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Cow genome map

           
Conread name:
           
End1-UMC-pd10en2-001-b01
        

               
Conread position:
               
3-210
               

               
Cow position:
               
chr10:37309388-37309594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr10:63849579-63849845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr10:25264770-25264994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr10:37489193-37488950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr10:7310689-7310967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr10:20202180-20201903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
208, 146
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr10:43262369-43262074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr10:49711606-49711881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
204, 111
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr10:32469441-32469667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr10:31004636-31004384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr10:22268955-22268686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
141, 107
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr10:41707652-41707386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr10:45309953-45309684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr10:38866463-38866740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr10:25631127-25631380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
14-281
               

               
Cow position:
               
chr10:3783701-3783974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 149
               

               
Conread position:
               
29-260
               

               
Cow position:
               
chr10:3238682-3238913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
32-260
               

               
Cow position:
               
chr10:49932442-49932217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr10:68824867-68824610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
33-281
               

               
Cow position:
               
chr10:12937540-12937782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
216, 42
               

               
Conread position:
               
59-286
               

               
Cow position:
               
chr10:43164539-43164307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 61
               

               
Conread position:
               
74-243
               

               
Cow position:
               
chr10:50505274-50505100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
74-286
               

               
Cow position:
               
chr10:47553672-47553456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 179
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr11:50556944-50556751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr11:10809361-10809082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr11:71302877-71303155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr11:62871269-62870988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 159
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:9715236-9714952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 24
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:35231725-35232000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr11:37438837-37439105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 96
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:85403700-85404081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 117
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr11:9151781-9151530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr11:72086342-72086617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
157, 59
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr11:85208234-85207950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
9-286
               

               
Cow position:
               
chr11:52740242-52739963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
202, 13
               

               
Conread position:
               
13-278
               

               
Cow position:
               
chr11:43845450-43845180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
194, 131
               

               
Conread position:
               
14-278
               

               
Cow position:
               
chr11:9167101-9166833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
197, 255
               

               
Conread position:
               
22-278
               

               
Cow position:
               
chr11:41322851-41322597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
185, 23
               

               
Conread position:
               
43-280
               

               
Cow position:
               
chr11:1414596-1414369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
149, 38
               

               
Conread position:
               
48-276
               

               
Cow position:
               
chr11:17866894-17867131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
162, 210
               

               
Conread position:
               
74-280
               

               
Cow position:
               
chr11:67435693-67435490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 82
               

               
Conread position:
               
4-153
               

               
Cow position:
               
chr12:18157216-18157363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 78
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr12:577259-577028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 76
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr12:23026740-23027027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
82, 119
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr12:13376526-13376248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr12:22266343-22266613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 122
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr12:21230101-21229826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
202, 260
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chr12:16537038-16536771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
32-242
               

               
Cow position:
               
chr12:30131051-30131263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
32-273
               

               
Cow position:
               
chr12:32238185-32237944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
168, 130
               

               
Conread position:
               
32-280
               

               
Cow position:
               
chr12:23944378-23944626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 87
               

               
Conread position:
               
33-263
               

               
Cow position:
               
chr12:34824342-34824118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
46-254
               

               
Cow position:
               
chr12:27080109-27079900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
49-286
               

               
Cow position:
               
chr12:38204336-38204575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
86-281
               

               
Cow position:
               
chr12:22253488-22253294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr13:24703423-24703139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 77
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr13:28157416-28157185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 113
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr13:21587521-21587786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
111, 158
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr13:30271074-30270803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr13:12272910-12273183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr13:2206618-2206337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr13:25883662-25883941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr13:36243966-36243689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
207, 14
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr13:38625181-38625462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr13:44426825-44426544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 104
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr13:41567199-41566949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr13:34094940-34094677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
10-280
               

               
Cow position:
               
chr13:41482335-41482064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 55
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chr13:34017121-34016846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
197, 107
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr13:39268476-39268757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
14-281
               

               
Cow position:
               
chr13:19141523-19141785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
14-286
               

               
Cow position:
               
chr13:28342027-28341750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 108
               

               
Conread position:
               
22-264
               

               
Cow position:
               
chr13:49285391-49285636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
34-286
               

               
Cow position:
               
chr13:38536308-38536060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
55-281
               

               
Cow position:
               
chr13:55897929-55897705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
91-286
               

               
Cow position:
               
chr13:21900709-21900518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr14:11755964-11756148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr14:16717794-16717591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr14:13986374-13986116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr14:7886039-7885759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr14:13544019-13544298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
8-251
               

               
Cow position:
               
chr14:41877573-41877815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
202, 12
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr14:26818550-26818826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
203, 259
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr14:41510709-41510973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr14:43181397-43181123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
202, 35
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr14:36173808-36174091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 260
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr14:45962295-45962013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 261
               

               
Conread position:
               
9-286
               

               
Cow position:
               
chr14:21046833-21046555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
202, 17
               

               
Conread position:
               
11-154
               

               
Cow position:
               
chr14:37431911-37431767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
13-193
               

               
Cow position:
               
chr14:13097946-13098126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
102, 107
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr14:13092672-13092944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
134, 158
               

               
Conread position:
               
15-241
               

               
Cow position:
               
chr14:46024974-46025203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
74, 151
               

               
Conread position:
               
15-286
               

               
Cow position:
               
chr14:36327945-36327671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 107
               

               
Conread position:
               
43-173
               

               
Cow position:
               
chr14:3211996-3212126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr15:263440-263629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr15:8953343-8953619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 160
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr15:42634222-42633940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
206, 121
               

               
Conread position:
               
10-272
               

               
Cow position:
               
chr15:22239236-22238977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
200, 132
               

               
Conread position:
               
10-278
               

               
Cow position:
               
chr15:16704435-16704704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
85, 93
               

               
Conread position:
               
13-280
               

               
Cow position:
               
chr15:41147605-41147877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 160
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr15:34955791-34956062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
196, 105
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr15:18757952-18757694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
35-239
               

               
Cow position:
               
chr15:26597539-26597329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
46-278
               

               
Cow position:
               
chr15:36299132-36298904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
55-286
               

               
Cow position:
               
chr15:34274435-34274668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 12
               

               
Conread position:
               
71-263
               

               
Cow position:
               
chr15:20440328-20440131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
75-281
               

               
Cow position:
               
chr15:29819875-29820062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
85-281
               

               
Cow position:
               
chr15:9132561-9132750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr16:20124386-20124662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 84
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr16:8804859-8805148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
110, 265
               

               
Conread position:
               
8-267
               

               
Cow position:
               
chr16:6153615-6153350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
106, 14
               

               
Conread position:
               
8-271
               

               
Cow position:
               
chr16:6385953-6386213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
202, 74
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr16:29738557-29738277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 112
               

               
Conread position:
               
16-196
               

               
Cow position:
               
chr16:22853482-22853664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
133, 115
               

               
Conread position:
               
20-286
               

               
Cow position:
               
chr16:635685-635416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
21-286
               

               
Cow position:
               
chr16:28302510-28302241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 248
               

               
Conread position:
               
21-286
               

               
Cow position:
               
chr16:52473436-52473176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
190, 7
               

               
Conread position:
               
32-281
               

               
Cow position:
               
chr16:30696028-30695780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
34-280
               

               
Cow position:
               
chr16:45801278-45801527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
36-240
               

               
Cow position:
               
chr16:46528526-46528323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
76, 138
               

               
Conread position:
               
39-278
               

               
Cow position:
               
chr16:15046156-15045921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr17:31050243-31049958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 119
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr17:14906240-14905963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
192, 215
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr17:17047981-17048211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr17:24631271-24631017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr17:22500445-22500733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 244
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr17:43443428-43443142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 116
               

               
Conread position:
               
8-159
               

               
Cow position:
               
chr17:27434696-27434849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 115
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr17:14260903-14260666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr17:40054313-40054583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
181, 195
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr17:22237619-22237894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
203, 74
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chr17:46196-45919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
13-240
               

               
Cow position:
               
chr17:18850547-18850775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
197, 30
               

               
Conread position:
               
15-241
               

               
Cow position:
               
chr17:41319508-41319277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
99, 108
               

               
Conread position:
               
22-174
               

               
Cow position:
               
chr17:18594310-18594459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
39-279
               

               
Cow position:
               
chr17:3730453-3730211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
170, 111
               

               
Conread position:
               
57-281
               

               
Cow position:
               
chr17:21217172-21216949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
154, 172
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr18:51246947-51247230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
112, 270
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr18:252261-252550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr18:14152475-14152756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr18:44024743-44025017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr18:53583976-53584164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
8-236
               

               
Cow position:
               
chr18:19338362-19338581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr18:14423554-14423798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr18:8388546-8388823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
13-280
               

               
Cow position:
               
chr18:53614873-53615134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr18:48301169-48300899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
14-273
               

               
Cow position:
               
chr18:51300555-51300813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr18:29621940-29622208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
38-260
               

               
Cow position:
               
chr18:19543237-19543012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
173, 213
               

               
Conread position:
               
86-281
               

               
Cow position:
               
chr18:21237057-21236857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
125, 184
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr19:35171604-35171323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 97
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr19:20648980-20648742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr19:36101455-36101181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
206, 94
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr19:9115413-9115135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
146, 66
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chr19:20952681-20952442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
203, 80
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr19:5633212-5632966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
148, 107
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr19:10116236-10116501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
171, 10
               

               
Conread position:
               
12-220
               

               
Cow position:
               
chr19:39937325-39937120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr19:41214236-41213959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 109
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr19:5768082-5768346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 246
               

               
Conread position:
               
38-286
               

               
Cow position:
               
chr19:30455897-30456150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 232
               

               
Conread position:
               
43-278
               

               
Cow position:
               
chr19:26758956-26759187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
44-286
               

               
Cow position:
               
chr19:15060733-15060492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
5, 81
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr2:7328664-7328861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr2:79243018-79242791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
206, 22
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr2:49307451-49307702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
199, 86
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr2:21475043-21474769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr2:1661185-1661455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
207, 79
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr2:5478343-5478071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr2:4946172-4945889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr2:83248922-83248638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 262
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr2:40374070-40373785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 264
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr2:55474511-55474245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr2:37602771-37602506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
203, 86
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr2:54054954-54055240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr2:54425393-54425112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 69
               

               
Conread position:
               
13-210
               

               
Cow position:
               
chr2:72664912-72665116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
14-256
               

               
Cow position:
               
chr2:26887951-26888193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 80
               

               
Conread position:
               
15-193
               

               
Cow position:
               
chr2:25718223-25718400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
15-208
               

               
Cow position:
               
chr2:5909694-5909887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 101
               

               
Conread position:
               
22-278
               

               
Cow position:
               
chr2:43360446-43360189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
126, 97
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr2:3319996-3320262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr2:75792685-75792431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
55-281
               

               
Cow position:
               
chr2:21025419-21025641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
78-278
               

               
Cow position:
               
chr2:24153899-24154103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
100-286
               

               
Cow position:
               
chr2:80439567-80439752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 74
               

               
Conread position:
               
106-286
               

               
Cow position:
               
chr2:11625542-11625358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
105, 163
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr20:7608841-7609129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
112, 38
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr20:8478684-8478889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
60, 155
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr20:32704037-32703757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr20:8653404-8653690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 86
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr20:5381271-5380993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 118
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr20:11888751-11888481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr20:9333277-9333015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chr20:36869453-36869721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chr20:30188073-30188263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
15-286
               

               
Cow position:
               
chr20:22446464-22446193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 211
               

               
Conread position:
               
32-231
               

               
Cow position:
               
chr20:40360516-40360711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr20:4243305-4243550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 149
               

               
Conread position:
               
33-259
               

               
Cow position:
               
chr20:3217943-3217719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
40-275
               

               
Cow position:
               
chr20:2002793-2002549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 81
               

               
Conread position:
               
45-254
               

               
Cow position:
               
chr20:2473397-2473189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
82-236
               

               
Cow position:
               
chr20:30145049-30145207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr20:35161261-35161460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr21:20182650-20182932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr21:44874298-44874014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
111, 39
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr21:21291124-21290894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
199, 72
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr21:1628903-1629180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
183, 110
               

               
Conread position:
               
15-251
               

               
Cow position:
               
chr21:25644814-25645052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
197, 168
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr21:30649793-30649531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 17
               

               
Conread position:
               
31-281
               

               
Cow position:
               
chr21:47971417-47971158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr21:10093198-10093449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
43-260
               

               
Cow position:
               
chr21:37613070-37613287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 73
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr22:36365068-36365353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
124, 129
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr22:12445248-12445464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
201, 83
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr22:31110611-31110867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 20
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr22:653495-653225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
203, 40
               

               
Conread position:
               
22-196
               

               
Cow position:
               
chr22:19147531-19147361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
39-250
               

               
Cow position:
               
chr22:33219412-33219628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
43-286
               

               
Cow position:
               
chr22:12594733-12594989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
153, 116
               

               
Conread position:
               
82-286
               

               
Cow position:
               
chr22:41512956-41513173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 196
               

               
Conread position:
               
83-287
               

               
Cow position:
               
chr22:18437809-18438012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr23:2291872-2292133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
112, 164
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr23:30547003-30546731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 93
               

               
Conread position:
               
14-281
               

               
Cow position:
               
chr23:35281326-35281054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 76
               

               
Conread position:
               
14-289
               

               
Cow position:
               
chr23:18446256-18446523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr23:8984379-8984122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
193, 133
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chr23:13820548-13820293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
187, 29
               

               
Conread position:
               
82-276
               

               
Cow position:
               
chr23:31385509-31385307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr24:39049226-39048983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr24:37433233-37433041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr24:10879824-10880082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 53
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr24:40890675-40890952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
202, 148
               

               
Conread position:
               
8-266
               

               
Cow position:
               
chr24:33012354-33012611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 14
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr24:42386147-42385865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 261
               

               
Conread position:
               
12-278
               

               
Cow position:
               
chr24:6055228-6054964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
18-281
               

               
Cow position:
               
chr24:12762415-12762147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr24:29065144-29064902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
32-280
               

               
Cow position:
               
chr24:13796871-13796622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
180, 50
               

               
Conread position:
               
34-286
               

               
Cow position:
               
chr24:38186687-38186954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
80, 246
               

               
Conread position:
               
36-256
               

               
Cow position:
               
chr24:12063467-12063686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
129, 58
               

               
Conread position:
               
41-280
               

               
Cow position:
               
chr24:21555011-21555243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
87-254
               

               
Cow position:
               
chr24:18381927-18381756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
122, 68
               

               
Conread position:
               
91-286
               

               
Cow position:
               
chr24:40692262-40692465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 182
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr25:8015128-8015425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
51, 120
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr25:27977854-27977572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr25:13241579-13241858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr25:37231630-37231361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
105, 232
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr25:25731520-25731797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
22-277
               

               
Cow position:
               
chr25:16523066-16523327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
189, 88
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr25:20369093-20369359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 103
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr25:23895251-23895468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
41-245
               

               
Cow position:
               
chr25:33264492-33264701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
43-281
               

               
Cow position:
               
chr25:33459585-33459339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr26:15078426-15078710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr26:12259036-12258856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr26:26566939-26567237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr26:892312-892596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
51, 265
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr26:5699502-5699777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr26:17987395-17987115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 113
               

               
Conread position:
               
10-277
               

               
Cow position:
               
chr26:28645515-28645249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
32-281
               

               
Cow position:
               
chr26:12415276-12415028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 81
               

               
Conread position:
               
46-273
               

               
Cow position:
               
chr26:7022070-7022298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
165, 104
               

               
Conread position:
               
46-281
               

               
Cow position:
               
chr26:32680514-32680277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
165, 104
               

               
Conread position:
               
60-286
               

               
Cow position:
               
chr26:34606708-34606480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
150, 84
               

               
Conread position:
               
92-260
               

               
Cow position:
               
chr26:9637288-9637458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
119, 96
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr27:13919813-13920083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
144, 115
               

               
Conread position:
               
11-286
               

               
Cow position:
               
chr27:22586022-22586301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
14-286
               

               
Cow position:
               
chr27:29022184-29021914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
45-278
               

               
Cow position:
               
chr27:8067846-8067610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr28:7083727-7083507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
111, 78
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr28:15042218-15041981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
207, 18
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr28:11005199-11005484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr28:589862-589587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
206, 240
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr28:6262576-6262848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
9-260
               

               
Cow position:
               
chr28:7214684-7214425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
15-286
               

               
Cow position:
               
chr28:13975558-13975836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 44
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr28:29753635-29753380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr28:30238925-30238653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr29:12575325-12575612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
190, 38
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr29:37042389-37042239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr29:92542-92830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
208, 266
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr29:21204257-21204514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
161, 39
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chr29:39433358-39433125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
187, 22
               

               
Conread position:
               
32-286
               

               
Cow position:
               
chr29:28784072-28784327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 90
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr29:43283869-43283579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
43-283
               

               
Cow position:
               
chr29:26458839-26458596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 60
               

               
Conread position:
               
71-277
               

               
Cow position:
               
chr29:15529146-15529354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 133
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr3:46084851-46085115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
210, 90
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr3:27689583-27689851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 105
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr3:21652107-21652382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
62, 66
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr3:58103707-58103930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr3:19111861-19111632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr3:23880057-23879784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
206, 17
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr3:43901119-43901391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
144, 86
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr3:54680727-54680447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr3:56699532-56699252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr3:65961003-65961281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 98
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr3:10891876-10892112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr3:30366844-30366581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
206, 254
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr3:37349037-37348764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr3:57660636-57660908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
207, 131
               

               
Conread position:
               
8-163
               

               
Cow position:
               
chr3:84964018-84964173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
106, 114
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr3:322748-322467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
139, 263
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr3:7354701-7354974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr3:62736560-62736288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr3:56963318-56963082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 13
               

               
Conread position:
               
32-286
               

               
Cow position:
               
chr3:48223924-48223669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
128, 217
               

               
Conread position:
               
33-286
               

               
Cow position:
               
chr3:23012349-23012605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
39-278
               

               
Cow position:
               
chr3:25997948-25997707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
172, 80
               

               
Conread position:
               
43-248
               

               
Cow position:
               
chr3:14235206-14234999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
82-280
               

               
Cow position:
               
chr3:71235716-71235530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr3:4811284-4811463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
102, 161
               

               
Conread position:
               
4-171
               

               
Cow position:
               
chr4:39222025-39222193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 119
               

               
Conread position:
               
4-184
               

               
Cow position:
               
chr4:43657800-43657980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr4:62334690-62334939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
142, 61
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr4:49906968-49907247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
8-146
               

               
Cow position:
               
chr4:20682076-20682212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr4:2599489-2599210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
9-195
               

               
Cow position:
               
chr4:44774441-44774628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
12-277
               

               
Cow position:
               
chr4:66327190-66327459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
102, 111
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr4:35000879-35000661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
23-282
               

               
Cow position:
               
chr4:59557335-59557060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 256
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr4:26625658-26625414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
36-286
               

               
Cow position:
               
chr4:29134764-29134524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
173, 39
               

               
Conread position:
               
65-288
               

               
Cow position:
               
chr4:35122913-35122688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr5:40708528-40708788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 117
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:61032177-61032376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr5:56961577-56961815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr5:49154436-49154179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chr5:49070783-49070530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr5:9954334-9954058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
106, 78
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr5:51069226-51069501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 184
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr5:15461850-15462134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 110
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr5:24240128-24240407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
206, 138
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr5:42233266-42232988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 24
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr5:51947622-51947830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr5:51942669-51942954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr5:52248738-52248458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
106, 199
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr5:39467918-39468189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
203, 124
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr5:4437412-4437687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr5:68485425-68485695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr5:12234722-12234996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
184, 47
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr5:48131428-48131690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
155, 169
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr5:76050336-76050078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
203, 14
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chr5:21946081-21946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
105, 113
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr5:74283697-74283475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 165
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr5:37715584-37715317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
33-281
               

               
Cow position:
               
chr5:28529271-28529024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
179, 75
               

               
Conread position:
               
33-281
               

               
Cow position:
               
chr5:67423998-67423762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
46-284
               

               
Cow position:
               
chr5:54169833-54170076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
62-281
               

               
Cow position:
               
chr5:36224060-36223839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr6:19243192-19243511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
146, 105
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr6:36234436-36234159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 93
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr6:15154268-15154544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
109, 97
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr6:38780061-38779777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr6:47526423-47526714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr6:54734487-54734763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
63, 121
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chr6:26748344-26748084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
10, 162
               

               
Conread position:
               
8-239
               

               
Cow position:
               
chr6:66511686-66511915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
203, 72
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr6:48670416-48670147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
14-221
               

               
Cow position:
               
chr6:52807565-52807773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
198, 146
               

               
Conread position:
               
23-215
               

               
Cow position:
               
chr6:28141250-28141442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
23-278
               

               
Cow position:
               
chr6:46264744-46264493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
28-193
               

               
Cow position:
               
chr6:4047086-4046919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 94
               

               
Conread position:
               
33-190
               

               
Cow position:
               
chr6:39988540-39988695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
34-277
               

               
Cow position:
               
chr6:46881304-46881535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
47-286
               

               
Cow position:
               
chr6:15329739-15329982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
74-280
               

               
Cow position:
               
chr6:41119827-41120028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
91-185
               

               
Cow position:
               
chr6:5111877-5111783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-260
               

               
Cow position:
               
chr6:26063308-26063139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr7:51642008-51642303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
115, 279
               

               
Conread position:
               
4-114
               

               
Cow position:
               
chr7:33041608-33041497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-148
               

               
Cow position:
               
chr7:41323945-41323801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr7:33451676-33451928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
110, 74
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr7:59086180-59086451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 54
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr7:67631219-67630941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 49
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr7:42505293-42505574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 29
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr7:65135235-65134950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 116
               

               
Conread position:
               
8-172
               

               
Cow position:
               
chr7:57055-57219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 113
               

               
Conread position:
               
8-188
               

               
Cow position:
               
chr7:5222270-5222448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
158, 52
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr7:5530983-5531259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
203, 246
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr7:55634836-55634567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
199, 109
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr7:61006188-61006469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
206, 168
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr7:55964658-55964914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
13-249
               

               
Cow position:
               
chr7:54294880-54295113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
198, 91
               

               
Conread position:
               
15-281
               

               
Cow position:
               
chr7:24534113-24534382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
138, 80
               

               
Conread position:
               
32-273
               

               
Cow position:
               
chr7:30716325-30716085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 76
               

               
Conread position:
               
34-281
               

               
Cow position:
               
chr7:31442660-31442903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
39-281
               

               
Cow position:
               
chr7:4152455-4152212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 79
               

               
Conread position:
               
39-281
               

               
Cow position:
               
chr7:31438155-31438395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 55
               

               
Conread position:
               
54-281
               

               
Cow position:
               
chr7:50658220-50657974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 123
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr8:39461055-39461334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
112, 131
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr8:36616328-36616045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 126
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr8:5473894-5474171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 154
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr8:19445274-19445560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 194
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr8:41678083-41678357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr8:45566863-45566626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr8:1640786-1641066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
202, 54
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr8:30346544-30346820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 37
               

               
Conread position:
               
33-281
               

               
Cow position:
               
chr8:54381293-54381052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
179, 98
               

               
Conread position:
               
33-281
               

               
Cow position:
               
chr8:55737643-55737396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr8:14343487-14343241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr9:5703662-5703902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr9:50230940-50230672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr9:56265162-56264889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr9:46270472-46270201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
171, 49
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr9:6358780-6358501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
170, 14
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr9:50062849-50062574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
161, 169
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr9:61519442-61519717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr9:48056265-48056526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chr9:40130985-40131278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr9:29851318-29851601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 268
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr9:27741377-27741644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr9:29372739-29373005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
13-260
               

               
Cow position:
               
chr9:23603228-23603478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr9:34726053-34726322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
198, 95
               

               
Conread position:
               
22-152
               

               
Cow position:
               
chr9:4982224-4982354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 98
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr9:26189769-26190029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 86
               

               
Conread position:
               
57-207
               

               
Cow position:
               
chr9:55315196-55315048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
75-273
               

               
Cow position:
               
chr9:7145710-7145510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
76-258
               

               
Cow position:
               
chr9:55890886-55891073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chrX:30685070-30684777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chrX:8455551-8455804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
208, 63
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chrX:17523232-17523054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chrX:23326806-23326543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chrX:10410092-10409805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
110, 197
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chrX:6026697-6026416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 142
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chrX:10823094-10822824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chrX:18153475-18153195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chrX:44491431-44491150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chrX:36085908-36086165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 92
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chrX:31933895-31933619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 34
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chrX:25449872-25450130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
23-286
               

               
Cow position:
               
chrX:24129327-24129588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
188, 49
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chrX:41113908-41114081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
52, 144
               

               
Conread position:
               
43-261
               

               
Cow position:
               
chrX:37416557-37416334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
88-260
               

               
Cow position:
               
chrX:21973022-21973194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 34