Cow genome map
| Conread name: | End1-UMC-pd10en3-015-a11 |
| Conread position: | 1-387 |
| Cow position: | chr1:33389663-33389251 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 88 |
| Conread position: | 5-388 |
| Cow position: | chr1:31329864-31330254 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 67, 197 |
| Conread position: | 16-388 |
| Cow position: | chr1:98864214-98864604 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 275 |
| Conread position: | 30-388 |
| Cow position: | chr1:44100860-44101238 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 140-388 |
| Cow position: | chr1:38396962-38396724 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 1-347 |
| Cow position: | chr10:39879805-39880153 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 1-388 |
| Cow position: | chr10:24977209-24977595 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 1-388 |
| Cow position: | chr10:64302211-64302602 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 106 |
| Conread position: | 8-365 |
| Cow position: | chr10:11821316-11820951 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 75-381 |
| Cow position: | chr10:6259932-6260247 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 2-342 |
| Cow position: | chr11:18072824-18073193 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 69-382 |
| Cow position: | chr11:13066559-13066878 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 195 |
| Conread position: | 99-388 |
| Cow position: | chr11:36713022-36713321 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 135-387 |
| Cow position: | chr11:36762525-36762256 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 134 |
| Conread position: | 203-381 |
| Cow position: | chr12:17977121-17976942 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 1-381 |
| Cow position: | chr13:22184975-22185365 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 3-388 |
| Cow position: | chr13:34048882-34048482 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 56 |
| Conread position: | 242-388 |
| Cow position: | chr13:21131712-21131566 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-344 |
| Cow position: | chr14:34043528-34043853 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 20 |
| Conread position: | 1-388 |
| Cow position: | chr14:33488088-33487677 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 175 |
| Conread position: | 83-387 |
| Cow position: | chr14:9515766-9516083 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-388 |
| Cow position: | chr15:20356761-20357163 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 159 |
| Conread position: | 4-388 |
| Cow position: | chr15:498893-498493 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 166-385 |
| Cow position: | chr16:29090693-29090919 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 118-388 |
| Cow position: | chr17:15384493-15384226 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 224, 80 |
| Conread position: | 199-388 |
| Cow position: | chr18:4884826-4885014 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 157 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 1-356 |
| Cow position: | chr2:45919542-45919907 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 1-374 |
| Cow position: | chr2:45967930-45968311 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 1-388 |
| Cow position: | chr2:63978330-63977927 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 80 |
| Conread position: | 27-351 |
| Cow position: | chr2:11692541-11692222 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 194, 37 |
| Conread position: | 104-387 |
| Cow position: | chr2:43959937-43959649 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 23 |
| Conread position: | 124-388 |
| Cow position: | chr2:77208951-77208671 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 9-388 |
| Cow position: | chr21:21518166-21517803 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 97, 122 |
| Conread position: | 104-388 |
| Cow position: | chr21:37293122-37292828 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 1-377 |
| Cow position: | chr22:36551977-36552352 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 1-379 |
| Cow position: | chr22:36580323-36580709 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 7-369 |
| Cow position: | chr22:8148000-8148356 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 108-388 |
| Cow position: | chr22:292083-292388 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 233 |
| Conread position: | 157-386 |
| Cow position: | chr22:36591117-36591355 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 1-366 |
| Cow position: | chr23:15877289-15877650 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 86, 36 |
| Conread position: | 1-388 |
| Cow position: | chr23:26837145-26836742 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 107 |
| Conread position: | 164-388 |
| Cow position: | chr24:14872586-14872818 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 3-388 |
| Cow position: | chr28:10229693-10230093 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 8-386 |
| Cow position: | chr28:5801520-5801114 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 95-388 |
| Cow position: | chr28:29436431-29436743 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 202 |
| Conread position: | 1-388 |
| Cow position: | chr29:16016285-16016664 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 88 |
| Conread position: | 3-388 |
| Cow position: | chr29:8062004-8062400 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 1-315 |
| Cow position: | chr3:42995268-42995603 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-388 |
| Cow position: | chr3:31415947-31415542 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 85 |
| Conread position: | 5-388 |
| Cow position: | chr3:21304391-21304771 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 70 |
| Conread position: | 25-388 |
| Cow position: | chr3:18728393-18728758 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 189-388 |
| Cow position: | chr3:64822185-64821984 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 1-386 |
| Cow position: | chr4:44925298-44925713 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 1-388 |
| Cow position: | chr4:1496172-1496565 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 293 |
| Conread position: | 1-388 |
| Cow position: | chr4:4177006-4176632 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 3-388 |
| Cow position: | chr4:968439-968823 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 165 |
| Conread position: | 43-388 |
| Cow position: | chr4:14550163-14549808 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 285 |
| Conread position: | 149-373 |
| Cow position: | chr4:27295671-27295909 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 264-388 |
| Cow position: | chr4:32622307-32622183 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-388 |
| Cow position: | chr5:41357781-41358171 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 33 |
| Conread position: | 1-388 |
| Cow position: | chr6:31637105-31637488 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 26 |
| Conread position: | 17-386 |
| Cow position: | chr6:8752099-8752479 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 139-387 |
| Cow position: | chr6:35434448-35434194 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 206-387 |
| Cow position: | chr6:10631203-10631023 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 1-387 |
| Cow position: | chr7:67813100-67812700 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 1-388 |
| Cow position: | chr7:26852209-26851821 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 1-388 |
| Cow position: | chr7:30303121-30302753 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 80 |
| Conread position: | 3-388 |
| Cow position: | chr7:41875731-41876122 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 54 |
| Conread position: | 58-388 |
| Cow position: | chr7:19048065-19048406 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 160, 48 |
| Conread position: | 198-388 |
| Cow position: | chr7:23836875-23836681 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-388 |
| Cow position: | chr8:24874387-24874796 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-388 |
| Cow position: | chr8:38577654-38578043 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 185-388 |
| Cow position: | chr8:16085269-16085060 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-388 |
| Cow position: | chr9:7013089-7012700 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 93 |
| Conread position: | 1-388 |
| Cow position: | chr9:59511765-59511360 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 80 |
| Conread position: | 13-387 |
| Cow position: | chr9:3393244-3393628 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 130 |
| Conread position: | 166-382 |
| Cow position: | chr9:3726890-3726664 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 200-388 |
| Cow position: | chr9:64159696-64159503 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-380 |
| Cow position: | chrX:6250143-6250543 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 87 |
| Conread position: | 1-382 |
| Cow position: | chrX:13417141-13417523 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 24 |
| Conread position: | 1-386 |
| Cow position: | chrX:26427357-26427764 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-388 |
| Cow position: | chrX:10417011-10417425 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 56 |
| Conread position: | 74-388 |
| Cow position: | chrX:41888743-41889070 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 94-388 |
| Cow position: | chrX:29815049-29814736 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 139-367 |
| Cow position: | chrX:30132272-30132505 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 19 |