:
               
chr4:39231742-39231460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
168-447
               

               
Cow position:
               
chr4:21257348-21257057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
168-456
               

               
Cow position:
               
chr4:66112296-66111994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
168-495
               

               
Cow position:
               
chr4:27529894-27530232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 7
               

               
Conread position:
               
168-497
               

               
Cow position:
               
chr4:11872131-11871802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
168-538
               

               
Cow position:
               
chr4:17833125-17832736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
168-559
               

               
Cow position:
               
chr4:21064819-21065208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
168-563
               

               
Cow position:
               
chr4:33971115-33970717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
138, 7
               

               
Conread position:
               
168-574
               

               
Cow position:
               
chr4:3837060-3837464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
168-581
               

               
Cow position:
               
chr4:3283668-3283248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
169-441
               

               
Cow position:
               
chr4:5461078-5460799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
170-383
               

               
Cow position:
               
chr4:22215873-22215649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
171-558
               

               
Cow position:
               
chr4:45077292-45076897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
173-583
               

               
Cow position:
               
chr4:41867228-41867656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
174-457
               

               
Cow position:
               
chr4:11331874-11332175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
176-501
               

               
Cow position:
               
chr4:12903605-12903944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
181-495
               

               
Cow position:
               
chr4:34337477-34337157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
181-581
               

               
Cow position:
               
chr4:31859054-31859474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
186-442
               

               
Cow position:
               
chr4:19256109-19256347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
186-501
               

               
Cow position:
               
chr4:58881169-58880842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
186-538
               

               
Cow position:
               
chr4:17201063-17201418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
135, 119
               

               
Conread position:
               
186-584
               

               
Cow position:
               
chr4:21392017-21391615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
190-496
               

               
Cow position:
               
chr4:65175342-65175030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 165
               

               
Conread position:
               
196-438
               

               
Cow position:
               
chr4:57306284-57306513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 96
               

               
Conread position:
               
199-305
               

               
Cow position:
               
chr4:62471878-62471984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
199-314
               

               
Cow position:
               
chr4:56409991-56410109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
199-317
               

               
Cow position:
               
chr4:620344-620225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
199-317
               

               
Cow position:
               
chr4:27292150-27292031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
199-379
               

               
Cow position:
               
chr4:41907982-41907801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
199-385
               

               
Cow position:
               
chr4:33357740-33357942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
199-390
               

               
Cow position:
               
chr4:33062720-33062904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 94
               

               
Conread position:
               
199-435
               

               
Cow position:
               
chr4:20299080-20299330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
199-440
               

               
Cow position:
               
chr4:27540431-27540680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
199-441
               

               
Cow position:
               
chr4:47351615-47351865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
199-442
               

               
Cow position:
               
chr4:46488027-46487781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 214
               

               
Conread position:
               
199-447
               

               
Cow position:
               
chr4:65179322-65179081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
106, 134
               

               
Conread position:
               
199-476
               

               
Cow position:
               
chr4:3251726-3251448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
141, 108
               

               
Conread position:
               
199-479
               

               
Cow position:
               
chr4:54111553-54111841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 168
               

               
Conread position:
               
199-480
               

               
Cow position:
               
chr4:38952368-38952654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
199-486
               

               
Cow position:
               
chr4:63459406-63459116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
112, 148
               

               
Conread position:
               
199-497
               

               
Cow position:
               
chr4:11496821-11496535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
159, 47
               

               
Conread position:
               
199-500
               

               
Cow position:
               
chr4:23655805-23656088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
199-500
               

               
Cow position:
               
chr4:45644502-45644200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
112, 219
               

               
Conread position:
               
199-501
               

               
Cow position:
               
chr4:7847458-7847158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
199-501
               

               
Cow position:
               
chr4:63096266-63095954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
199-502
               

               
Cow position:
               
chr4:7808392-7808696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
99, 93
               

               
Conread position:
               
199-520
               

               
Cow position:
               
chr4:23599980-23600312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr4:19097101-19097463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
199-551
               

               
Cow position:
               
chr4:68387601-68387964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
199-554
               

               
Cow position:
               
chr4:22010249-22009884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
199-555
               

               
Cow position:
               
chr4:46550194-46550568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 353
               

               
Conread position:
               
199-558
               

               
Cow position:
               
chr4:19708751-19709125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:13344351-13344719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:13693868-13693491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 279
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:19597506-19597149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:20327906-20327540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:26659114-26659483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:31136566-31136938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 24
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:38935168-38935541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:38944455-38944075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 211
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr4:48485810-48486179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 122
               

               
Conread position:
               
199-561
               

               
Cow position:
               
chr4:54455534-54455161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
199-564
               

               
Cow position:
               
chr4:48152558-48152184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 74
               

               
Conread position:
               
199-569
               

               
Cow position:
               
chr4:4319339-4318960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
114, 62
               

               
Conread position:
               
199-574
               

               
Cow position:
               
chr4:1026419-1026043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 147
               

               
Conread position:
               
199-574
               

               
Cow position:
               
chr4:46477129-46476759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
199-577
               

               
Cow position:
               
chr4:12127833-12127435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
199-577
               

               
Cow position:
               
chr4:24810633-24810249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
112, 41
               

               
Conread position:
               
199-578
               

               
Cow position:
               
chr4:36841089-36841463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
112, 123
               

               
Conread position:
               
199-580
               

               
Cow position:
               
chr4:85505-85898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
199-580
               

               
Cow position:
               
chr4:51727882-51728276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 301
               

               
Conread position:
               
199-581
               

               
Cow position:
               
chr4:3340761-3341161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
199-584
               

               
Cow position:
               
chr4:61897729-61897342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
199-585
               

               
Cow position:
               
chr4:29106709-29107119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 193
               

               
Conread position:
               
199-586
               

               
Cow position:
               
chr4:33623528-33623921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
199-589
               

               
Cow position:
               
chr4:62983744-62983345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 216
               

               
Conread position:
               
199-591
               

               
Cow position:
               
chr4:3687738-3688146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
199-595
               

               
Cow position:
               
chr4:10916032-10915611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 165
               

               
Conread position:
               
200-442
               

               
Cow position:
               
chr4:20139709-20139454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
200-577
               

               
Cow position:
               
chr4:35981800-35982200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 269
               

               
Conread position:
               
200-582
               

               
Cow position:
               
chr4:34641918-34641519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
201-385
               

               
Cow position:
               
chr4:56435616-56435810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
201-440
               

               
Cow position:
               
chr4:46552508-46552276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
201-447
               

               
Cow position:
               
chr4:24744603-24744338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
201-477
               

               
Cow position:
               
chr4:25359420-25359695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
201-557
               

               
Cow position:
               
chr4:19699914-19700288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 216
               

               
Conread position:
               
201-558
               

               
Cow position:
               
chr4:4185932-4186299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 151
               

               
Conread position:
               
201-563
               

               
Cow position:
               
chr4:61391396-61391047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
110, 119
               

               
Conread position:
               
201-575
               

               
Cow position:
               
chr4:51851008-51851413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
201-576
               

               
Cow position:
               
chr4:42423990-42423607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
201-589
               

               
Cow position:
               
chr4:29384412-29384034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
202-428
               

               
Cow position:
               
chr4:19497442-19497217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
204-355
               

               
Cow position:
               
chr4:63262361-63262218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
205-383
               

               
Cow position:
               
chr4:22744137-22744315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 114
               

               
Conread position:
               
205-409
               

               
Cow position:
               
chr4:24458283-24458073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
205-442
               

               
Cow position:
               
chr4:14470758-14470507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
90, 155
               

               
Conread position:
               
205-577
               

               
Cow position:
               
chr4:29291335-29291708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
103, 21
               

               
Conread position:
               
205-589
               

               
Cow position:
               
chr4:28772251-28771855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
205-594
               

               
Cow position:
               
chr4:25356490-25356108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
206-479
               

               
Cow position:
               
chr4:7430136-7430420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
206-501
               

               
Cow position:
               
chr4:9815535-9815227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
93, 280
               

               
Conread position:
               
206-562
               

               
Cow position:
               
chr4:66172985-66172609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
82, 125
               

               
Conread position:
               
207-502
               

               
Cow position:
               
chr4:53100623-53100923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
207-586
               

               
Cow position:
               
chr4:40414814-40414420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 374
               

               
Conread position:
               
209-456
               

               
Cow position:
               
chr4:21233058-21232797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
87, 146
               

               
Conread position:
               
210-520
               

               
Cow position:
               
chr4:33097159-33096842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 146
               

               
Conread position:
               
210-555
               

               
Cow position:
               
chr4:66547950-66547584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
211-403
               

               
Cow position:
               
chr4:13832783-13832584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
211-569
               

               
Cow position:
               
chr4:17186535-17186156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
78, 208
               

               
Conread position:
               
212-501
               

               
Cow position:
               
chr4:33433445-33433138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 283
               

               
Conread position:
               
212-501
               

               
Cow position:
               
chr4:65650306-65650013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 147
               

               
Conread position:
               
212-531
               

               
Cow position:
               
chr4:62921043-62920721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 104
               

               
Conread position:
               
215-559
               

               
Cow position:
               
chr4:28839447-28839793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
216-386
               

               
Cow position:
               
chr4:56233510-56233689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
216-416
               

               
Cow position:
               
chr4:3689531-3689741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
216-447
               

               
Cow position:
               
chr4:17112054-17111806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
91, 209
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chr4:16799370-16799105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
216-487
               

               
Cow position:
               
chr4:12049068-12049354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
94, 209
               

               
Conread position:
               
216-557
               

               
Cow position:
               
chr4:19435083-19435430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
216-559
               

               
Cow position:
               
chr4:53134429-53134780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
216-566
               

               
Cow position:
               
chr4:34022764-34022397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 365
               

               
Conread position:
               
216-571
               

               
Cow position:
               
chr4:509080-508717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
216-575
               

               
Cow position:
               
chr4:3421450-3421822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 361
               

               
Conread position:
               
216-586
               

               
Cow position:
               
chr4:58248230-58248611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
219-555
               

               
Cow position:
               
chr4:54479078-54478735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
78, 131
               

               
Conread position:
               
220-577
               

               
Cow position:
               
chr4:56240022-56239666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
220-586
               

               
Cow position:
               
chr4:45685296-45685661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
223-501
               

               
Cow position:
               
chr4:54190920-54191209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
224-442
               

               
Cow position:
               
chr4:33395863-33395635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
224-527
               

               
Cow position:
               
chr4:69305482-69305779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
212, 75
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr4:20147016-20147385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
226-439
               

               
Cow position:
               
chr4:25984059-25984276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
226-447
               

               
Cow position:
               
chr4:23854028-23854248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
226-479
               

               
Cow position:
               
chr4:42922019-42921760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
226-559
               

               
Cow position:
               
chr4:17774521-17774182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
71, 236
               

               
Conread position:
               
226-572
               

               
Cow position:
               
chr4:37915505-37915143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 183
               

               
Conread position:
               
226-586
               

               
Cow position:
               
chr4:18974264-18974637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
228-558
               

               
Cow position:
               
chr4:19501249-19500906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
228-577
               

               
Cow position:
               
chr4:47730693-47731066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
228-586
               

               
Cow position:
               
chr4:2099468-2099841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 323
               

               
Conread position:
               
229-559
               

               
Cow position:
               
chr4:69169509-69169832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
258, 69
               

               
Conread position:
               
231-501
               

               
Cow position:
               
chr4:59377753-59378029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
233-586
               

               
Cow position:
               
chr4:36290468-36290833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
80, 260
               

               
Conread position:
               
241-558
               

               
Cow position:
               
chr4:19118854-19119201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
244-576
               

               
Cow position:
               
chr4:48409415-48409085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 149
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr4:30169970-30169711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
246-584
               

               
Cow position:
               
chr4:20027248-20026894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 212
               

               
Conread position:
               
249-582
               

               
Cow position:
               
chr4:54927584-54927225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
44, 337
               

               
Conread position:
               
255-541
               

               
Cow position:
               
chr4:25537407-25537715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
52, 212
               

               
Conread position:
               
255-559
               

               
Cow position:
               
chr4:21874036-21874361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
257-447
               

               
Cow position:
               
chr4:13771525-13771333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
259-525
               

               
Cow position:
               
chr4:68889691-68889422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 233
               

               
Conread position:
               
263-502
               

               
Cow position:
               
chr4:48396924-48396677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 229
               

               
Conread position:
               
268-559
               

               
Cow position:
               
chr4:19578278-19578566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
268-577
               

               
Cow position:
               
chr4:65463610-65463311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
272-575
               

               
Cow position:
               
chr4:62471972-62472276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
278-442
               

               
Cow position:
               
chr4:19493451-19493618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
279-502
               

               
Cow position:
               
chr4:10851549-10851328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
279-590
               

               
Cow position:
               
chr4:19333288-19333595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
286-559
               

               
Cow position:
               
chr4:59002226-59001955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
201, 7
               

               
Conread position:
               
289-586
               

               
Cow position:
               
chr4:69290829-69290528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
192, 58
               

               
Conread position:
               
299-490
               

               
Cow position:
               
chr4:66136685-66136497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
299-502
               

               
Cow position:
               
chr4:17084421-17084216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 173
               

               
Conread position:
               
299-559
               

               
Cow position:
               
chr4:1419142-1419407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
299-576
               

               
Cow position:
               
chr4:11969383-11969651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
181, 38
               

               
Conread position:
               
299-576
               

               
Cow position:
               
chr4:38157171-38156891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
46, 187
               

               
Conread position:
               
299-577
               

               
Cow position:
               
chr4:46566554-46566271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
51, 245
               

               
Conread position:
               
299-581
               

               
Cow position:
               
chr4:32693704-32693991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
299-586
               

               
Cow position:
               
chr4:60131142-60131436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
299-589
               

               
Cow position:
               
chr4:14542756-14542463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 43
               

               
Conread position:
               
300-460
               

               
Cow position:
               
chr4:13991034-13990878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
300-500
               

               
Cow position:
               
chr4:19408079-19407879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chr4:44449585-44449386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 67
               

               
Conread position:
               
300-577
               

               
Cow position:
               
chr4:37991518-37991794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
192, 47
               

               
Conread position:
               
300-586
               

               
Cow position:
               
chr4:4085200-4084896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
301-501
               

               
Cow position:
               
chr4:45775417-45775216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
301-559
               

               
Cow position:
               
chr4:60719021-60719275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 184
               

               
Conread position:
               
302-491
               

               
Cow position:
               
chr4:49826176-49826362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
305-460
               

               
Cow position:
               
chr4:620208-620054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
305-496
               

               
Cow position:
               
chr4:61478527-61478722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
305-583
               

               
Cow position:
               
chr4:8182714-8182427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
308-479
               

               
Cow position:
               
chr4:20505153-20504987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chr4:19323901-19324096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
308-559
               

               
Cow position:
               
chr4:52832090-52831832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
308-586
               

               
Cow position:
               
chr4:45705974-45706248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
178, 50
               

               
Conread position:
               
309-574
               

               
Cow position:
               
chr4:48422805-48423064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 139
               

               
Conread position:
               
310-559
               

               
Cow position:
               
chr4:34509769-34510012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 175
               

               
Conread position:
               
312-502
               

               
Cow position:
               
chr4:54541708-54541516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
31, 174
               

               
Conread position:
               
314-571
               

               
Cow position:
               
chr4:17851318-17851065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
314-581
               

               
Cow position:
               
chr4:28701289-28701550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
320-502
               

               
Cow position:
               
chr4:65131514-65131333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 153
               

               
Conread position:
               
323-554
               

               
Cow position:
               
chr4:60506219-60506454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
325-580
               

               
Cow position:
               
chr4:46435268-46435538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
327-584
               

               
Cow position:
               
chr4:38210030-38209772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
24, 242
               

               
Conread position:
               
329-584
               

               
Cow position:
               
chr4:19431748-19431482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 146
               

               
Conread position:
               
330-585
               

               
Cow position:
               
chr4:44903241-44903490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
336-576
               

               
Cow position:
               
chr4:60141561-60141327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
336-586
               

               
Cow position:
               
chr4:18951928-18952187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
340-559
               

               
Cow position:
               
chr4:10558496-10558719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
344-559
               

               
Cow position:
               
chr4:44854326-44854104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
349-561
               

               
Cow position:
               
chr4:386422-386209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
349-575
               

               
Cow position:
               
chr4:68590746-68590969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
349-586
               

               
Cow position:
               
chr4:5727813-5728044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 114
               

               
Conread position:
               
358-551
               

               
Cow position:
               
chr4:26901306-26901497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
164, 125
               

               
Conread position:
               
358-557
               

               
Cow position:
               
chr4:4295565-4295759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
164, 108
               

               
Conread position:
               
358-557
               

               
Cow position:
               
chr4:34653890-34653694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
164, 108
               

               
Conread position:
               
358-577
               

               
Cow position:
               
chr4:21506977-21506762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
91, 95
               

               
Conread position:
               
358-594
               

               
Cow position:
               
chr4:18099083-18098844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
130, 209
               

               
Conread position:
               
358-595
               

               
Cow position:
               
chr4:33838821-33838581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
359-559
               

               
Cow position:
               
chr4:43916268-43916476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
359-577
               

               
Cow position:
               
chr4:60527160-60527382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
361-559
               

               
Cow position:
               
chr4:21161087-21161288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 94
               

               
Conread position:
               
365-580
               

               
Cow position:
               
chr4:41907596-41907376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
366-563
               

               
Cow position:
               
chr4:13995374-13995575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
367-584
               

               
Cow position:
               
chr4:39007495-39007706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
372-587
               

               
Cow position:
               
chr4:33360099-33360302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
150, 19
               

               
Conread position:
               
380-581
               

               
Cow position:
               
chr4:42374155-42373950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 100
               

               
Conread position:
               
387-594
               

               
Cow position:
               
chr4:3519429-3519638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
394-588
               

               
Cow position:
               
chr4:22215496-22215303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 89
               

               
Conread position:
               
395-586
               

               
Cow position:
               
chr4:27656993-27657180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 12
               

               
Conread position:
               
397-577
               

               
Cow position:
               
chr4:28660533-28660346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 174
               

               
Conread position:
               
412-559
               

               
Cow position:
               
chr4:39569236-39569380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 32
               
Show alignments to all cow chromosomes.