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Cow genome map

           
Conread name:
           
End3-UMC-pd6end2-011-b05
        

               
Conread position:
               
2-336
               

               
Cow position:
               
chr10:60366615-60366941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr10:2420462-2420137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr10:57460686-57461045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
116, 77
               

               
Conread position:
               
9-337
               

               
Cow position:
               
chr10:17922749-17923066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
110, 41
               

               
Conread position:
               
93-377
               

               
Cow position:
               
chr10:18024023-18024312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
31, 193
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr10:15499239-15498956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
242-406
               

               
Cow position:
               
chr10:65131091-65130925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr11:55116268-55115919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr11:84531946-84531582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
195, 50
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr11:33363728-33364057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr11:44131710-44131994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 39
               

               
Conread position:
               
97-388
               

               
Cow position:
               
chr11:48231915-48232196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
100-381
               

               
Cow position:
               
chr11:81162981-81162704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
127-376
               

               
Cow position:
               
chr11:67600246-67600493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
27-373
               

               
Cow position:
               
chr12:7972760-7973112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
50-388
               

               
Cow position:
               
chr12:31217846-31218180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
100-375
               

               
Cow position:
               
chr12:12939486-12939225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr13:30280393-30280702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 44
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr13:21986711-21987034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr13:9693131-9692808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 48
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr13:5717283-5716886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
90-406
               

               
Cow position:
               
chr13:7297454-7297138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
91-398
               

               
Cow position:
               
chr13:53070009-53069697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
108-406
               

               
Cow position:
               
chr13:9570502-9570205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
124-406
               

               
Cow position:
               
chr13:14063032-14063304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr14:31759304-31758973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr14:43693034-43693355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
193, 40
               

               
Conread position:
               
97-386
               

               
Cow position:
               
chr14:44878208-44878494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
225-406
               

               
Cow position:
               
chr14:43032264-43032086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr15:39445957-39445614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr15:47340867-47340490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 49
               

               
Conread position:
               
10-278
               

               
Cow position:
               
chr15:15157499-15157239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
48-260
               

               
Cow position:
               
chr15:23561357-23561561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
91-386
               

               
Cow position:
               
chr15:19725107-19725402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 65
               

               
Conread position:
               
110-376
               

               
Cow position:
               
chr15:17438148-17438418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
124-386
               

               
Cow position:
               
chr15:38732037-38732295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
128-380
               

               
Cow position:
               
chr15:38883773-38883522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr16:25893439-25893781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr16:51997383-51996999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 41
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr16:13791936-13792232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr16:53612684-53613042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr16:22825241-22824882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
100-377
               

               
Cow position:
               
chr16:11619223-11619495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
100-406
               

               
Cow position:
               
chr16:3820656-3820961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr17:18070205-18070426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr17:28359272-28359639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 50
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr18:37334486-37334824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
194, 49
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr18:38090218-38089864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr18:42060408-42060766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
44-337
               

               
Cow position:
               
chr18:20196094-20195810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
91-380
               

               
Cow position:
               
chr18:36477591-36477888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chr18:11680148-11680449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr19:12614123-12613814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr19:15245712-15245386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr19:14103836-14104179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr19:28370232-28370548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
113, 48
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr19:42274498-42274101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 46
               

               
Conread position:
               
90-403
               

               
Cow position:
               
chr19:9704389-9704083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
100-403
               

               
Cow position:
               
chr19:37110471-37110184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr2:16415287-16415673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr2:68051585-68051203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr2:40773089-40773458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr2:37396549-37396928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr2:25216643-25217012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
4-403
               

               
Cow position:
               
chr2:58770295-58770675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
90-380
               

               
Cow position:
               
chr2:24036364-24036082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
107-369
               

               
Cow position:
               
chr2:70752269-70752534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
109-397
               

               
Cow position:
               
chr2:54726871-54726578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
117-406
               

               
Cow position:
               
chr2:50561765-50562070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 294
               

               
Conread position:
               
135-388
               

               
Cow position:
               
chr2:3544831-3544583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
176-376
               

               
Cow position:
               
chr2:26340264-26340063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr20:7933396-7933656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
97-376
               

               
Cow position:
               
chr20:7442621-7442337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr21:21027253-21027585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr21:15304753-15304416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr21:22856647-22856989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
194, 79
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:10045699-10046091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr21:25472971-25473333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
90-380
               

               
Cow position:
               
chr21:21000509-21000218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
90-406
               

               
Cow position:
               
chr21:38908084-38908397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
96-380
               

               
Cow position:
               
chr21:28944873-28944574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
96-390
               

               
Cow position:
               
chr21:27613817-27614101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 137
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr21:4595084-4594772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr21:1058354-1058639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr22:7280381-7280706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr22:11489966-11490285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
103-383
               

               
Cow position:
               
chr22:533925-534201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
138-380
               

               
Cow position:
               
chr22:23854467-23854703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr23:29946274-29945942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr23:7372724-7373098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
97-401
               

               
Cow position:
               
chr23:30244182-30244480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr23:2436829-2436584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr24:31767623-31767923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr24:12264317-12263938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr24:18391221-18390890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 49
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr24:27564244-27563948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
110-380
               

               
Cow position:
               
chr24:40184051-40184323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr25:38606928-38606592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr25:24636736-24636404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 41
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr25:12081949-12081587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
7-375
               

               
Cow position:
               
chr25:24302853-24302493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
89-398
               

               
Cow position:
               
chr25:27535460-27535151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
96-406
               

               
Cow position:
               
chr25:27510776-27510470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
127-386
               

               
Cow position:
               
chr25:20101573-20101825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr26:23807120-23806794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr26:12125912-12125542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr26:16508729-16508900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr26:10491188-10491509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 45
               

               
Conread position:
               
90-301
               

               
Cow position:
               
chr26:18691924-18692135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
127-406
               

               
Cow position:
               
chr26:14923990-14924277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
179-406
               

               
Cow position:
               
chr26:19763357-19763125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 209
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr27:5423831-5424160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 42
               

               
Conread position:
               
100-377
               

               
Cow position:
               
chr27:8048222-8048496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
156-376
               

               
Cow position:
               
chr27:6641671-6641448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 178
               

               
Conread position:
               
175-406
               

               
Cow position:
               
chr27:7648143-7648373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
195-397
               

               
Cow position:
               
chr28:22081134-22081336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 188
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr29:17965443-17965674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr29:27310050-27309758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
193, 49
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr29:8136851-8136523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr29:43327430-43327770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr29:16319708-16319352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
196, 34
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr29:23980362-23980730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:38247350-38246965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 49
               

               
Conread position:
               
97-398
               

               
Cow position:
               
chr29:2624025-2623728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
102, 73
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chr29:43517249-43516921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:12076326-12076000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr3:15557332-15557683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:15747053-15746714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:26474533-26474884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr3:33469116-33468760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr3:1483569-1483935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 49
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr3:53414561-53414925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr3:73936651-73936307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
91-375
               

               
Cow position:
               
chr3:49160755-49160478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
97-376
               

               
Cow position:
               
chr3:9641014-9641285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
97-390
               

               
Cow position:
               
chr3:32869579-32869876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chr3:73467048-73467357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
103-380
               

               
Cow position:
               
chr3:56101881-56102157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
128-380
               

               
Cow position:
               
chr3:17895306-17895559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
136-380
               

               
Cow position:
               
chr3:22716797-22716558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr4:65208576-65208323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr4:33645150-33644824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr4:61625233-61624844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr4:1352643-1352317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
118, 45
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr4:27548840-27548514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 42
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr4:36755199-36755484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr4:55522784-55523063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chr4:56530449-56530132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
101-377
               

               
Cow position:
               
chr4:4127123-4127389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
102-375
               

               
Cow position:
               
chr4:3252110-3251846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
103-377
               

               
Cow position:
               
chr4:46456581-46456311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
103-380
               

               
Cow position:
               
chr4:27287664-27287385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
108-380
               

               
Cow position:
               
chr4:51122482-51122762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
124-375
               

               
Cow position:
               
chr4:45115124-45114870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:57941457-57941116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr5:23683657-23683298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr5:2310150-2309786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
2-286
               

               
Cow position:
               
chr5:61230991-61230705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr5:18127065-18127453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
97-396
               

               
Cow position:
               
chr5:34300408-34300702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chr5:28229641-28229944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr6:25178732-25178518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr6:37644011-37644287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
118, 49
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr6:3118794-3118427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr6:51191222-51191597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
153, 48
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr6:27365762-27366088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
45-379
               

               
Cow position:
               
chr6:2582248-2582570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
71, 6
               

               
Conread position:
               
96-380
               

               
Cow position:
               
chr6:47640972-47640689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
100-380
               

               
Cow position:
               
chr6:45065499-45065224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
102-383
               

               
Cow position:
               
chr6:66550242-66550525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
158-379
               

               
Cow position:
               
chr6:49685150-49685366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr7:48337349-48337035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
194, 39
               

               
Conread position:
               
97-391
               

               
Cow position:
               
chr7:63022643-63022933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chr7:58867111-58867413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
100-406
               

               
Cow position:
               
chr7:41444854-41445165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
122-406
               

               
Cow position:
               
chr7:25867985-25867702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
244-406
               

               
Cow position:
               
chr7:52131130-52130965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 106
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr8:8481507-8481186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr8:32827960-32828282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr8:27368508-27368793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 43
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr8:53943437-53943107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
253, 48
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr8:35988895-35989243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr8:13559138-13559494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
92-381
               

               
Cow position:
               
chr8:34397729-34398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
94-386
               

               
Cow position:
               
chr8:4784861-4784569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr8:20080588-20080317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
119-387
               

               
Cow position:
               
chr8:15871289-15871022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr9:25617547-25617256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:3722247-3722557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr9:50776213-50776424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chr9:41782558-41782200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
90-406
               

               
Cow position:
               
chr9:32688217-32688529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
97-396
               

               
Cow position:
               
chr9:5400303-5400006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
100-375
               

               
Cow position:
               
chr9:8338587-8338316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
102-406
               

               
Cow position:
               
chr9:25547207-25546901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
128-373
               

               
Cow position:
               
chr9:27462976-27463214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chrX:34840340-34840018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:2701406-2701083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 50
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:17200218-17200555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:33614828-33615157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
113, 51
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chrX:17743500-17743827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 79
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chrX:13057989-13058353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chrX:6835829-6835468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
10-403
               

               
Cow position:
               
chrX:17122599-17122217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 40
               

               
Conread position:
               
96-384
               

               
Cow position:
               
chrX:42757165-42757456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
97-386
               

               
Cow position:
               
chrX:47243789-47243501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
97-406
               

               
Cow position:
               
chrX:7424943-7425253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
99-377
               

               
Cow position:
               
chrX:34543282-34543555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
159-380
               

               
Cow position:
               
chrX:904884-905113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
170-386
               

               
Cow position:
               
chrX:6277872-6277654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 0