Cow genome map

Conread name: End1-UMC-pd10en2-002-e12

Conread position: 1-112
Cow position: chr10:27306105-27305994 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr10:42349206-42349316 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 1-107
Cow position: chr11:72347121-72347015 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-111
Cow position: chr11:36901444-36901336 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 1-112
Cow position: chr11:6604830-6604941 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 70

Conread position: 1-112
Cow position: chr11:41483369-41483259 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 1-112
Cow position: chr11:63678287-63678397 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 3-112
Cow position: chr11:9806526-9806415 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 13-104
Cow position: chr11:63664897-63664988 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-121
Cow position: chr13:52288755-52288632 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 1-96
Cow position: chr14:9228569-9228664 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 28, 38

Conread position: 1-112
Cow position: chr14:5363383-5363272 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr14:34207964-34208074 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 2-110
Cow position: chr15:1998865-1998758 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 3-112
Cow position: chr15:17289164-17289273 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 376-523
Cow position: chr15:6172962-6172809 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 39

Conread position: 1-112
Cow position: chr16:8786812-8786702 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 1-112
Cow position: chr16:26065558-26065670 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 1-112
Cow position: chr16:34131519-34131409 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 2-112
Cow position: chr16:33147684-33147792 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 1-107
Cow position: chr17:15483657-15483763 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-110
Cow position: chr17:1730337-1730228 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-110
Cow position: chr17:27302249-27302358 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr17:11072369-11072260 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-112
Cow position: chr17:24997267-24997378 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr17:25546141-25546252 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 26-112
Cow position: chr17:34053888-34053802 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr18:42986057-42986168 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-123
Cow position: chr18:7115153-7115273 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 4-112
Cow position: chr18:17015098-17015205 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 380-520
Cow position: chr18:7115265-7115398 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 389-521
Cow position: chr18:51386721-51386591 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 1-111
Cow position: chr19:10551972-10552084 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 1-112
Cow position: chr2:64175480-64175590 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 1-120
Cow position: chr2:28574547-28574428 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-121
Cow position: chr2:46215550-46215670 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-121
Cow position: chr2:34328792-34328912 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 1-111
Cow position: chr20:35652373-35652263 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 4-112
Cow position: chr20:23761006-23760899 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 1-111
Cow position: chr21:42475165-42475275 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr21:7074098-7074207 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 2-121
Cow position: chr21:12898713-12898595 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 4-120
Cow position: chr21:8851184-8851064 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 1-111
Cow position: chr22:31917530-31917423 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 378-526
Cow position: chr22:4680476-4680328 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 29

Conread position: 1-100
Cow position: chr23:18271965-18271867 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 1-111
Cow position: chr23:37098834-37098726 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 1-112
Cow position: chr23:3552433-3552544 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr23:13562383-13562494 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 98
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 4-121
Cow position: chr23:37977228-37977346 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 42, 97

Conread position: 1-110
Cow position: chr25:26243634-26243742 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-112
Cow position: chr25:7221942-7222054 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 1-112
Cow position: chr25:36035308-36035196 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-113
Cow position: chr25:21956224-21956335 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 3-121
Cow position: chr25:8544106-8543987 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 5-121
Cow position: chr25:11260302-11260187 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 1-112
Cow position: chr26:20868157-20868268 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-113
Cow position: chr26:16049740-16049629 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 1-112
Cow position: chr27:15106111-15106222 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr28:34761408-34761307 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr28:5414718-5414607 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 370-523
Cow position: chr28:4132816-4132668 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-112
Cow position: chr3:52026685-52026576 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 3-112
Cow position: chr3:37256111-37256002 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr4:63237996-63237885 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 366-526
Cow position: chr4:12263513-12263351 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 32

Conread position: 1-112
Cow position: chr5:24887016-24886904 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 1-112
Cow position: chr5:24893453-24893342 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 35

Conread position: 1-121
Cow position: chr5:17044109-17044228 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 1-110
Cow position: chr6:60062986-60062878 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 1-112
Cow position: chr6:18788975-18788862 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 1-112
Cow position: chr6:22602126-22602015 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr6:61642858-61642747 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 6-102
Cow position: chr6:8814229-8814326 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 10-112
Cow position: chr6:44819976-44820080 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 91
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 1-112
Cow position: chr7:43870671-43870781 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 2-113
Cow position: chr7:43569066-43568955 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 376-522
Cow position: chr7:61786746-61786894 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 79, 44

Conread position: 1-112
Cow position: chr8:13847278-13847389 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chr8:35511652-35511762 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 1-112
Cow position: chr8:51241459-51241570 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr9:36396852-36396750 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 89

Conread position: 1-102
Cow position: chr9:56294191-56294090 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-123
Cow position: chr9:5147430-5147552 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 1-107
Cow position: chrX:38741037-38741143 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-110
Cow position: chrX:29372316-29372425 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-111
Cow position: chrX:34635624-34635514 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chrX:27529507-27529618 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-121
Cow position: chrX:40315761-40315882 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 69

Conread position: 2-96
Cow position: chrX:23320418-23320512 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0