Cow genome map
| Conread name: | Liv1-LVRM10018D01 |
| Conread position: | 38-328 |
| Cow position: | chr10:24544684-24544391 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 39-445 |
| Cow position: | chr10:28051358-28051750 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 59-335 |
| Cow position: | chr10:4557781-4558064 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 72-378 |
| Cow position: | chr10:58114924-58114634 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 118-651 |
| Cow position: | chr10:30438571-30439078 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 7 |
| Conread position: | 54-312 |
| Cow position: | chr11:65234587-65234834 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 202, 109 |
| Conread position: | 161-690 |
| Cow position: | chr11:84953842-84953320 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 352 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 520-683 |
| Cow position: | chr11:55080961-55080798 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-633 |
| Cow position: | chr13:37484127-37483739 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 129, 19 |
| Conread position: | 54-631 |
| Cow position: | chr14:1734378-1734920 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 382 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 54-686 |
| Cow position: | chr14:19058188-19057563 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 426 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 58-327 |
| Cow position: | chr14:5052102-5051841 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 240-645 |
| Cow position: | chr14:45848879-45848478 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 473-690 |
| Cow position: | chr14:42259936-42259710 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 54-535 |
| Cow position: | chr15:32981920-32981452 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 62-438 |
| Cow position: | chr15:36909426-36909786 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 122-610 |
| Cow position: | chr15:13134735-13135210 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 228-686 |
| Cow position: | chr15:41918937-41918488 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 136-640 |
| Cow position: | chr16:19395591-19396101 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 232-551 |
| Cow position: | chr16:21446819-21446509 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 267-616 |
| Cow position: | chr16:27706407-27706737 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 161, 32 |
| Conread position: | 57-436 |
| Cow position: | chr17:20007239-20006872 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 61-571 |
| Cow position: | chr17:29274982-29274487 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 98-566 |
| Cow position: | chr17:35254577-35255027 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 13 |
| Conread position: | 136-641 |
| Cow position: | chr17:32292762-32293256 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 53-513 |
| Cow position: | chr18:51252203-51251757 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 54-328 |
| Cow position: | chr18:38625518-38625248 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 108-587 |
| Cow position: | chr18:40077932-40078387 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 218-628 |
| Cow position: | chr18:55000911-55001331 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 84 |
| Conread position: | 330-645 |
| Cow position: | chr18:28530376-28530692 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 57-328 |
| Cow position: | chr19:46298904-46298638 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 331-686 |
| Cow position: | chr19:5862671-5863029 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 9-524 |
| Cow position: | chr2:14898900-14898378 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 54-648 |
| Cow position: | chr2:49190914-49190345 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 168-682 |
| Cow position: | chr2:60386911-60386406 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 345 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 90, 10 |
| Conread position: | 228-628 |
| Cow position: | chr2:70783815-70784195 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 353-524 |
| Cow position: | chr2:71590999-71591167 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 97-426 |
| Cow position: | chr20:26494855-26494543 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 166, 18 |
| Conread position: | 98-533 |
| Cow position: | chr20:28607452-28607875 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 54-628 |
| Cow position: | chr21:4860071-4860628 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 120 |
| Conread position: | 87-645 |
| Cow position: | chr21:13431934-13432488 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 369 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 177, 83 |
| Conread position: | 149-602 |
| Cow position: | chr21:21033605-21033144 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 9-634 |
| Cow position: | chr22:37992274-37992895 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 54-642 |
| Cow position: | chr22:6060607-6061165 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 387 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 54-642 |
| Cow position: | chr22:14096846-14097414 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 72-528 |
| Cow position: | chr22:29893345-29892909 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 187, 53 |
| Conread position: | 240-602 |
| Cow position: | chr22:34726508-34726165 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 330-587 |
| Cow position: | chr22:16818418-16818155 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 59-645 |
| Cow position: | chr23:1952760-1952194 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 264-638 |
| Cow position: | chr23:9610144-9609790 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 164, 47 |
| Conread position: | 38-414 |
| Cow position: | chr24:5891452-5891813 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 72-553 |
| Cow position: | chr24:24799188-24799653 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 97-617 |
| Cow position: | chr24:5539764-5539261 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 355-693 |
| Cow position: | chr24:13783820-13784157 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 240-625 |
| Cow position: | chr26:24738682-24738308 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 261-599 |
| Cow position: | chr26:18692267-18691936 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 67-686 |
| Cow position: | chr27:1844705-1845292 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 405 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 192, 13 |
| Conread position: | 94-438 |
| Cow position: | chr27:28895895-28895568 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 168, 13 |
| Conread position: | 9-639 |
| Cow position: | chr28:5433675-5434273 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 403 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 54-400 |
| Cow position: | chr28:27885399-27885734 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 203, 73 |
| Conread position: | 9-482 |
| Cow position: | chr29:29000637-29001099 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 54-427 |
| Cow position: | chr29:1005105-1004741 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 58-569 |
| Cow position: | chr3:18596011-18595523 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 60-645 |
| Cow position: | chr3:24796336-24795784 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 231-436 |
| Cow position: | chr3:49435464-49435657 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 331-600 |
| Cow position: | chr3:15157672-15157416 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 330-633 |
| Cow position: | chr4:55955077-55954778 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 38-633 |
| Cow position: | chr6:17692587-17693158 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 10 |
| Conread position: | 87-487 |
| Cow position: | chr6:29772440-29772059 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 115-639 |
| Cow position: | chr6:57397744-57397234 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 332 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 353-645 |
| Cow position: | chr7:35909695-35909408 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 184, 37 |
| Conread position: | 449-686 |
| Cow position: | chr8:36854050-36854288 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 96 |
| Conread position: | 52-600 |
| Cow position: | chr9:28816440-28816962 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 124 |
| Conread position: | 54-504 |
| Cow position: | chrX:68067-67635 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 54-528 |
| Cow position: | chrX:19807761-19807310 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 54-615 |
| Cow position: | chrX:33171914-33172462 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 54-624 |
| Cow position: | chrX:23268147-23268691 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 60-690 |
| Cow position: | chrX:22962785-22963415 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 420 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 6, 102 |
| Conread position: | 93-597 |
| Cow position: | chrX:1655486-1655012 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 79 |
| Conread position: | 119-686 |
| Cow position: | chrX:12851699-12852273 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 136-645 |
| Cow position: | chrX:27240705-27240211 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 34 |