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Cow genome map

           
Conread name:
           
Emb1-C0005185_L09
        

               
Conread position:
               
2-352
               

               
Cow position:
               
chr10:8326427-8326069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr10:29723159-29722827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr10:40461971-40462315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
5-344
               

               
Cow position:
               
chr10:9945381-9945035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr10:21739854-21739530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr10:34286153-34286478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr10:2120117-2119761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 149
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr10:21399776-21399419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
96, 276
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr10:19544480-19544162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 109
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr10:42111324-42111673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 196
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr10:125293-125496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr10:8290879-8291137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr10:38537596-38537246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr10:16926435-16926785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr10:19512494-19512833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr10:29845747-29845393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr10:39040407-39040043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-350
               

               
Cow position:
               
chr10:22102138-22102492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 267
               

               
Conread position:
               
11-359
               

               
Cow position:
               
chr10:1378407-1378771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
12-344
               

               
Cow position:
               
chr10:19727597-19727255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr10:14334945-14334593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 197
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr10:32701632-32701980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
18-250
               

               
Cow position:
               
chr10:64145837-64146075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
12, 231
               

               
Conread position:
               
20-340
               

               
Cow position:
               
chr10:24311457-24311118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr10:20370167-20369822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr10:57501731-57502062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
23-347
               

               
Cow position:
               
chr10:58097104-58096773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
79, 188
               

               
Conread position:
               
48-349
               

               
Cow position:
               
chr10:24976831-24976520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 168
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr11:24336663-24336315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr11:3252329-3252093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
119, 196
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr11:18887387-18887744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
98, 273
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr11:66438591-66438267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 111
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr11:47759750-47759425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 276
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr11:26548044-26548418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr11:17546696-17547062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 215
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr11:28108670-28109037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr11:50027340-50027066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 111
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr11:29232474-29232124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr11:80473731-80473419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr11:54484877-54484524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
11-319
               

               
Cow position:
               
chr11:19101957-19101630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
90, 144
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:10847989-10848343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:12357878-12357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
66, 201
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:24393854-24394206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
90, 144
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:26124388-26124037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:29668069-29667713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:41170157-41169801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:43514094-43513738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:44156709-44156357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr11:71330131-71330488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr11:38834894-38834542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr11:58134935-58135289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr11:44582791-44582523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr11:4269858-4269509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr11:28054065-28053722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr11:85393264-85392933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr12:41380501-41380779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr12:35313849-35313620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr12:14661805-14661476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 171
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr12:36449401-36449744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chr12:1403319-1403668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
91, 287
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr12:600530-600186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr12:6405817-6405462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
12-314
               

               
Cow position:
               
chr12:5369640-5369951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 235
               

               
Conread position:
               
12-326
               

               
Cow position:
               
chr12:27513166-27513497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 94
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr12:11099067-11099402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 138
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr12:12292807-12293137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
25-273
               

               
Cow position:
               
chr12:22204903-22204643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr13:12633167-12633506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
139, 5
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr13:60466927-60467295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
6-306
               

               
Cow position:
               
chr13:52646274-52645961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr13:34424363-34424688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 205
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr13:32545982-32546351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr13:21696853-21697220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr13:50110053-50110420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr13:17331159-17330801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 89
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr13:6667528-6667171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
9-349
               

               
Cow position:
               
chr13:30278224-30278575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr13:13900475-13900827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr13:35757879-35758242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr13:1592545-1592193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr13:3653713-3653358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr13:15923773-15923421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr13:30303890-30304251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr13:31611700-31611349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
90, 289
               

               
Conread position:
               
12-295
               

               
Cow position:
               
chr13:26844636-26844919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
14-327
               

               
Cow position:
               
chr13:15519897-15519565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 197
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr13:15543151-15543502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr13:34041724-34041377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 194
               

               
Conread position:
               
17-346
               

               
Cow position:
               
chr13:14178225-14177883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
85, 197
               

               
Conread position:
               
18-340
               

               
Cow position:
               
chr13:21602330-21602661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr13:57024314-57024654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
82, 291
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr13:28670646-28670380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 198
               

               
Conread position:
               
25-205
               

               
Cow position:
               
chr13:33335695-33335505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
26-322
               

               
Cow position:
               
chr13:34765832-34765530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
75, 106
               

               
Conread position:
               
48-330
               

               
Cow position:
               
chr13:20062655-20062365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 124
               

               
Conread position:
               
70-311
               

               
Cow position:
               
chr13:43589997-43590249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 142
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr13:31506342-31506577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr14:9100248-9099885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 128
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr14:10475607-10475282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr14:190441-190786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
97, 208
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr14:11561556-11561188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 212
               

               
Conread position:
               
6-344
               

               
Cow position:
               
chr14:9046051-9046410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
8-354
               

               
Cow position:
               
chr14:35365780-35365424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
94, 235
               

               
Conread position:
               
9-329
               

               
Cow position:
               
chr14:37455581-37455247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr14:33402167-33402527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
11-246
               

               
Cow position:
               
chr14:5512305-5512552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:5529549-5529897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 289
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:12742586-12742232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:16919233-16918882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:17000578-17000222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:37224672-37225027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:48253830-48253478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr14:50111273-50111630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
17-322
               

               
Cow position:
               
chr14:17685886-17686203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 194
               

               
Conread position:
               
17-338
               

               
Cow position:
               
chr14:33673906-33674237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
85, 69
               

               
Conread position:
               
17-345
               

               
Cow position:
               
chr14:29580661-29581000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
83, 77
               

               
Conread position:
               
18-347
               

               
Cow position:
               
chr14:35424581-35424916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
19-345
               

               
Cow position:
               
chr14:33488895-33489239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 201
               

               
Conread position:
               
23-274
               

               
Cow position:
               
chr14:40341544-40341808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 80
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr14:16272801-16272459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 318
               

               
Conread position:
               
31-347
               

               
Cow position:
               
chr14:13863596-13863260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 271
               

               
Conread position:
               
32-347
               

               
Cow position:
               
chr14:12610952-12611266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 213
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr15:13674982-13675334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr15:47772625-47772977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
96, 203
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr15:51675195-51675554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr15:23310647-23310376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 131
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr15:5207371-5207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
9-346
               

               
Cow position:
               
chr15:6592137-6591780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 341
               

               
Conread position:
               
9-346
               

               
Cow position:
               
chr15:13391587-13391229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr15:2017050-2017399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 144
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr15:5980829-5981187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr15:14581879-14581526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 271
               

               
Conread position:
               
10-354
               

               
Cow position:
               
chr15:22378386-22378749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
11-273
               

               
Cow position:
               
chr15:3260835-3260562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr15:44070411-44070731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr15:18332346-18331992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr15:524376-524032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr15:8811541-8811186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr15:18577194-18577550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr15:19737566-19737220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 232
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr15:51218087-51218436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 144
               

               
Conread position:
               
11-349
               

               
Cow position:
               
chr15:2077141-2077495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-349
               

               
Cow position:
               
chr15:4386243-4386592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr15:4962118-4962473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr15:6155457-6155107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 260
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr15:24295584-24295923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 197
               

               
Conread position:
               
17-232
               

               
Cow position:
               
chr15:53136731-53136506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 194
               

               
Conread position:
               
17-321
               

               
Cow position:
               
chr15:35736278-35736594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 203
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr15:9003632-9003316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr15:15346625-15346275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 138
               

               
Conread position:
               
26-350
               

               
Cow position:
               
chr15:5952815-5952489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 182
               

               
Conread position:
               
29-345
               

               
Cow position:
               
chr15:4922649-4922981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 183
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr15:16595356-16595667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr16:10565626-10565339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
3-341
               

               
Cow position:
               
chr16:25080938-25081275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
130, 85
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr16:49471797-49472127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
8-346
               

               
Cow position:
               
chr16:23670834-23671190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 207
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr16:1860360-1860710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
92, 144
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr16:56119818-56120164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
11-311
               

               
Cow position:
               
chr16:25457323-25457010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
90, 202
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr16:15476981-15477300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chr16:25441767-25442093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
90, 293
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chr16:28470961-28470640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 290
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr16:1567312-1566963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
90, 103
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:2482999-2482645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 330
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:5484871-5485225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:8815966-8815610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:14665670-14665315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
90, 216
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:15185212-15185566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:15493643-15493998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:23535751-23535396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:25342109-25342452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr16:31591779-31591422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 220
               

               
Conread position:
               
12-275
               

               
Cow position:
               
chr16:15526015-15526291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr16:9209111-9209457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
90, 151
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr16:2410820-2410474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
84, 138
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr16:4478837-4478476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 299
               

               
Conread position:
               
18-276
               

               
Cow position:
               
chr16:26651375-26651643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
23-349
               

               
Cow position:
               
chr16:49279592-49279929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 186
               

               
Conread position:
               
27-347
               

               
Cow position:
               
chr16:10438408-10438746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 184
               

               
Conread position:
               
61-347
               

               
Cow position:
               
chr16:15567444-15567750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
6-313
               

               
Cow position:
               
chr17:8209815-8210137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 311
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr17:6120419-6120746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 291
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr17:6069261-6069616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 210
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr17:34156825-34157192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 215
               

               
Conread position:
               
11-278
               

               
Cow position:
               
chr17:3642120-3641843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr17:24029292-24028939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr17:2580334-2580690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr17:11087010-11086661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 312
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr17:19268117-19267761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
11-354
               

               
Cow position:
               
chr17:15324541-15324902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 210
               

               
Conread position:
               
18-313
               

               
Cow position:
               
chr17:239062-239377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 233
               

               
Conread position:
               
19-320
               

               
Cow position:
               
chr17:1787217-1786903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
83, 135
               

               
Conread position:
               
21-245
               

               
Cow position:
               
chr17:42265688-42265917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 101
               

               
Conread position:
               
26-354
               

               
Cow position:
               
chr17:6611762-6611415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 197
               

               
Conread position:
               
29-344
               

               
Cow position:
               
chr17:31532950-31533272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr18:51239204-51239521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr18:18496120-18495772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr18:33142167-33142529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 114
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr18:19353275-19353601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr18:6061882-6061553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
9-346
               

               
Cow position:
               
chr18:16869346-16869687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
11-310
               

               
Cow position:
               
chr18:32653138-32653457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr18:27988112-27988442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 144
               

               
Conread position:
               
11-331
               

               
Cow position:
               
chr18:16089062-16089396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
122, 142
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr18:14131314-14131669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr18:23798570-23798922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr18:27837389-27837034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr18:28972963-28972612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr18:36509260-36509618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
91, 203
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr18:52651833-52652185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 207
               

               
Conread position:
               
11-349
               

               
Cow position:
               
chr18:14416906-14417257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 197
               

               
Conread position:
               
12-199
               

               
Cow position:
               
chr18:16666154-16665962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 95
               

               
Conread position:
               
12-343
               

               
Cow position:
               
chr18:17197490-17197140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr18:35800089-35799751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
15-346
               

               
Cow position:
               
chr18:51275119-51274772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 203
               

               
Conread position:
               
17-339
               

               
Cow position:
               
chr18:25364132-25364467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 212
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr18:16175689-16175343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
84, 194
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr18:29073925-29074263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 132
               

               
Conread position:
               
21-354
               

               
Cow position:
               
chr18:36255977-36255643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 158
               

               
Conread position:
               
26-340
               

               
Cow position:
               
chr18:30848735-30848403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
76, 294
               

               
Conread position:
               
28-347
               

               
Cow position:
               
chr18:38343339-38343017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
88-345
               

               
Cow position:
               
chr18:44402700-44402974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr19:438522-438161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr19:7070232-7070582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chr19:51674182-51673836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr19:342142-342365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
11-273
               

               
Cow position:
               
chr19:33942530-33942809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
90, 146
               

               
Conread position:
               
11-323
               

               
Cow position:
               
chr19:7489270-7489600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 316
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr19:2273457-2273102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr19:33874351-33874705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr19:39391434-39391788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr19:35384683-35384333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr19:11522237-11521888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
82, 92
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr19:5729804-5730150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
18-347
               

               
Cow position:
               
chr19:50723484-50723833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr19:4386558-4386893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
20-349
               

               
Cow position:
               
chr19:5162765-5162434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 131
               

               
Conread position:
               
23-274
               

               
Cow position:
               
chr19:28405770-28405506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
78, 259
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr19:40851510-40851170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr19:27036649-27036324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
170, 63
               

               
Conread position:
               
29-320
               

               
Cow position:
               
chr19:204924-205231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 296
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr2:38013012-38013351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 307
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr2:47622260-47621904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
98, 212
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr2:33088480-33088838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr2:46932123-46931763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 208
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr2:2356079-2355712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr2:2412435-2412068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
95, 204
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr2:5862344-5862132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 173
               

               
Conread position:
               
8-332
               

               
Cow position:
               
chr2:64769328-64768994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 172
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr2:10268294-10267943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
93, 147
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr2:22078147-22078509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr2:24147229-24147584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr2:73193473-73193698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr2:36052643-36052382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr2:1691341-1691690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr2:5903954-5903600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 202
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr2:6961881-6962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 228
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr2:45964750-45964501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 193
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr2:28793614-28793966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 203
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:282323-281970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:8118908-8119265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:10185858-10185507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 199
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:11158752-11158401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
91, 196
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:16900619-16900980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:19011712-19012075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:28649232-28648881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:36980747-36981100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 199
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:50077967-50078308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr2:81257540-81257889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-350
               

               
Cow position:
               
chr2:47811212-47811572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
12-328
               

               
Cow position:
               
chr2:14777474-14777159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
183, 89
               

               
Conread position:
               
12-345
               

               
Cow position:
               
chr2:74857589-74857935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 199
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr2:53330131-53330483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
88, 197
               

               
Conread position:
               
16-347
               

               
Cow position:
               
chr2:13045342-13044992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 195
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr2:3789470-3789134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 259
               

               
Conread position:
               
20-300
               

               
Cow position:
               
chr2:52352422-52352709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr2:11686888-11687214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 148
               

               
Conread position:
               
20-349
               

               
Cow position:
               
chr2:289402-289059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 150
               

               
Conread position:
               
20-349
               

               
Cow position:
               
chr2:5889267-5888923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 181
               

               
Conread position:
               
21-347
               

               
Cow position:
               
chr2:16282729-16283059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 45
               

               
Conread position:
               
22-314
               

               
Cow position:
               
chr2:14884693-14884986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr2:64580510-64580177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr2:24454118-24453808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
24-347
               

               
Cow position:
               
chr2:2451576-2451908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
29-347
               

               
Cow position:
               
chr2:42670321-42669984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 209
               

               
Conread position:
               
31-343
               

               
Cow position:
               
chr2:31298170-31298508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
6-239
               

               
Cow position:
               
chr20:16105660-16105416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr20:31498217-31497900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 206
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr20:27870083-27870443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 205
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr20:5465928-5466276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 93
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr20:24615986-24615714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
11-310
               

               
Cow position:
               
chr20:28161704-28162021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-346
               

               
Cow position:
               
chr20:12569405-12569760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr20:5535819-5536176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
90, 169
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr20:13763792-13764141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr20:15096996-15096650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr20:23799768-23800124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-349
               

               
Cow position:
               
chr20:23468778-23468421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
12-324
               

               
Cow position:
               
chr20:7083522-7083195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
126, 91
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr20:5229622-5229275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 222
               

               
Conread position:
               
13-338
               

               
Cow position:
               
chr20:13433713-13433376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 101
               

               
Conread position:
               
19-239
               

               
Cow position:
               
chr20:16428904-16428674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
19-347
               

               
Cow position:
               
chr20:3678554-3678224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
20-198
               

               
Cow position:
               
chr20:872073-871892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
30-347
               

               
Cow position:
               
chr20:5791262-5791578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
46-348
               

               
Cow position:
               
chr20:37581137-37581455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr21:36580-36224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 269
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr21:30316263-30316549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
130, 88
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr21:1287225-1286854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
96, 334
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr21:37935818-37936143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
9-216
               

               
Cow position:
               
chr21:4184901-4185119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr21:42914362-42914682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr21:218048-218379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
264, 89
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr21:146928-147278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 316
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr21:2882739-2882386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
90, 329
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr21:5840265-5839911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr21:35144756-35145111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr21:30082-30382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 204
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr21:33253181-33253534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 198
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr21:31515320-31514964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
48-347
               

               
Cow position:
               
chr21:23297786-23297475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr21:30598437-30598130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr21:45786391-45786079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr22:40721295-40721563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
6-279
               

               
Cow position:
               
chr22:1281909-1281618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 230
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chr22:537922-538281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr22:42992001-42992356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
6-350
               

               
Cow position:
               
chr22:16201748-16202113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr22:522571-522214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr22:36184582-36184941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
92, 258
               

               
Conread position:
               
11-305
               

               
Cow position:
               
chr22:44457881-44458196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 71
               

               
Conread position:
               
11-306
               

               
Cow position:
               
chr22:41418488-41418189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 187
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr22:6332537-6332889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
87, 93
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr22:15313125-15312769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
12-311
               

               
Cow position:
               
chr22:12730856-12730548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 142
               

               
Conread position:
               
15-339
               

               
Cow position:
               
chr22:4242788-4242450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 247
               

               
Conread position:
               
17-280
               

               
Cow position:
               
chr22:44397278-44397564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr22:559878-559526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr22:19142857-19142511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 138
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr22:21590170-21590516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 194
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr22:44934808-44935151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr22:36860692-36860358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 73
               

               
Conread position:
               
35-359
               

               
Cow position:
               
chr22:37292815-37292470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
48-304
               

               
Cow position:
               
chr22:35913295-35913030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
48-344
               

               
Cow position:
               
chr22:38175959-38176268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 261
               

               
Conread position:
               
48-347
               

               
Cow position:
               
chr22:1520160-1519838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr23:16614617-16614290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr23:19949778-19949453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 296
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr23:4817845-4818202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 109
               

               
Conread position:
               
9-343
               

               
Cow position:
               
chr23:29451516-29451176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
93, 110
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr23:22146473-22146131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
11-305
               

               
Cow position:
               
chr23:15219076-15218766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr23:965669-965348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 291
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chr23:2717220-2717537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
11-340
               

               
Cow position:
               
chr23:14964217-14963876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-344
               

               
Cow position:
               
chr23:36030548-36030200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr23:15526395-15526745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-349
               

               
Cow position:
               
chr23:2758714-2759072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
12-301
               

               
Cow position:
               
chr23:2341904-2342203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 91
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr23:1956732-1957065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
87, 135
               

               
Conread position:
               
17-320
               

               
Cow position:
               
chr23:11779616-11779931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
84, 194
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr23:3880249-3879905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
88, 199
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr23:4889519-4889866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
81, 201
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr23:4639781-4639447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
38-347
               

               
Cow position:
               
chr23:17186569-17186888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr24:16097458-16097770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 197
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr24:6332787-6332468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 216
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr24:14871406-14871053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr24:12143428-12143204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
10-347
               

               
Cow position:
               
chr24:13233163-13233523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
91, 254
               

               
Conread position:
               
11-346
               

               
Cow position:
               
chr24:12129155-12128798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr24:6406942-6407300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr24:12334846-12334491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
94, 144
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr24:17696070-17695714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr24:19834304-19834662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 203
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr24:22972003-22972358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr24:29188203-29188558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
17-311
               

               
Cow position:
               
chr24:9544983-9545288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
117, 81
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr24:147691-147344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 150
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr24:34494239-34493916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 196
               

               
Conread position:
               
21-347
               

               
Cow position:
               
chr24:38638461-38638800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 198
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr24:31114572-31114885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr25:30149933-30149595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
10-346
               

               
Cow position:
               
chr25:36636813-36636454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
92, 207
               

               
Conread position:
               
11-236
               

               
Cow position:
               
chr25:26880060-26880290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr25:18888870-18888549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr25:13781907-13782261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 340
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr25:20630503-20630856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr25:22148413-22148764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
12-315
               

               
Cow position:
               
chr25:24216586-24216271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 294
               

               
Conread position:
               
12-321
               

               
Cow position:
               
chr25:27525264-27524949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 107
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr25:34346132-34345811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr26:8614336-8614000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 145
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr26:18853106-18853473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr26:6848552-6848197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr26:9561889-9561546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr26:17396021-17395666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr26:19350622-19350275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
90, 150
               

               
Conread position:
               
16-349
               

               
Cow position:
               
chr26:16857212-16856871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 76
               

               
Conread position:
               
3-340
               

               
Cow position:
               
chr27:28892418-28892772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
11-273
               

               
Cow position:
               
chr27:15036759-15036492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr27:1210184-1210533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr27:3234713-3234353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr27:15636519-15636164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 200
               

               
Conread position:
               
12-339
               

               
Cow position:
               
chr27:17319666-17319326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 136
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr27:9330560-9330914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
71, 320
               

               
Conread position:
               
20-320
               

               
Cow position:
               
chr27:2377364-2377668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr28:6538395-6538071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 81
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr28:1505740-1506095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr28:8379927-8380292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr28:22260281-22259923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
93, 203
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr28:29761060-29760701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr28:12151177-12151535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
125, 145
               

               
Conread position:
               
10-273
               

               
Cow position:
               
chr28:22064518-22064247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr28:1813990-1813637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
90, 292
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr28:3191382-3191027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr28:13460847-13461204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr28:18519576-18519223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
90, 291
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr28:29820869-29821224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr28:10460728-10460381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr28:32791499-32791153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
87, 195
               

               
Conread position:
               
17-322
               

               
Cow position:
               
chr28:5113417-5113101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 283
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr28:26425376-26425026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
85, 194
               

               
Conread position:
               
19-306
               

               
Cow position:
               
chr28:28749899-28750187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
142, 82
               

               
Conread position:
               
23-347
               

               
Cow position:
               
chr28:28439701-28440040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 156
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr28:2988195-2987859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
48-345
               

               
Cow position:
               
chr28:5750797-5750481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr28:9268768-9269095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
72, 47
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr29:38237694-38237362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
6-266
               

               
Cow position:
               
chr29:43791256-43791528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr29:9642928-9642644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
95, 268
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr29:35815142-35814817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr29:43408784-43408466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr29:6265436-6265109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 298
               

               
Conread position:
               
11-339
               

               
Cow position:
               
chr29:2100687-2101035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr29:14210730-14210378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr29:7430380-7430025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr29:10823135-10822789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 76
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr29:20252003-20252360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr29:23976962-23977316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr29:25931702-25931337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr29:38227817-38228171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 51
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr29:6213366-6213714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 197
               

               
Conread position:
               
17-220
               

               
Cow position:
               
chr29:2840533-2840319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 194
               

               
Conread position:
               
17-306
               

               
Cow position:
               
chr29:19622439-19622136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr29:37164983-37165247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 189
               

               
Conread position:
               
20-322
               

               
Cow position:
               
chr29:31023941-31023633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr29:45205350-45205692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 157
               

               
Conread position:
               
21-317
               

               
Cow position:
               
chr29:21264789-21265093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 199
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr29:34873672-34874010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 168
               

               
Conread position:
               
29-347
               

               
Cow position:
               
chr29:45586519-45586188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 179
               

               
Conread position:
               
48-344
               

               
Cow position:
               
chr29:39368750-39369052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chr3:62733013-62733250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 151
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr3:79431959-79431604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
133, 149
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr3:63915367-63915042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr3:10240405-10240767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr3:30618177-30617816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr3:27919171-27919538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 205
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr3:57753544-57753911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr3:23289584-23289303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr3:77424385-77424661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
68, 210
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr3:24445328-24444999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr3:42447859-42448142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr3:29579377-29579732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 93
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr3:45975254-45975603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 261
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr3:46503298-46503662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
93, 108
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr3:56339667-56339312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
10-348
               

               
Cow position:
               
chr3:58165838-58166195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
11-310
               

               
Cow position:
               
chr3:78026666-78026353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 170
               

               
Conread position:
               
11-322
               

               
Cow position:
               
chr3:18541387-18541058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:5884297-5884640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 226
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:21181947-21181590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:40824145-40824497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:48058601-48058257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
123, 95
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:49544456-49544101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:53516365-53516708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 198
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr3:66620937-66621287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
123, 217
               

               
Conread position:
               
11-348
               

               
Cow position:
               
chr3:11541492-11541847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 107
               

               
Conread position:
               
12-321
               

               
Cow position:
               
chr3:56397943-56398260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
90, 185
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr3:2710112-2709763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 204
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chr3:16899605-16899331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 177
               

               
Conread position:
               
19-312
               

               
Cow position:
               
chr3:48229717-48229409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr3:24643997-24644338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 164
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr3:42994910-42994567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 196
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr3:64357026-64356694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 172
               

               
Conread position:
               
49-347
               

               
Cow position:
               
chr3:49136769-49136465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 68
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr3:24458366-24458069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 182
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr4:51042741-51042381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 211
               

               
Conread position:
               
6-313
               

               
Cow position:
               
chr4:45298530-45298213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 273
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr4:5880717-5881076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chr4:18517459-18517726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:1049704-1049347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 330
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:6489803-6489451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 208
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:10882107-10882464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:11361744-11361404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:13493879-13494243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:36896933-36897287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
90, 337
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:43319082-43318727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr4:44726157-44726500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr4:61713044-61712695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 83
               

               
Conread position:
               
17-276
               

               
Cow position:
               
chr4:67681758-67682029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-340
               

               
Cow position:
               
chr4:10093475-10093807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
85, 102
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr4:39270836-39270492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
17-349
               

               
Cow position:
               
chr4:31564739-31564389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr4:60263596-60263247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 162
               

               
Conread position:
               
21-329
               

               
Cow position:
               
chr4:11837091-11836773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 57
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr4:17925387-17925053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr4:11107262-11107017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
83, 233
               

               
Conread position:
               
49-340
               

               
Cow position:
               
chr4:13126195-13125896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
53, 49
               

               
Conread position:
               
54-355
               

               
Cow position:
               
chr4:44647525-44647209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 222
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr4:20604329-20604642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr5:39246164-39245813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 221
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr5:44460133-44460458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr5:45181494-45181169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr5:35300749-35301116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr5:38073682-38074049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr5:51770290-51769950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 56
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr5:4385896-4386251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr5:41956708-41956359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
11-339
               

               
Cow position:
               
chr5:59282975-59283319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 98
               

               
Conread position:
               
11-340
               

               
Cow position:
               
chr5:4069876-4070212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
11-344
               

               
Cow position:
               
chr5:73488901-73488552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 102
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr5:57481883-57481530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr5:10919482-10919831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
90, 198
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr5:34697259-34697612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr5:46737918-46737566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 198
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr5:48808083-48807728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr5:55628647-55629002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr5:64781360-64781005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-354
               

               
Cow position:
               
chr5:30579985-30580357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr5:41528117-41527785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
89, 106
               

               
Conread position:
               
14-235
               

               
Cow position:
               
chr5:32308735-32308504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr5:54791973-54791622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr5:6154238-6153892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
117, 202
               

               
Conread position:
               
19-285
               

               
Cow position:
               
chr5:53703498-53703224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 193
               

               
Conread position:
               
24-328
               

               
Cow position:
               
chr5:52613278-52612968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 93
               

               
Conread position:
               
25-345
               

               
Cow position:
               
chr5:1341362-1341024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 185
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr5:3786589-3786937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
76, 321
               

               
Conread position:
               
26-259
               

               
Cow position:
               
chr5:51313524-51313277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 135
               

               
Conread position:
               
43-347
               

               
Cow position:
               
chr5:41929544-41929236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr6:54179795-54180071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr6:58027466-58027787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr6:65882005-65882330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
93, 74
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr6:20560313-20559952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr6:59918281-59918006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr6:8202977-8203328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 294
               

               
Conread position:
               
11-312
               

               
Cow position:
               
chr6:47042405-47042093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr6:8760494-8760146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-345
               

               
Cow position:
               
chr6:27529208-27528849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
75, 347
               

               
Conread position:
               
11-346
               

               
Cow position:
               
chr6:39334073-39333719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
11-346
               

               
Cow position:
               
chr6:39438561-39438915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr6:703013-703365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 290
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr6:5948981-5948632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr6:15279015-15278663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr6:40553777-40553423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
12-272
               

               
Cow position:
               
chr6:65941025-65940755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 213
               

               
Conread position:
               
12-276
               

               
Cow position:
               
chr6:18973611-18973334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 204
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr6:38271686-38272032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 268
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr6:3487624-3487277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 203
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr6:51086742-51087092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 197
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr6:65842424-65842766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 219
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr6:40866515-40866173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
84, 147
               

               
Conread position:
               
25-345
               

               
Cow position:
               
chr6:24239868-24240201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
76, 95
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr6:3276563-3276221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr6:1099341-1099113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
44-347
               

               
Cow position:
               
chr6:17046881-17047204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr7:33759272-33759513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 121
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr7:27583839-27583483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 59
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr7:68333826-68334184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr7:3300274-3299961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
95, 177
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr7:51015149-51015504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 175
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr7:14214482-14214126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 311
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr7:58994479-58994827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 21
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr7:27348791-27348435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 233
               

               
Conread position:
               
11-276
               

               
Cow position:
               
chr7:8144346-8144070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:1371759-1371402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:10430536-10430181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:13533013-13532664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:14138709-14138353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:21986316-21986659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:34486803-34487156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:39792657-39793011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr7:64240116-64239762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
12-235
               

               
Cow position:
               
chr7:7211108-7210877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
12-349
               

               
Cow position:
               
chr7:40124245-40124603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 256
               

               
Conread position:
               
17-345
               

               
Cow position:
               
chr7:34150200-34150543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
17-346
               

               
Cow position:
               
chr7:18711021-18711361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
119, 85
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr7:5309220-5308872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 203
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr7:21126769-21126420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 203
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr7:42871034-42871385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr7:45948248-45947897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
20-275
               

               
Cow position:
               
chr7:33332456-33332721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 199
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr7:21234114-21233766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
24-274
               

               
Cow position:
               
chr7:41532130-41531872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 62
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr7:53407518-53407839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
106-330
               

               
Cow position:
               
chr7:40006866-40006629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr8:45523904-45523634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr8:21584297-21584577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 277
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr8:46147274-46146991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
99, 125
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr8:42158920-42158567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
101, 111
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr8:11564604-11564957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr8:13491443-13491801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 102
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr8:50930060-50929724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
99, 149
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr8:38585272-38584917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
95, 103
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr8:1320112-1320475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr8:61906229-61906597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr8:47682865-47683146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr8:39195143-39194789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 203
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr8:42468735-42469092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr8:42579508-42579157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr8:42817180-42816861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr8:5017252-5017609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 202
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr8:11802895-11803251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 294
               

               
Conread position:
               
9-347
               

               
Cow position:
               
chr8:41644598-41644244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr8:2447298-2447650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 214
               

               
Conread position:
               
11-279
               

               
Cow position:
               
chr8:44243506-44243227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 144
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chr8:38391732-38392036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
147, 87
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:17312098-17312458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:19330787-19331142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:23771712-23772070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:25775600-25775243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:32318477-32318123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:33589450-33589807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr8:42484991-42485345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-350
               

               
Cow position:
               
chr8:47661245-47660888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr8:32815813-32815545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
12-320
               

               
Cow position:
               
chr8:8315385-8315058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
89, 291
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr8:32647446-32647790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
13-311
               

               
Cow position:
               
chr8:38606125-38605810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
17-305
               

               
Cow position:
               
chr8:60061464-60061761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 194
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr8:8401034-8400685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr8:14590821-14590471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
18-340
               

               
Cow position:
               
chr8:4687484-4687825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
83, 193
               

               
Conread position:
               
18-347
               

               
Cow position:
               
chr8:3785718-3786066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 186
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr8:36919479-36919782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr8:76500-76166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
132, 84
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr8:10742581-10742239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr8:14927790-14927454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 155
               

               
Conread position:
               
29-305
               

               
Cow position:
               
chr8:12801506-12801798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
29-347
               

               
Cow position:
               
chr8:50287832-50287499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
72, 259
               

               
Conread position:
               
48-347
               

               
Cow position:
               
chr8:44662584-44662274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr8:11524853-11525149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr9:50729414-50729058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 5
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr9:9646849-9647202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
98, 159
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr9:3148550-3148225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 216
               

               
Conread position:
               
6-344
               

               
Cow position:
               
chr9:28678691-28679049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr9:28440529-28440896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr9:51211401-51211768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chr9:59536819-59537171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 332
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr9:39731330-39731013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr9:10322530-10322848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
11-324
               

               
Cow position:
               
chr9:17305251-17304926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr9:6250026-6250379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 95
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr9:7061356-7061003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 321
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr9:18509087-18508742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 144
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr9:37970470-37970127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr9:29027479-29027131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr9:59482064-59481716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 141
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr9:60277286-60276938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 286
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr9:30673098-30673455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr9:37162081-37161732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr9:51181453-51181097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
18-346
               

               
Cow position:
               
chr9:32296508-32296171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 83
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr9:3543594-3543930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr9:16176504-16176849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr9:28655086-28655428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 193
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr9:26102350-26102053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 192
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr9:4533235-4533574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
48-349
               

               
Cow position:
               
chr9:42310443-42310759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 170
               

               
Conread position:
               
49-343
               

               
Cow position:
               
chr9:19009323-19009012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
49-354
               

               
Cow position:
               
chr9:27035446-27035769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
53-318
               

               
Cow position:
               
chr9:52292177-52292454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
93-322
               

               
Cow position:
               
chr9:60970209-60970439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
60, 137
               

               
Conread position:
               
187-347
               

               
Cow position:
               
chr9:52033616-52033775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chrX:13082384-13082114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
98, 116
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chrX:5304777-5305142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chrX:24195769-24195425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chrX:44388394-44388748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chrX:18767797-18768156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 170
               

               
Conread position:
               
5-350
               

               
Cow position:
               
chrX:21269437-21269066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chrX:30183291-30182953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chrX:41102839-41102480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 215
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chrX:34345861-34346213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chrX:979222-979589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 217
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chrX:35530489-35530846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
96, 276
               

               
Conread position:
               
7-322
               

               
Cow position:
               
chrX:25612686-25613009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
8-344
               

               
Cow position:
               
chrX:17613394-17613041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
115, 93
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chrX:29996568-29996225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
9-349
               

               
Cow position:
               
chrX:1391570-1391929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 255
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chrX:9093190-9093395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chrX:15599597-15599811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:2481998-2481645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:13412500-13412147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:15126604-15126240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:18553062-18553416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
90, 40
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:22488777-22489130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 207
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:23277658-23278010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:23389885-23389532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:23455385-23455031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 200
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:26528610-26528961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:29852933-29852582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chrX:38148225-38148582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
11-348
               

               
Cow position:
               
chrX:18953049-18952695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
90, 289
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chrX:16015805-16015500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 220
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chrX:17491330-17490985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
90, 185
               

               
Conread position:
               
13-349
               

               
Cow position:
               
chrX:13182483-13182139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chrX:12315121-12314765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chrX:27315913-27316262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
19-346
               

               
Cow position:
               
chrX:6014283-6013965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 177
               

               
Conread position:
               
20-236
               

               
Cow position:
               
chrX:16699944-16700166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chrX:39563294-39562994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 276
               

               
Conread position:
               
26-214
               

               
Cow position:
               
chrX:20720642-20720844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 0