Cow genome map
| Conread name: | Emb1-C0005215_E21 |
| Conread position: | 78-439 |
| Cow position: | chr10:1390504-1390146 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 78-448 |
| Cow position: | chr10:53004528-53004158 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 104-447 |
| Cow position: | chr10:54409844-54410188 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 78-448 |
| Cow position: | chr11:14678932-14678552 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 78-448 |
| Cow position: | chr11:41193249-41193612 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 101-223 |
| Cow position: | chr11:12821244-12821124 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 103-447 |
| Cow position: | chr12:37007734-37008077 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 104-448 |
| Cow position: | chr12:5361916-5361578 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 170, 53 |
| Conread position: | 78-448 |
| Cow position: | chr13:40471460-40471089 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 83-447 |
| Cow position: | chr13:6086364-6085995 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 83-448 |
| Cow position: | chr13:44240911-44240550 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 104-448 |
| Cow position: | chr13:19675290-19675624 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 100, 59 |
| Conread position: | 87-447 |
| Cow position: | chr14:41232697-41232335 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 101-448 |
| Cow position: | chr14:14274233-14273879 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 101-448 |
| Cow position: | chr15:28823100-28823450 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 78-435 |
| Cow position: | chr17:3258852-3259200 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 81-447 |
| Cow position: | chr17:40959687-40960052 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 82-200 |
| Cow position: | chr17:28198644-28198527 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 87-447 |
| Cow position: | chr18:21093933-21094288 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 78-445 |
| Cow position: | chr19:48361800-48362177 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 75 |
| Conread position: | 106-449 |
| Cow position: | chr19:54667802-54668148 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 78-443 |
| Cow position: | chr21:1278900-1278536 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 302-448 |
| Cow position: | chr21:19678408-19678548 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 101-447 |
| Cow position: | chr22:33559808-33559447 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 105-446 |
| Cow position: | chr22:44686401-44686725 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 165, 58 |
| Conread position: | 298-448 |
| Cow position: | chr22:20937721-20937574 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 72-448 |
| Cow position: | chr23:10089810-10089443 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 74-446 |
| Cow position: | chr23:14100152-14100523 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 111-433 |
| Cow position: | chr24:26283972-26283660 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 112-448 |
| Cow position: | chr24:43307501-43307852 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 226 |
| Conread position: | 107-448 |
| Cow position: | chr25:38401898-38401549 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 84-448 |
| Cow position: | chr26:18950753-18950383 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 99-449 |
| Cow position: | chr26:19652027-19652364 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 78-448 |
| Cow position: | chr28:9281122-9280760 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 89-448 |
| Cow position: | chr28:17136772-17137133 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 74 |
| Conread position: | 66-448 |
| Cow position: | chr29:21519058-21519436 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 101 |
| Conread position: | 134-436 |
| Cow position: | chr29:36759439-36759748 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 5-166 |
| Cow position: | chr3:21317520-21317684 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 66-448 |
| Cow position: | chr3:10689963-10689585 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 94 |
| Conread position: | 69-435 |
| Cow position: | chr3:36609322-36609689 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 81-448 |
| Cow position: | chr3:20542056-20541682 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 87-448 |
| Cow position: | chr3:68584470-68584822 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 165, 9 |
| Conread position: | 86-448 |
| Cow position: | chr4:26981040-26981406 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 100-448 |
| Cow position: | chr4:33977384-33977026 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 183 |
| Conread position: | 101-448 |
| Cow position: | chr4:64422334-64421992 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 23 |
| Conread position: | 106-445 |
| Cow position: | chr4:9598411-9598077 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 106, 54 |
| Conread position: | 258-434 |
| Cow position: | chr4:10411503-10411327 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 271-447 |
| Cow position: | chr4:11796850-11796679 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 83-448 |
| Cow position: | chr5:4180267-4180636 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 87-448 |
| Cow position: | chr5:42731090-42730729 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 7, 44 |
| Conread position: | 89-447 |
| Cow position: | chr5:15094272-15093919 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 101-449 |
| Cow position: | chr5:43480981-43481321 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 144, 57 |
| Conread position: | 227-448 |
| Cow position: | chr5:23320829-23320602 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 82-447 |
| Cow position: | chr6:62239694-62239333 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 101-448 |
| Cow position: | chr6:54413590-54413928 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 231, 56 |
| Conread position: | 102-441 |
| Cow position: | chr6:33857550-33857898 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 241 |
| Conread position: | 107-447 |
| Cow position: | chr6:24798987-24798646 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 107-448 |
| Cow position: | chr6:10702941-10702599 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 113-447 |
| Cow position: | chr6:17713506-17713169 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 271-448 |
| Cow position: | chr6:7297744-7297913 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 79-447 |
| Cow position: | chr7:6136080-6136442 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 103-448 |
| Cow position: | chr7:67521029-67521376 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 104-385 |
| Cow position: | chr7:47120403-47120124 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 298-448 |
| Cow position: | chr7:35096077-35095924 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 78-448 |
| Cow position: | chr8:47134532-47134159 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 101-442 |
| Cow position: | chr8:23054115-23053770 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 162-448 |
| Cow position: | chr8:50416003-50416284 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 290-448 |
| Cow position: | chr8:58626975-58627127 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 83-448 |
| Cow position: | chr9:11673301-11672958 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 152, 85 |
| Conread position: | 106-449 |
| Cow position: | chr9:56245874-56245529 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 290-444 |
| Cow position: | chr9:51538775-51538926 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 87-448 |
| Cow position: | chrX:38168451-38168799 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 87-448 |
| Cow position: | chrX:43434504-43434857 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 271-447 |
| Cow position: | chrX:26609518-26609691 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 79, 59 |