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Cow genome map

           
Conread name:
           
Emb1-C0005218_I18
        

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:67287669-67287986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 58
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:48246681-48247050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr1:3385176-3384812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:58882934-58882557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr1:74285941-74285553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr1:6195083-6195530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr1:49973339-49972636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr1:70419536-70418851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr1:5502815-5503495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr1:26518037-26517358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr1:72186033-72185349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-697
               

               
Cow position:
               
chr1:99019163-99018458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 52
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr1:25550810-25551532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr1:72081615-72082325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr1:1460346-1460047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr1:58336689-58336914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-580
               

               
Cow position:
               
chr1:63502680-63503245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
4-644
               

               
Cow position:
               
chr1:24443479-24442863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
4-669
               

               
Cow position:
               
chr1:62805329-62804653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr1:30534166-30533456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr1:42737309-42737998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr1:43570560-43570212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
78-699
               

               
Cow position:
               
chr1:65387235-65387880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
103-699
               

               
Cow position:
               
chr1:22619698-22619103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
333-676
               

               
Cow position:
               
chr1:51965450-51965804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
408-699
               

               
Cow position:
               
chr1:76620204-76619911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr10:8290850-8291155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr10:14334977-14334281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr10:39040436-39039716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-556
               

               
Cow position:
               
chr10:16926409-16926968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 56
               

               
Conread position:
               
4-648
               

               
Cow position:
               
chr10:40151371-40150743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
4-671
               

               
Cow position:
               
chr10:11821623-11822299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chr10:1378381-1379049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-685
               

               
Cow position:
               
chr10:57556465-57555773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
16-182
               

               
Cow position:
               
chr10:29101707-29101552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
299-674
               

               
Cow position:
               
chr10:28946643-28947024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
413-699
               

               
Cow position:
               
chr10:46192430-46192731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
67, 110
               

               
Conread position:
               
452-699
               

               
Cow position:
               
chr10:53485901-53485644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr11:62803187-62803312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr11:30188351-30188587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr11:10216834-10216480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr11:43514123-43513464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr11:26124417-26123734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr11:58134903-58135587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr11:53431549-53430807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr11:19101986-19101264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr11:24393825-24394544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr11:28391153-28391322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
112, 58
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr11:21902583-21902295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
253, 61
               

               
Conread position:
               
4-388
               

               
Cow position:
               
chr11:77254215-77253852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 25
               

               
Conread position:
               
4-648
               

               
Cow position:
               
chr11:47759771-47759117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr11:17546675-17547387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr11:19063560-19062847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
6-675
               

               
Cow position:
               
chr11:29668093-29667414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
207-699
               

               
Cow position:
               
chr11:23880735-23881257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
482-699
               

               
Cow position:
               
chr11:44231461-44231695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr12:27855168-27854494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr12:42858739-42858065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr12:17979533-17980191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 24
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr12:32678147-32677478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 25
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr13:23002729-23002528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr13:13900446-13901127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr13:34041756-34041074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr13:31611729-31611014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr13:34324979-34324490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr13:21839619-21838910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr13:34049319-34050024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
5-391
               

               
Cow position:
               
chr13:60700085-60699707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
110, 63
               

               
Conread position:
               
131-699
               

               
Cow position:
               
chr13:13325619-13326224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 176
               

               
Conread position:
               
360-699
               

               
Cow position:
               
chr13:32924195-32923839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
388-699
               

               
Cow position:
               
chr13:33335329-33335018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
165, 106
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr14:33237479-33237834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr14:5529520-5530193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr14:19327817-19327127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr14:48253859-48253146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr14:45678873-45678722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr14:38531003-38530618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
109, 50
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr14:11561576-11561181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
4-581
               

               
Cow position:
               
chr14:9100264-9099694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 56
               

               
Conread position:
               
4-669
               

               
Cow position:
               
chr14:13274058-13274732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 56
               

               
Conread position:
               
5-675
               

               
Cow position:
               
chr14:9514832-9514159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
72-699
               

               
Cow position:
               
chr14:22030930-22030277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
191-699
               

               
Cow position:
               
chr14:45678444-45677915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
303-627
               

               
Cow position:
               
chr14:13462267-13462607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr15:53136766-53136506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr15:44070382-44070744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr15:2017023-2017403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
1-646
               

               
Cow position:
               
chr15:24295552-24296194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr15:15346660-15345938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr15:14636018-14636252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 55
               

               
Conread position:
               
4-644
               

               
Cow position:
               
chr15:7965490-7964844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
6-632
               

               
Cow position:
               
chr15:6079213-6079834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 51
               

               
Conread position:
               
10-644
               

               
Cow position:
               
chr15:4822942-4823558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
17-267
               

               
Cow position:
               
chr15:20356451-20356208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
68-699
               

               
Cow position:
               
chr15:8099981-8100631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
100-699
               

               
Cow position:
               
chr15:1764863-1765488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr16:15493614-15494002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr16:25171460-25172003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr16:15476952-15477627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr16:1567341-1566663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr16:8815995-8815315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr16:15185183-15185870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr16:5484842-5485554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr16:23535780-23535073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr16:25441738-25442457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr16:25258060-25258300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
4-697
               

               
Cow position:
               
chr16:31591805-31591093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
5-676
               

               
Cow position:
               
chr16:14665695-14665023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
405-675
               

               
Cow position:
               
chr16:51038594-51038864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
455-699
               

               
Cow position:
               
chr16:41571962-41572217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr17:19268146-19267464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr17:6260540-6261226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr17:6069237-6069945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr17:11087039-11086325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
4-698
               

               
Cow position:
               
chr17:19020258-19020960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr17:20099791-20099074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr17:24029318-24028602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
16-391
               

               
Cow position:
               
chr17:13990652-13990288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr18:25351648-25351841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr18:27837418-27836757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr18:23798541-23799223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr18:52651804-52652487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr18:14131285-14132001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr18:14416877-14417577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr18:16089033-16089730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr18:27988083-27988796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr18:32653112-32653454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chr18:16175721-16175044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
209-699
               

               
Cow position:
               
chr18:25352347-25352870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 168
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr19:33874322-33875026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr19:1588314-1588037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
72-699
               

               
Cow position:
               
chr19:28580704-28580060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
258-646
               

               
Cow position:
               
chr19:1489854-1489448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr2:65938115-65937905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr2:24147203-24147758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr2:16900590-16901282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr2:47811183-47811873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr2:10185887-10185170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr2:11158781-11158063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-563
               

               
Cow position:
               
chr2:74857562-74858122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
4-631
               

               
Cow position:
               
chr2:53330102-53330740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr2:20919806-20919536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr2:45919217-45918830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 130
               

               
Conread position:
               
127-699
               

               
Cow position:
               
chr2:41180586-41181171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
156-676
               

               
Cow position:
               
chr2:45916354-45915818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 179
               

               
Conread position:
               
416-665
               

               
Cow position:
               
chr2:72548133-72547878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 138
               

               
Conread position:
               
1-648
               

               
Cow position:
               
chr20:28564734-28564083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr20:15292858-15293521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr20:23468807-23468127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr20:5535790-5536520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr20:25849972-25849253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr20:28161675-28162401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr20:13433741-13433429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
5-597
               

               
Cow position:
               
chr20:32349130-32349723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
70-699
               

               
Cow position:
               
chr20:15066393-15067028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr21:2882768-2882324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr21:35144727-35145435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr21:13313732-13314005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
16-238
               

               
Cow position:
               
chr21:21222983-21222769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
88-699
               

               
Cow position:
               
chr21:27284499-27285148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
212-699
               

               
Cow position:
               
chr21:47646502-47647019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 148
               

               
Conread position:
               
269-699
               

               
Cow position:
               
chr21:4564699-4565149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
440-699
               

               
Cow position:
               
chr21:2880407-2880137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr22:36579792-36579464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 54
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr22:36590492-36590159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr22:15313154-15312765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-565
               

               
Cow position:
               
chr22:3273381-3272801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr22:34169136-34169821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr22:17327658-17326978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr22:44397243-44397911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr22:37292872-37292161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr22:44457855-44458210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
218, 56
               

               
Conread position:
               
4-644
               

               
Cow position:
               
chr22:522593-521946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-644
               

               
Cow position:
               
chr22:18815580-18814918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 61
               

               
Conread position:
               
4-648
               

               
Cow position:
               
chr22:1281930-1281281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr22:6021463-6022169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr22:39468720-39468001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
78-699
               

               
Cow position:
               
chr22:6332575-6333226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr23:965698-965052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr23:20155421-20154745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr23:2758685-2759411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr23:4889481-4890199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr23:11077409-11077077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
16-238
               

               
Cow position:
               
chr23:26837430-26837642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
78-699
               

               
Cow position:
               
chr23:11779648-11780292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
78-699
               

               
Cow position:
               
chr23:15177937-15178576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
102-699
               

               
Cow position:
               
chr23:2794368-2793745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
265-666
               

               
Cow position:
               
chr23:7045125-7044716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 115
               

               
Conread position:
               
468-699
               

               
Cow position:
               
chr23:15218604-15218375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 56
               

               
Conread position:
               
550-699
               

               
Cow position:
               
chr23:26838170-26838330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr24:28210199-28210022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
1-538
               

               
Cow position:
               
chr24:22971974-22972516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr24:9544948-9545611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 52
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr24:4414648-4413944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr24:14302367-14302641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr24:6332808-6332427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr24:12129181-12128793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chr24:19834278-19834972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
36-301
               

               
Cow position:
               
chr24:6049458-6049727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
67-699
               

               
Cow position:
               
chr24:13189111-13189775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
93-676
               

               
Cow position:
               
chr24:17370995-17370429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
133, 22
               

               
Conread position:
               
171-699
               

               
Cow position:
               
chr24:17409522-17410058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
254-698
               

               
Cow position:
               
chr24:12163068-12163536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
459-646
               

               
Cow position:
               
chr24:17279039-17278849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
494-699
               

               
Cow position:
               
chr24:40468436-40468650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr25:22148384-22149069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr25:3377383-3376701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr25:13781878-13782612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr25:27525291-27524935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr25:27021737-27021031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr26:30588505-30587802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr26:6848581-6847871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
4-648
               

               
Cow position:
               
chr26:21825820-21825179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
5-671
               

               
Cow position:
               
chr26:19350647-19349978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
12-329
               

               
Cow position:
               
chr26:14507687-14507390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
301-699
               

               
Cow position:
               
chr26:34012826-34013236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr27:3234742-3234041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr27:15636548-15635861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr27:13898126-13898830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr27:27506949-27507255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 66
               

               
Conread position:
               
72-699
               

               
Cow position:
               
chr27:9992340-9991695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
405-698
               

               
Cow position:
               
chr27:25084785-25085070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr28:1814019-1813633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr28:33253148-33253817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr28:5566999-5567655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr28:5802878-5803551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr28:7002840-7003527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr28:32791531-32790867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-677
               

               
Cow position:
               
chr28:26425411-26424733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
1-697
               

               
Cow position:
               
chr28:8720102-8719397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr28:18519605-18518886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr28:783517-784219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr28:1167032-1166332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr28:13460818-13461533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
6-699
               

               
Cow position:
               
chr28:29820845-29821553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
459-699
               

               
Cow position:
               
chr28:12151639-12151887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
190, 86
               

               
Conread position:
               
528-699
               

               
Cow position:
               
chr28:1813552-1813371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr29:7430409-7429823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-674
               

               
Cow position:
               
chr29:19622474-19621785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-675
               

               
Cow position:
               
chr29:42803223-42803887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chr29:20251977-20252647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
5-591
               

               
Cow position:
               
chr29:9642948-9642384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
462-699
               

               
Cow position:
               
chr29:14210274-14210026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
528-699
               

               
Cow position:
               
chr29:16661350-16661521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr3:23213352-23213160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-646
               

               
Cow position:
               
chr3:59862097-59862747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr3:53516336-53516989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
1-666
               

               
Cow position:
               
chr3:64822821-64823504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr3:66620908-66621592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr3:21181976-21181287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr3:63002819-63002151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr3:19720948-19720253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr3:23289610-23288929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr3:78026695-78026003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-684
               

               
Cow position:
               
chr3:70887859-70888552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr3:2710144-2709426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr3:5884268-5884970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr3:49544485-49543769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
4-616
               

               
Cow position:
               
chr3:56339691-56339078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-620
               

               
Cow position:
               
chr3:12679115-12678486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-675
               

               
Cow position:
               
chr3:2907043-2906359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr3:24445351-24444658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 64
               

               
Conread position:
               
5-669
               

               
Cow position:
               
chr3:10240385-10241049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
5-698
               

               
Cow position:
               
chr3:72630804-72631503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
17-352
               

               
Cow position:
               
chr3:31420078-31420410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr4:22473877-22474526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-668
               

               
Cow position:
               
chr4:16360443-16361107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr4:36896904-36897589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-693
               

               
Cow position:
               
chr4:1367634-1366969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
1-697
               

               
Cow position:
               
chr4:12587864-12588571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
1-697
               

               
Cow position:
               
chr4:50975150-50975861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 338
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr4:1049733-1049018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr4:6489832-6489121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr4:10882078-10882793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr4:13493850-13494571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr4:43319111-43318391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr4:43881637-43882350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
3-389
               

               
Cow position:
               
chr4:33494124-33494498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 57
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr4:14775975-14776368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 67
               

               
Conread position:
               
4-668
               

               
Cow position:
               
chr4:60263627-60262955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr4:159692-160402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
5-676
               

               
Cow position:
               
chr4:67681727-67682405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
22-699
               

               
Cow position:
               
chr4:19252005-19252670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
67-645
               

               
Cow position:
               
chr4:529986-530581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 314
               

               
Conread position:
               
72-699
               

               
Cow position:
               
chr4:12240621-12239979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
443-698
               

               
Cow position:
               
chr4:52963147-52962899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
206, 101
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr5:4385869-4386515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-646
               

               
Cow position:
               
chr5:46737947-46737309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-648
               

               
Cow position:
               
chr5:3786546-3787211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr5:3503491-3502797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr5:48808112-48807422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr5:59282946-59283627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-698
               

               
Cow position:
               
chr5:55628618-55629334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr5:34697230-34697945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
4-593
               

               
Cow position:
               
chr5:28950235-28949655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr5:18664421-18665114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr5:46807941-46808651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
5-698
               

               
Cow position:
               
chr5:1341401-1340700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
78-699
               

               
Cow position:
               
chr5:49519254-49519896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
138-699
               

               
Cow position:
               
chr5:51309100-51308512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
158-699
               

               
Cow position:
               
chr5:7274625-7275182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr6:65842392-65843031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr6:8202950-8203628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr6:914398-915118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr6:47042434-47041722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr6:65881980-65882340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
135, 58
               

               
Conread position:
               
4-617
               

               
Cow position:
               
chr6:13316703-13316077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-675
               

               
Cow position:
               
chr6:27529234-27528563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chr6:52693787-52694475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 50
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr6:39910104-39910819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
26-676
               

               
Cow position:
               
chr6:15926794-15926125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
117-698
               

               
Cow position:
               
chr6:1535703-1535094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
126-646
               

               
Cow position:
               
chr6:69391629-69391105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
187, 131
               

               
Conread position:
               
453-699
               

               
Cow position:
               
chr6:16591199-16591447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr7:33405382-33405109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-645
               

               
Cow position:
               
chr7:29471317-29471977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr7:14138738-14138055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr7:34486774-34487489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
3-671
               

               
Cow position:
               
chr7:63950206-63949515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr7:15810597-15810329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
4-667
               

               
Cow position:
               
chr7:39554628-39553970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 174
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr7:14214506-14213800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
5-397
               

               
Cow position:
               
chr7:39792632-39793015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
12-486
               

               
Cow position:
               
chr7:30118664-30118188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
77-674
               

               
Cow position:
               
chr7:58994517-58995110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
438-699
               

               
Cow position:
               
chr7:39793168-39793432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
464-699
               

               
Cow position:
               
chr7:47974973-47974728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr8:19330758-19331319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-583
               

               
Cow position:
               
chr8:19189683-19190274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 178
               

               
Conread position:
               
1-648
               

               
Cow position:
               
chr8:60061429-60062093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr8:50930084-50929405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-674
               

               
Cow position:
               
chr8:5017225-5017911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr8:14927833-14927159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr8:33589421-33590108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr8:46051233-46051911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr8:47661274-47660596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr8:42484962-42485673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr8:59261873-59261182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
3-341
               

               
Cow position:
               
chr8:12801177-12801506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr8:8315412-8315069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chr8:51666774-51666085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
4-698
               

               
Cow position:
               
chr8:47068764-47068055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
5-583
               

               
Cow position:
               
chr8:17312073-17312665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
8-517
               

               
Cow position:
               
chr8:35212934-35213430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
10-671
               

               
Cow position:
               
chr8:42656915-42656264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 47
               

               
Conread position:
               
132-699
               

               
Cow position:
               
chr8:54017380-54016800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 8
               

               
Conread position:
               
408-699
               

               
Cow position:
               
chr8:6764836-6764527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
437-698
               

               
Cow position:
               
chr8:6726494-6726227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
209, 53
               

               
Conread position:
               
505-697
               

               
Cow position:
               
chr8:38576641-38576442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr9:42569600-42569807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr9:60277318-60276672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr9:6249997-6250679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr9:37970499-37969831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr9:47002890-47003555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chr9:37162116-37161399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr9:828435-828105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
111, 43
               

               
Conread position:
               
4-699
               

               
Cow position:
               
chr9:28678670-28679380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
5-676
               

               
Cow position:
               
chr9:54925253-54925917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
70-699
               

               
Cow position:
               
chr9:3727353-3727998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
438-699
               

               
Cow position:
               
chr9:2172090-2172355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
210, 56
               

               
Conread position:
               
1-645
               

               
Cow position:
               
chrX:13412529-13411881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-648
               

               
Cow position:
               
chrX:2482027-2481373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chrX:13182515-13181869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chrX:41888378-41887728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 64
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chrX:4753017-4752338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chrX:15126633-15125939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
1-699
               

               
Cow position:
               
chrX:26528581-26529286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
4-605
               

               
Cow position:
               
chrX:12315150-12314545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-644
               

               
Cow position:
               
chrX:22816455-22817090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-675
               

               
Cow position:
               
chrX:29286035-29286719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
4-676
               

               
Cow position:
               
chrX:26766604-26765912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 50
               

               
Conread position:
               
5-699
               

               
Cow position:
               
chrX:30171226-30170528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
72-698
               

               
Cow position:
               
chrX:38148254-38148915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
417-699
               

               
Cow position:
               
chrX:28521571-28521283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 63