Cow genome map


           Conread name:
           Liv1-LVRM10074H11
        

               Conread position:
               254-711
               

               Cow position:
               chr1:76748875-76748397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 147
               

               Conread position:
               258-711
               

               Cow position:
               chr1:2600175-2599709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 112
               

               Conread position:
               259-704
               

               Cow position:
               chr1:53650179-53650637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 53
               

               Conread position:
               259-711
               

               Cow position:
               chr1:28876626-28877093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               259-711
               

               Cow position:
               chr1:40603558-40604023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 14
               

               Conread position:
               259-711
               

               Cow position:
               chr1:52171312-52170847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 93
               

               Conread position:
               259-721
               

               Cow position:
               chr1:56619416-56618949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 299
               

               Conread position:
               260-711
               

               Cow position:
               chr1:4337287-4337754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               260-711
               

               Cow position:
               chr1:30531502-30531037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 409
               

               Conread position:
               261-705
               

               Cow position:
               chr1:61006291-61005831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 301
               

               Conread position:
               261-708
               

               Cow position:
               chr1:73443341-73442886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 112
               

               Conread position:
               261-710
               

               Cow position:
               chr1:85776930-85776465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 202
               

               Conread position:
               261-711
               

               Cow position:
               chr1:10071576-10071110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 196
               

               Conread position:
               261-711
               

               Cow position:
               chr1:14240535-14240069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 262
               

               Conread position:
               261-711
               

               Cow position:
               chr1:32563007-32562541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               261-711
               

               Cow position:
               chr1:52355141-52354678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 75
               

               Conread position:
               261-711
               

               Cow position:
               chr1:52508091-52507625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 298
               

               Conread position:
               261-711
               

               Cow position:
               chr1:65390089-65390559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               261-722
               

               Cow position:
               chr1:68783377-68782910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 53
               

               Conread position:
               262-703
               

               Cow position:
               chr1:81779205-81779661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 21
               

               Conread position:
               262-705
               

               Cow position:
               chr1:90605304-90604853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 21
               

               Conread position:
               262-705
               

               Cow position:
               chr1:97205891-97206345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 11
               

               Conread position:
               262-711
               

               Cow position:
               chr1:17938216-17937755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 21
               

               Conread position:
               267-728
               

               Cow position:
               chr1:70380874-70380401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 218
               

               Conread position:
               268-706
               

               Cow position:
               chr1:94879541-94879091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 287
               

               Conread position:
               268-711
               

               Cow position:
               chr1:82091435-82091889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               311
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               160, 80
               

               Conread position:
               269-711
               

               Cow position:
               chr1:76020400-76019943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 295
               

               Conread position:
               269-718
               

               Cow position:
               chr1:64251785-64251320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 42
               

               Conread position:
               270-705
               

               Cow position:
               chr1:67009447-67008998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               305
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               157, 41
               

               Conread position:
               270-726
               

               Cow position:
               chr1:54116785-54117240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 37
               

               Conread position:
               279-711
               

               Cow position:
               chr1:39100328-39100776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               280-711
               

               Cow position:
               chr1:62711638-62711192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               283-748
               

               Cow position:
               chr1:98612501-98612984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               318
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               113, 89
               

               Conread position:
               287-704
               

               Cow position:
               chr1:24446432-24445996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 33
               

               Conread position:
               287-711
               

               Cow position:
               chr1:56720942-56720503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-724
               

               Cow position:
               chr1:23932300-23931843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               17, 59
               

               Conread position:
               289-711
               

               Cow position:
               chr1:90393196-90392761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 98
               

               Conread position:
               290-705
               

               Cow position:
               chr1:64717330-64716904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               290
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               158, 18
               

               Conread position:
               290-710
               

               Cow position:
               chr1:8828582-8829019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 267
               

               Conread position:
               297-722
               

               Cow position:
               chr1:61591469-61591031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 134
               

               Conread position:
               299-726
               

               Cow position:
               chr1:99105579-99105135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 259
               

               Conread position:
               323-706
               

               Cow position:
               chr1:76223353-76222959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 49
               

               Conread position:
               324-703
               

               Cow position:
               chr1:95500158-95499766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               122, 19
               

               Conread position:
               333-703
               

               Cow position:
               chr1:53312754-53313138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               333-711
               

               Cow position:
               chr1:3382307-3381917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               103, 61
               

               Conread position:
               333-711
               

               Cow position:
               chr1:13438897-13439285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               262
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               103, 214
               

               Conread position:
               351-705
               

               Cow position:
               chr1:57576403-57576031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               359-711
               

               Cow position:
               chr1:23670163-23669795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               366-711
               

               Cow position:
               chr1:53397365-53397721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               70, 28
               

               Conread position:
               374-711
               

               Cow position:
               chr1:74283678-74283327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               62, 159
               

               Conread position:
               374-711
               

               Cow position:
               chr1:85163447-85163095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               66, 115
               

               Conread position:
               378-721
               

               Cow position:
               chr1:43353260-43352901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               50, 179
               

               Conread position:
               395-711
               

               Cow position:
               chr1:31646762-31646432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               440-711
               

               Cow position:
               chr1:77553478-77553195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               442-711
               

               Cow position:
               chr1:44962731-44962453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               24, 114
               

               Conread position:
               455-711
               

               Cow position:
               chr1:61747690-61747423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               17, 99
               

               Conread position:
               462-722
               

               Cow position:
               chr1:41004887-41004620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               102, 90
               

               Conread position:
               463-703
               

               Cow position:
               chr1:40479873-40479632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               96, 28
               

               Conread position:
               463-705
               

               Cow position:
               chr1:84169981-84170233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               83, 96
               

               Conread position:
               469-705
               

               Cow position:
               chr1:3963106-3963350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               96, 83
               

               Conread position:
               470-704
               

               Cow position:
               chr1:55163412-55163655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 82
               

               Conread position:
               473-694
               

               Cow position:
               chr1:77168467-77168693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               123, 46
               

               Conread position:
               478-705
               

               Cow position:
               chr1:19442332-19442570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               482-711
               

               Cow position:
               chr1:89510657-89510418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               83, 69
               

               Conread position:
               485-706
               

               Cow position:
               chr1:24595325-24595549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               74, 57
               

               Conread position:
               485-711
               

               Cow position:
               chr1:44136944-44136714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               21, 68
               

               Conread position:
               488-711
               

               Cow position:
               chr1:22221353-22221121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               71, 54
               

               Conread position:
               488-711
               

               Cow position:
               chr1:42740787-42741020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               527-706
               

               Cow position:
               chr1:61735899-61735710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               32, 25
               

               Conread position:
               255-704
               

               Cow position:
               chr10:32173977-32174440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 58
               

               Conread position:
               255-706
               

               Cow position:
               chr10:46242688-46243141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               315
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               184, 119
               

               Conread position:
               258-711
               

               Cow position:
               chr10:39619992-39620435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               25, 53
               

               Conread position:
               259-711
               

               Cow position:
               chr10:10859992-10859524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               259-711
               

               Cow position:
               chr10:29174779-29175237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 108
               

               Conread position:
               259-711
               

               Cow position:
               chr10:39441717-39442190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               260-711
               

               Cow position:
               chr10:11220975-11221426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               310
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               173, 13
               

               Conread position:
               260-714
               

               Cow position:
               chr10:22632762-22632313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 23
               

               Conread position:
               261-704
               

               Cow position:
               chr10:30456610-30456151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               316
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               17, 76
               

               Conread position:
               261-710
               

               Cow position:
               chr10:15296345-15296806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 35
               

               Conread position:
               261-711
               

               Cow position:
               chr10:22105037-22105499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 72
               

               Conread position:
               261-711
               

               Cow position:
               chr10:23412603-23413063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 149
               

               Conread position:
               261-711
               

               Cow position:
               chr10:29815825-29816294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 301
               

               Conread position:
               261-711
               

               Cow position:
               chr10:34580762-34580298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 225
               

               Conread position:
               264-705
               

               Cow position:
               chr10:51836918-51836458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 294
               

               Conread position:
               269-706
               

               Cow position:
               chr10:2516599-2517048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 64
               

               Conread position:
               269-706
               

               Cow position:
               chr10:52826063-52825612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 288
               

               Conread position:
               269-711
               

               Cow position:
               chr10:52277980-52278427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 112
               

               Conread position:
               269-716
               

               Cow position:
               chr10:29628704-29628243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 171
               

               Conread position:
               270-711
               

               Cow position:
               chr10:22528651-22528194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 288
               

               Conread position:
               270-711
               

               Cow position:
               chr10:24743531-24743986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 139
               

               Conread position:
               279-711
               

               Cow position:
               chr10:42229920-42230363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 226
               

               Conread position:
               280-711
               

               Cow position:
               chr10:39439056-39438610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 22
               

               Conread position:
               282-711
               

               Cow position:
               chr10:57458006-57458425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               146, 46
               

               Conread position:
               285-704
               

               Cow position:
               chr10:38154728-38155164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 79
               

               Conread position:
               285-711
               

               Cow position:
               chr10:1488134-1488553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               290
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               151, 104
               

               Conread position:
               285-711
               

               Cow position:
               chr10:8459805-8460232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               295
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               265, 104
               

               Conread position:
               287-706
               

               Cow position:
               chr10:25562973-25562540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 270
               

               Conread position:
               287-706
               

               Cow position:
               chr10:52028090-52028523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-706
               

               Cow position:
               chr10:61323279-61323712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 270
               

               Conread position:
               287-711
               

               Cow position:
               chr10:277774-277336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 269
               

               Conread position:
               287-711
               

               Cow position:
               chr10:32036625-32037064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 270
               

               Conread position:
               287-711
               

               Cow position:
               chr10:37908565-37908125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 271
               

               Conread position:
               288-711
               

               Cow position:
               chr10:39037466-39037032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 23
               

               Conread position:
               290-711
               

               Cow position:
               chr10:21490511-21490947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 268
               

               Conread position:
               290-731
               

               Cow position:
               chr10:29812141-29811689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 102
               

               Conread position:
               295-712
               

               Cow position:
               chr10:2612663-2613088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               274
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               140, 122
               

               Conread position:
               296-714
               

               Cow position:
               chr10:15912055-15912481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               151, 31
               

               Conread position:
               304-705
               

               Cow position:
               chr10:11274938-11275350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 57
               

               Conread position:
               315-696
               

               Cow position:
               chr10:33215110-33215492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               249, 78
               

               Conread position:
               325-705
               

               Cow position:
               chr10:20551837-20552232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               122, 232
               

               Conread position:
               333-711
               

               Cow position:
               chr10:10134297-10134683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               267
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               138, 119
               

               Conread position:
               341-739
               

               Cow position:
               chr10:34299807-34300216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 180
               

               Conread position:
               355-706
               

               Cow position:
               chr10:10519615-10519976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               44, 131
               

               Conread position:
               363-711
               

               Cow position:
               chr10:19140670-19140306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               73, 308
               

               Conread position:
               366-711
               

               Cow position:
               chr10:14640000-14639644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               70, 186
               

               Conread position:
               369-705
               

               Cow position:
               chr10:30359879-30360230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               25, 150
               

               Conread position:
               371-711
               

               Cow position:
               chr10:28030091-28029732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               389-711
               

               Cow position:
               chr10:3495981-3496318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               47, 281
               

               Conread position:
               389-711
               

               Cow position:
               chr10:37708841-37708509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               39, 167
               

               Conread position:
               393-739
               

               Cow position:
               chr10:53357010-53357370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               248
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               48, 162
               

               Conread position:
               402-706
               

               Cow position:
               chr10:25649754-25649436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               33, 155
               

               Conread position:
               431-705
               

               Cow position:
               chr10:50776117-50776404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               34, 8
               

               Conread position:
               440-711
               

               Cow position:
               chr10:2408466-2408180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               16, 10
               

               Conread position:
               446-703
               

               Cow position:
               chr10:7367363-7367100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               112, 23
               

               Conread position:
               468-711
               

               Cow position:
               chr10:39857204-39857456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               144, 5
               

               Conread position:
               481-710
               

               Cow position:
               chr10:43487183-43487419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               78, 71
               

               Conread position:
               481-711
               

               Cow position:
               chr10:22390064-22390303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               492-718
               

               Cow position:
               chr10:33220266-33220031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               67, 60
               

               Conread position:
               259-694
               

               Cow position:
               chr11:81337718-81337271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 40
               

               Conread position:
               259-711
               

               Cow position:
               chr11:56463555-56464024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 116
               

               Conread position:
               261-711
               

               Cow position:
               chr11:5482251-5481786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 409
               

               Conread position:
               261-711
               

               Cow position:
               chr11:10851308-10851775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 411
               

               Conread position:
               261-711
               

               Cow position:
               chr11:17890474-17890011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 126
               

               Conread position:
               261-711
               

               Cow position:
               chr11:51028611-51029063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 48
               

               Conread position:
               261-714
               

               Cow position:
               chr11:44915490-44915020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 20
               

               Conread position:
               261-718
               

               Cow position:
               chr11:17832002-17831516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               327
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               19, 191
               

               Conread position:
               261-738
               

               Cow position:
               chr11:75511005-75510515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 42
               

               Conread position:
               264-711
               

               Cow position:
               chr11:11991197-11991657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 293
               

               Conread position:
               273-705
               

               Cow position:
               chr11:30110218-30110659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               279-711
               

               Cow position:
               chr11:33687274-33686835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 199
               

               Conread position:
               285-705
               

               Cow position:
               chr11:13061942-13061514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 138
               

               Conread position:
               287-706
               

               Cow position:
               chr11:10949199-10948767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-711
               

               Cow position:
               chr11:33601417-33600976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 385
               

               Conread position:
               290-711
               

               Cow position:
               chr11:45647558-45647124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               294-689
               

               Cow position:
               chr11:14650011-14649608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 27
               

               Conread position:
               299-712
               

               Cow position:
               chr11:58049415-58048986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 250
               

               Conread position:
               300-711
               

               Cow position:
               chr11:48271499-48271907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               140, 63
               

               Conread position:
               306-748
               

               Cow position:
               chr11:18484894-18484454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               284
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               141, 23
               

               Conread position:
               309-711
               

               Cow position:
               chr11:9654250-9653837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               277
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               138, 29
               

               Conread position:
               309-711
               

               Cow position:
               chr11:37278894-37278487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               27, 284
               

               Conread position:
               330-704
               

               Cow position:
               chr11:19787466-19787853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               106, 5
               

               Conread position:
               336-711
               

               Cow position:
               chr11:18537929-18537539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               341-711
               

               Cow position:
               chr11:8212103-8212487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               260
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               95, 182
               

               Conread position:
               348-706
               

               Cow position:
               chr11:66020290-66019923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 21
               

               Conread position:
               355-706
               

               Cow position:
               chr11:33192976-33192610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               81, 362
               

               Conread position:
               367-748
               

               Cow position:
               chr11:38832062-38831665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               69, 190
               

               Conread position:
               374-738
               

               Cow position:
               chr11:17228286-17227922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               23, 152
               

               Conread position:
               398-711
               

               Cow position:
               chr11:64047706-64048032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               41, 96
               

               Conread position:
               417-711
               

               Cow position:
               chr11:13942222-13942522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               30, 98
               

               Conread position:
               440-705
               

               Cow position:
               chr11:35362928-35363201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               25, 57
               

               Conread position:
               440-705
               

               Cow position:
               chr11:59414608-59414880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               31, 125
               

               Conread position:
               440-718
               

               Cow position:
               chr11:24032356-24032644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               25, 284
               

               Conread position:
               441-722
               

               Cow position:
               chr11:16632659-16632374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               24, 94
               

               Conread position:
               462-716
               

               Cow position:
               chr11:15286170-15285902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               39, 33
               

               Conread position:
               476-704
               

               Cow position:
               chr11:30191628-30191868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               47, 78
               

               Conread position:
               481-722
               

               Cow position:
               chr11:61455065-61454813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               82, 71
               

               Conread position:
               492-735
               

               Cow position:
               chr11:2962643-2962897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               67, 5
               

               Conread position:
               259-707
               

               Cow position:
               chr12:1408309-1408772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 411
               

               Conread position:
               259-711
               

               Cow position:
               chr12:28763540-28763073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               261-711
               

               Cow position:
               chr12:25260274-25259809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 262
               

               Conread position:
               267-705
               

               Cow position:
               chr12:758886-759335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               304
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               13, 46
               

               Conread position:
               269-711
               

               Cow position:
               chr12:19972531-19972978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 60
               

               Conread position:
               270-704
               

               Cow position:
               chr12:5905019-5905460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               302
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               166, 96
               

               Conread position:
               270-710
               

               Cow position:
               chr12:19040383-19039926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               279-711
               

               Cow position:
               chr12:27054849-27055299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 38
               

               Conread position:
               283-711
               

               Cow position:
               chr12:3180910-3181352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 250
               

               Conread position:
               290-711
               

               Cow position:
               chr12:29427472-29427035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               283
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               295-705
               

               Cow position:
               chr12:4593357-4593781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 7
               

               Conread position:
               334-705
               

               Cow position:
               chr12:18944346-18943964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 57
               

               Conread position:
               338-711
               

               Cow position:
               chr12:2242588-2242197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               21, 9
               

               Conread position:
               352-711
               

               Cow position:
               chr12:26869463-26869104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               243
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               83, 35
               

               Conread position:
               356-711
               

               Cow position:
               chr12:28188265-28187897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               249
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               78, 16
               

               Conread position:
               362-709
               

               Cow position:
               chr12:25096721-25096359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               252
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               74, 202
               

               Conread position:
               387-720
               

               Cow position:
               chr12:24755670-24755324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               53, 42
               

               Conread position:
               413-712
               

               Cow position:
               chr12:12754246-12753932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               23, 257
               

               Conread position:
               440-705
               

               Cow position:
               chr12:38784531-38784812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               446-711
               

               Cow position:
               chr12:18421509-18421234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 54
               

               Conread position:
               455-711
               

               Cow position:
               chr12:37122940-37123205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               10, 86
               

               Conread position:
               462-711
               

               Cow position:
               chr12:4718515-4718773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               139, 96
               

               Conread position:
               482-706
               

               Cow position:
               chr12:38678146-38678379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               82, 11
               

               Conread position:
               489-713
               

               Cow position:
               chr12:25357778-25357538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               29-206
               

               Cow position:
               chr13:6667004-6667182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               105, 71
               

               Conread position:
               259-711
               

               Cow position:
               chr13:16243960-16243492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               307
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               21, 45
               

               Conread position:
               260-704
               

               Cow position:
               chr13:24691014-24690553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 262
               

               Conread position:
               260-711
               

               Cow position:
               chr13:17377943-17378399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               300
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               214, 73
               

               Conread position:
               261-706
               

               Cow position:
               chr13:42215849-42215388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               261-710
               

               Cow position:
               chr13:24059597-24060075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               322
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               19, 310
               

               Conread position:
               261-711
               

               Cow position:
               chr13:7465826-7465361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 409
               

               Conread position:
               261-711
               

               Cow position:
               chr13:32733917-32733455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 75
               

               Conread position:
               261-711
               

               Cow position:
               chr13:32794074-32793604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               261-711
               

               Cow position:
               chr13:33522686-33522225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 300
               

               Conread position:
               269-738
               

               Cow position:
               chr13:15622566-15622086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 278
               

               Conread position:
               273-711
               

               Cow position:
               chr13:57493477-57493929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 162
               

               Conread position:
               280-704
               

               Cow position:
               chr13:22085059-22085498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 238
               

               Conread position:
               283-711
               

               Cow position:
               chr13:1636708-1637148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               287-709
               

               Cow position:
               chr13:34345599-34346036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 383
               

               Conread position:
               287-711
               

               Cow position:
               chr13:34038262-34037821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 272
               

               Conread position:
               294-710
               

               Cow position:
               chr13:1155024-1155452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 18
               

               Conread position:
               306-711
               

               Cow position:
               chr13:17820591-17821005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 129
               

               Conread position:
               306-716
               

               Cow position:
               chr13:9734625-9734196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 252
               

               Conread position:
               315-711
               

               Cow position:
               chr13:61976304-61976710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               322-710
               

               Cow position:
               chr13:2137891-2137488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 394
               

               Conread position:
               325-749
               

               Cow position:
               chr13:24371052-24370618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               297
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               116, 49
               

               Conread position:
               342-748
               

               Cow position:
               chr13:54095489-54095069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               286
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               86, 9
               

               Conread position:
               354-706
               

               Cow position:
               chr13:17328557-17328206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 260
               

               Conread position:
               356-705
               

               Cow position:
               chr13:51941358-51940990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               90, 200
               

               Conread position:
               356-716
               

               Cow position:
               chr13:22790540-22790165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               404-705
               

               Cow position:
               chr13:19178857-19178534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               38, 153
               

               Conread position:
               405-711
               

               Cow position:
               chr13:55371585-55371906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               31, 118
               

               Conread position:
               455-710
               

               Cow position:
               chr13:33332872-33332605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               10, 65
               

               Conread position:
               458-711
               

               Cow position:
               chr13:19022763-19022502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               142, 97
               

               Conread position:
               461-739
               

               Cow position:
               chr13:6539654-6539940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               93, 17
               

               Conread position:
               486-710
               

               Cow position:
               chr13:6650773-6651005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               72, 18
               

               Conread position:
               3-206
               

               Cow position:
               chr14:38148036-38147829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               10, 96
               

               Conread position:
               258-711
               

               Cow position:
               chr14:18811345-18811806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               325
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               13, 72
               

               Conread position:
               259-710
               

               Cow position:
               chr14:11474189-11473720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               259-711
               

               Cow position:
               chr14:11150779-11150310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 413
               

               Conread position:
               259-738
               

               Cow position:
               chr14:9511596-9511101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 193
               

               Conread position:
               261-705
               

               Cow position:
               chr14:45300062-45300510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 103
               

               Conread position:
               261-710
               

               Cow position:
               chr14:12833990-12834443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 117
               

               Conread position:
               261-711
               

               Cow position:
               chr14:1727284-1727751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               261-711
               

               Cow position:
               chr14:34675238-34675703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 409
               

               Conread position:
               261-711
               

               Cow position:
               chr14:34906665-34907131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 12
               

               Conread position:
               269-711
               

               Cow position:
               chr14:13386134-13385686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 20
               

               Conread position:
               270-718
               

               Cow position:
               chr14:48707340-48707792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 269
               

               Conread position:
               273-711
               

               Cow position:
               chr14:18983578-18984017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 70
               

               Conread position:
               277-707
               

               Cow position:
               chr14:35504653-35505093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               85, 32
               

               Conread position:
               283-711
               

               Cow position:
               chr14:13297444-13297005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 273
               

               Conread position:
               287-706
               

               Cow position:
               chr14:9483114-9483547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-706
               

               Cow position:
               chr14:44367844-44368273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               296
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               15, 25
               

               Conread position:
               287-706
               

               Cow position:
               chr14:49590633-49590205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 259
               

               Conread position:
               287-711
               

               Cow position:
               chr14:16996583-16996137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 173
               

               Conread position:
               287-711
               

               Cow position:
               chr14:24895838-24896276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 76
               

               Conread position:
               287-711
               

               Cow position:
               chr14:50114511-50114946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 77
               

               Conread position:
               288-734
               

               Cow position:
               chr14:33791954-33791503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 197
               

               Conread position:
               289-711
               

               Cow position:
               chr14:44026647-44026211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 295
               

               Conread position:
               337-699
               

               Cow position:
               chr14:37132323-37131956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               123, 86
               

               Conread position:
               341-704
               

               Cow position:
               chr14:39774358-39774736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               95, 216
               

               Conread position:
               352-706
               

               Cow position:
               chr14:10170414-10170060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               270, 29
               

               Conread position:
               362-711
               

               Cow position:
               chr14:39710404-39710767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               80, 307
               

               Conread position:
               418-711
               

               Cow position:
               chr14:39003810-39003505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               136, 36
               

               Conread position:
               469-734
               

               Cow position:
               chr14:44860390-44860669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               96, 52
               

               Conread position:
               480-718
               

               Cow position:
               chr14:44878208-44878455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               79, 72
               

               Conread position:
               485-704
               

               Cow position:
               chr14:2037394-2037623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               78, 98
               

               Conread position:
               254-711
               

               Cow position:
               chr15:6764720-6764250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 306
               

               Conread position:
               259-705
               

               Cow position:
               chr15:9735588-9735140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 106
               

               Conread position:
               259-711
               

               Cow position:
               chr15:42727515-42727981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               261-711
               

               Cow position:
               chr15:6163960-6163503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 112
               

               Conread position:
               261-711
               

               Cow position:
               chr15:35750153-35749687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               261-726
               

               Cow position:
               chr15:41793186-41792705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 467
               

               Conread position:
               262-694
               

               Cow position:
               chr15:25908044-25907605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               304
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               48, 13
               

               Conread position:
               264-706
               

               Cow position:
               chr15:2796490-2796938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 57
               

               Conread position:
               264-711
               

               Cow position:
               chr15:6464212-6464670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               302
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               172, 122
               

               Conread position:
               266-711
               

               Cow position:
               chr15:10243272-10243730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               308
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               171, 59
               

               Conread position:
               269-722
               

               Cow position:
               chr15:36355588-36355119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 289
               

               Conread position:
               280-707
               

               Cow position:
               chr15:8061352-8061800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 277
               

               Conread position:
               285-706
               

               Cow position:
               chr15:23666325-23665890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 272
               

               Conread position:
               285-711
               

               Cow position:
               chr15:4642369-4642810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 30
               

               Conread position:
               285-711
               

               Cow position:
               chr15:37984752-37985198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               287-711
               

               Cow position:
               chr15:3154088-3154526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-711
               

               Cow position:
               chr15:32701567-32701128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               288-711
               

               Cow position:
               chr15:7319737-7320165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 167
               

               Conread position:
               293-694
               

               Cow position:
               chr15:23567329-23567752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 172
               

               Conread position:
               294-711
               

               Cow position:
               chr15:38395411-38394981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 267
               

               Conread position:
               295-706
               

               Cow position:
               chr15:32326101-32325684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               305-728
               

               Cow position:
               chr15:19911153-19910716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 21
               

               Conread position:
               311-705
               

               Cow position:
               chr15:17196907-17196510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               273
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               117, 22
               

               Conread position:
               315-711
               

               Cow position:
               chr15:31993293-31992885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 102
               

               Conread position:
               333-739
               

               Cow position:
               chr15:38875931-38876345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               277
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               103, 5
               

               Conread position:
               334-696
               

               Cow position:
               chr15:52777796-52778161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               106, 22
               

               Conread position:
               346-711
               

               Cow position:
               chr15:32690185-32690565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               91, 211
               

               Conread position:
               356-711
               

               Cow position:
               chr15:38969860-38969495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               72, 162
               

               Conread position:
               357-711
               

               Cow position:
               chr15:22161311-22160938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               89, 206
               

               Conread position:
               363-702
               

               Cow position:
               chr15:15216018-15215664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               65, 11
               

               Conread position:
               372-711
               

               Cow position:
               chr15:30046822-30047177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               56, 195
               

               Conread position:
               388-705
               

               Cow position:
               chr15:4655100-4655432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               52, 46
               

               Conread position:
               390-711
               

               Cow position:
               chr15:6538213-6538544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               46, 146
               

               Conread position:
               405-711
               

               Cow position:
               chr15:38102821-38103142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               31, 152
               

               Conread position:
               426-716
               

               Cow position:
               chr15:24129334-24129037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               21, 119
               

               Conread position:
               440-704
               

               Cow position:
               chr15:25540260-25539985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               25, 114
               

               Conread position:
               455-694
               

               Cow position:
               chr15:25208135-25208391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               15, 104
               

               Conread position:
               455-711
               

               Cow position:
               chr15:14506051-14505786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               10, 68
               

               Conread position:
               456-693
               

               Cow position:
               chr15:32476038-32475787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               9, 98
               

               Conread position:
               457-711
               

               Cow position:
               chr15:15234207-15233940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 211
               

               Conread position:
               462-683
               

               Cow position:
               chr15:6970595-6970365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               97, 90
               

               Conread position:
               462-690
               

               Cow position:
               chr15:47578246-47578008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               462-711
               

               Cow position:
               chr15:29476191-29475933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               137, 202
               

               Conread position:
               543-739
               

               Cow position:
               chr15:19771964-19771757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               259-703
               

               Cow position:
               chr16:5726197-5726652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 71
               

               Conread position:
               259-705
               

               Cow position:
               chr16:31122990-31122526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 133
               

               Conread position:
               259-711
               

               Cow position:
               chr16:7467401-7467872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 250
               

               Conread position:
               261-707
               

               Cow position:
               chr16:6379843-6379383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 258
               

               Conread position:
               261-711
               

               Cow position:
               chr16:10203138-10202674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 408
               

               Conread position:
               261-711
               

               Cow position:
               chr16:10441034-10441501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 298
               

               Conread position:
               261-711
               

               Cow position:
               chr16:23249159-23248702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 141
               

               Conread position:
               261-711
               

               Cow position:
               chr16:23533204-23532739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 409
               

               Conread position:
               261-711
               

               Cow position:
               chr16:23986109-23986564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 301
               

               Conread position:
               261-745
               

               Cow position:
               chr16:19409559-19409060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 227
               

               Conread position:
               262-711
               

               Cow position:
               chr16:28468322-28467861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 21
               

               Conread position:
               268-704
               

               Cow position:
               chr16:41753304-41752859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 11
               

               Conread position:
               269-711
               

               Cow position:
               chr16:11640679-11641135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 102
               

               Conread position:
               269-738
               

               Cow position:
               chr16:11007517-11008019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               270-712
               

               Cow position:
               chr16:48341401-48340958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               309
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               166, 38
               

               Conread position:
               279-710
               

               Cow position:
               chr16:3820451-3820893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 30
               

               Conread position:
               285-711
               

               Cow position:
               chr16:34809190-34809631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 274
               

               Conread position:
               287-706
               

               Cow position:
               chr16:15904398-15903965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-711
               

               Cow position:
               chr16:3148216-3147780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 32
               

               Conread position:
               287-711
               

               Cow position:
               chr16:4080368-4080812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               287-711
               

               Cow position:
               chr16:19062658-19063097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 94
               

               Conread position:
               287-711
               

               Cow position:
               chr16:46555245-46555684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 270
               

               Conread position:
               287-711
               

               Cow position:
               chr16:52527054-52527490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 15
               

               Conread position:
               296-711
               

               Cow position:
               chr16:22825344-22824920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 101
               

               Conread position:
               305-711
               

               Cow position:
               chr16:9736506-9736100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               293, 133
               

               Conread position:
               318-705
               

               Cow position:
               chr16:49450009-49449622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 105
               

               Conread position:
               325-711
               

               Cow position:
               chr16:8620591-8620980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               65, 138
               

               Conread position:
               325-747
               

               Cow position:
               chr16:237563-238012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               309
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               70, 197
               

               Conread position:
               341-711
               

               Cow position:
               chr16:49768872-49768487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               262
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               95, 224
               

               Conread position:
               351-694
               

               Cow position:
               chr16:15442974-15443316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               96, 58
               

               Conread position:
               353-718
               

               Cow position:
               chr16:23991128-23990751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 98
               

               Conread position:
               356-711
               

               Cow position:
               chr16:14351565-14351197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               253
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               80, 190
               

               Conread position:
               356-711
               

               Cow position:
               chr16:45732014-45731642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               33, 205
               

               Conread position:
               367-711
               

               Cow position:
               chr16:54179553-54179195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               68, 195
               

               Conread position:
               369-711
               

               Cow position:
               chr16:24426876-24427233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               59, 188
               

               Conread position:
               458-714
               

               Cow position:
               chr16:40561693-40561960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               105, 94
               

               Conread position:
               469-706
               

               Cow position:
               chr16:14236746-14236992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               90, 83
               

               Conread position:
               470-711
               

               Cow position:
               chr16:15477660-15477910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 82
               

               Conread position:
               480-711
               

               Cow position:
               chr16:22320238-22319996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               34, 73
               

               Conread position:
               482-711
               

               Cow position:
               chr16:5654007-5654246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               77, 70
               

               Conread position:
               485-711
               

               Cow position:
               chr16:24228855-24228620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               74, 67
               

               Conread position:
               486-711
               

               Cow position:
               chr16:51710625-51710398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               73, 66
               

               Conread position:
               259-703
               

               Cow position:
               chr17:18201077-18201540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               316
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               15, 108
               

               Conread position:
               261-699
               

               Cow position:
               chr17:8450067-8450510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 283
               

               Conread position:
               261-711
               

               Cow position:
               chr17:11913394-11912929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               261-711
               

               Cow position:
               chr17:13725618-13726083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 242
               

               Conread position:
               266-715
               

               Cow position:
               chr17:21066134-21065661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               322
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               287-706
               

               Cow position:
               chr17:23321037-23320605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 246
               

               Conread position:
               287-711
               

               Cow position:
               chr17:2584035-2584472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 46
               

               Conread position:
               315-710
               

               Cow position:
               chr17:31310872-31310459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               136, 243
               

               Conread position:
               317-704
               

               Cow position:
               chr17:23101842-23101443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               154, 97
               

               Conread position:
               323-718
               

               Cow position:
               chr17:5767270-5767677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               276
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               15, 108
               

               Conread position:
               334-711
               

               Cow position:
               chr17:38829458-38829854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               63, 8
               

               Conread position:
               336-704
               

               Cow position:
               chr17:24823646-24824029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               342-694
               

               Cow position:
               chr17:20779908-20780272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               100, 213
               

               Conread position:
               349-711
               

               Cow position:
               chr17:18036578-18036216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               79, 167
               

               Conread position:
               362-711
               

               Cow position:
               chr17:20271943-20271585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               74, 133
               

               Conread position:
               369-711
               

               Cow position:
               chr17:4635194-4634845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               28, 259
               

               Conread position:
               371-705
               

               Cow position:
               chr17:17179468-17179805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               7, 197
               

               Conread position:
               405-711
               

               Cow position:
               chr17:20269066-20269383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               23, 35
               

               Conread position:
               419-712
               

               Cow position:
               chr17:8673576-8673881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               46, 135
               

               Conread position:
               439-683
               

               Cow position:
               chr17:3388350-3388605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               26, 40
               

               Conread position:
               440-710
               

               Cow position:
               chr17:9819020-9818735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               25, 86
               

               Conread position:
               462-747
               

               Cow position:
               chr17:30712552-30712850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               102, 90
               

               Conread position:
               478-711
               

               Cow position:
               chr17:40701193-40701442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               505-748
               

               Cow position:
               chr17:6423282-6423536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               54, 47
               

               Conread position:
               22-206
               

               Cow position:
               chr18:54022681-54022866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               117, 78
               

               Conread position:
               259-711
               

               Cow position:
               chr18:35637393-35637858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 14
               

               Conread position:
               261-705
               

               Cow position:
               chr18:12269735-12270184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 286
               

               Conread position:
               261-711
               

               Cow position:
               chr18:28968710-28968244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 410
               

               Conread position:
               263-711
               

               Cow position:
               chr18:10574288-10574751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               265-693
               

               Cow position:
               chr18:28658670-28658228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               266-703
               

               Cow position:
               chr18:601923-601480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 61
               

               Conread position:
               268-711
               

               Cow position:
               chr18:54033296-54033740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               315
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               168, 15
               

               Conread position:
               269-710
               

               Cow position:
               chr18:18860791-18861261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               310
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               103, 14
               

               Conread position:
               279-718
               

               Cow position:
               chr18:47184049-47183581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               317
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               119, 321
               

               Conread position:
               285-711
               

               Cow position:
               chr18:7930855-7930445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               205, 40
               

               Conread position:
               285-738
               

               Cow position:
               chr18:28929841-28929373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               162, 22
               

               Conread position:
               287-706
               

               Cow position:
               chr18:13270516-13270941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 44
               

               Conread position:
               287-706
               

               Cow position:
               chr18:51602059-51601628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 79
               

               Conread position:
               287-711
               

               Cow position:
               chr18:16094487-16094921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 85
               

               Conread position:
               293-711
               

               Cow position:
               chr18:38157934-38157507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 232
               

               Conread position:
               293-718
               

               Cow position:
               chr18:41238138-41238576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 110
               

               Conread position:
               328-720
               

               Cow position:
               chr18:33274596-33275001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 197
               

               Conread position:
               333-711
               

               Cow position:
               chr18:51211470-51211864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               263
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               94, 193
               

               Conread position:
               359-736
               

               Cow position:
               chr18:36186852-36186482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               71, 97
               

               Conread position:
               462-711
               

               Cow position:
               chr18:19760944-19761204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               473-711
               

               Cow position:
               chr18:25165078-25164835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               91, 79
               

               Conread position:
               475-716
               

               Cow position:
               chr18:23631126-23630872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               84, 77
               

               Conread position:
               482-704
               

               Cow position:
               chr18:19193886-19193654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               82, 60
               

               Conread position:
               255-711
               

               Cow position:
               chr19:14103690-14104148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 182
               

               Conread position:
               259-705
               

               Cow position:
               chr19:7472632-7473094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 28
               

               Conread position:
               259-711
               

               Cow position:
               chr19:50833325-50832855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               259-750
               

               Cow position:
               chr19:38397035-38396528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 71
               

               Conread position:
               261-711
               

               Cow position:
               chr19:208080-208547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 264
               

               Conread position:
               261-711
               

               Cow position:
               chr19:40790773-40790313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 247
               

               Conread position:
               268-711
               

               Cow position:
               chr19:12787638-12788099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 12
               

               Conread position:
               283-704
               

               Cow position:
               chr19:37844168-37843749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 32
               

               Conread position:
               287-711
               

               Cow position:
               chr19:40848877-40848439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 87
               

               Conread position:
               289-708
               

               Cow position:
               chr19:40439202-40439638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 258
               

               Conread position:
               289-750
               

               Cow position:
               chr19:25085801-25086285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               325-707
               

               Cow position:
               chr19:6531259-6531658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               111, 131
               

               Conread position:
               333-711
               

               Cow position:
               chr19:1901677-1901282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               95, 39
               

               Conread position:
               350-711
               

               Cow position:
               chr19:31783614-31783981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               85, 135
               

               Conread position:
               356-710
               

               Cow position:
               chr19:7625-7996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               72, 193
               

               Conread position:
               395-750
               

               Cow position:
               chr19:30551435-30551804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               41, 162
               

               Conread position:
               423-727
               

               Cow position:
               chr19:47187747-47187428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 96
               

               Conread position:
               439-705
               

               Cow position:
               chr19:5434614-5434341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               32, 104
               

               Conread position:
               446-711
               

               Cow position:
               chr19:29416311-29416584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               19, 156
               

               Conread position:
               455-711
               

               Cow position:
               chr19:5656658-5656391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 99
               

               Conread position:
               458-711
               

               Cow position:
               chr19:7542879-7543141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               26, 95
               

               Conread position:
               462-722
               

               Cow position:
               chr19:37633884-37633623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               152, 157
               

               Conread position:
               473-711
               

               Cow position:
               chr19:51645067-51644817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               91, 79
               

               Conread position:
               474-711
               

               Cow position:
               chr19:34956224-34955978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               85, 78
               

               Conread position:
               482-705
               

               Cow position:
               chr19:41139925-41139691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               1-206
               

               Cow position:
               chr2:50982439-50982646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               113, 19
               

               Conread position:
               259-711
               

               Cow position:
               chr2:9591206-9591670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 16
               

               Conread position:
               259-711
               

               Cow position:
               chr2:80288729-80288258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 415
               

               Conread position:
               259-722
               

               Cow position:
               chr2:32409237-32408770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 298
               

               Conread position:
               261-704
               

               Cow position:
               chr2:59397787-59397335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 220
               

               Conread position:
               261-705
               

               Cow position:
               chr2:57557665-57557206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               261-710
               

               Cow position:
               chr2:8121727-8122185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 82
               

               Conread position:
               261-711
               

               Cow position:
               chr2:44094394-44094856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 73
               

               Conread position:
               261-711
               

               Cow position:
               chr2:50080594-50081058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 0
               

               Conread position:
               261-716
               

               Cow position:
               chr2:32417604-32417134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 72
               

               Conread position:
               262-728
               

               Cow position:
               chr2:36879015-36878537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 11
               

               Conread position:
               264-750
               

               Cow position:
               chr2:26878670-26879169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 9
               

               Conread position:
               266-710
               

               Cow position:
               chr2:19212770-19212313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 76
               

               Conread position:
               268-749
               

               Cow position:
               chr2:60937261-60937758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               324
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               165, 143
               

               Conread position:
               269-711
               

               Cow position:
               chr2:16415156-16415624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 300
               

               Conread position:
               270-711
               

               Cow position:
               chr2:27179409-27179864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 126
               

               Conread position:
               270-726
               

               Cow position:
               chr2:41451499-41451973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 124
               

               Conread position:
               285-711
               

               Cow position:
               chr2:70524810-70525249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 383
               

               Conread position:
               287-702
               

               Cow position:
               chr2:56054797-56055226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               287-704
               

               Cow position:
               chr2:24270522-24270948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               292
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               148, 38
               

               Conread position:
               287-706
               

               Cow position:
               chr2:2181218-2180787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 66
               

               Conread position:
               287-711
               

               Cow position:
               chr2:11152925-11152496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 70
               

               Conread position:
               287-711
               

               Cow position:
               chr2:12595994-12596433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               287-711
               

               Cow position:
               chr2:65935154-65934715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 383
               

               Conread position:
               288-703
               

               Cow position:
               chr2:86532567-86532997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               288-705
               

               Cow position:
               chr2:53533504-53533082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               282
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               148, 235
               

               Conread position:
               288-710
               

               Cow position:
               chr2:17808291-17808730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 384
               

               Conread position:
               288-711
               

               Cow position:
               chr2:16717846-16717414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 57
               

               Conread position:
               289-711
               

               Cow position:
               chr2:1186798-1186362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 230
               

               Conread position:
               290-711
               

               Cow position:
               chr2:37008714-37009149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               112, 91
               

               Conread position:
               293-714
               

               Cow position:
               chr2:15488814-15488373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 269
               

               Conread position:
               297-705
               

               Cow position:
               chr2:6539938-6539512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               290
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               139, 193
               

               Conread position:
               299-711
               

               Cow position:
               chr2:43978601-43978170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               294
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               88, 78
               

               Conread position:
               307-705
               

               Cow position:
               chr2:10744155-10743749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 139
               

               Conread position:
               307-706
               

               Cow position:
               chr2:47768312-47768722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 42
               

               Conread position:
               309-704
               

               Cow position:
               chr2:42361306-42361714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               133, 54
               

               Conread position:
               314-705
               

               Cow position:
               chr2:82268004-82267604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               273
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               122, 241
               

               Conread position:
               321-711
               

               Cow position:
               chr2:43473512-43473921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 237
               

               Conread position:
               329-710
               

               Cow position:
               chr2:549981-549589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               107, 218
               

               Conread position:
               333-711
               

               Cow position:
               chr2:32113631-32113241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               102, 67
               

               Conread position:
               352-711
               

               Cow position:
               chr2:31265147-31264773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               94, 77
               

               Conread position:
               362-704
               

               Cow position:
               chr2:2672896-2673249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               71, 87
               

               Conread position:
               366-711
               

               Cow position:
               chr2:7506250-7505889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               5, 192
               

               Conread position:
               367-712
               

               Cow position:
               chr2:36397305-36397662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               92, 19
               

               Conread position:
               413-711
               

               Cow position:
               chr2:65604509-65604196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               23, 144
               

               Conread position:
               446-711
               

               Cow position:
               chr2:53659065-53658786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               19, 223
               

               Conread position:
               446-750
               

               Cow position:
               chr2:61974237-61974549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               19, 108
               

               Conread position:
               455-706
               

               Cow position:
               chr2:84996780-84997042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               9, 99
               

               Conread position:
               455-725
               

               Cow position:
               chr2:24470462-24470194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               10, 88
               

               Conread position:
               458-716
               

               Cow position:
               chr2:1421854-1422116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               69, 95
               

               Conread position:
               462-711
               

               Cow position:
               chr2:36056324-36056066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               97, 65
               

               Conread position:
               464-740
               

               Cow position:
               chr2:58321318-58321024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               12, 91
               

               Conread position:
               469-705
               

               Cow position:
               chr2:24540072-24540317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               129, 24
               

               Conread position:
               480-711
               

               Cow position:
               chr2:39385367-39385132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               121, 67
               

               Conread position:
               481-711
               

               Cow position:
               chr2:1365403-1365163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               83, 71
               

               Conread position:
               481-720
               

               Cow position:
               chr2:27358536-27358781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               78, 71
               

               Conread position:
               482-704
               

               Cow position:
               chr2:42226778-42226546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               82, 70
               

               Conread position:
               485-711
               

               Cow position:
               chr2:46311948-46312182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               79, 67
               

               Conread position:
               488-711
               

               Cow position:
               chr2:71800592-71800360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               71, 64
               

               Conread position:
               490-734
               

               Cow position:
               chr2:1202645-1202900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               74, 62
               

               Conread position:
               505-705
               

               Cow position:
               chr2:19748926-19749134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               54, 47
               

               Conread position:
               3-206
               

               Cow position:
               chr20:18313927-18314118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               255-711
               

               Cow position:
               chr20:13789617-13790082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               315
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               23, 179
               

               Conread position:
               256-710
               

               Cow position:
               chr20:21398359-21398813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               312
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               10, 46
               

               Conread position:
               257-711
               

               Cow position:
               chr20:10235156-10235625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               319
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               21, 92
               

               Conread position:
               259-711
               

               Cow position:
               chr20:6258748-6258290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               259-711
               

               Cow position:
               chr20:25658484-25658016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 177
               

               Conread position:
               259-711
               

               Cow position:
               chr20:40781284-40781750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 288
               

               Conread position:
               261-705
               

               Cow position:
               chr20:34776438-34776902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 188
               

               Conread position:
               266-711
               

               Cow position:
               chr20:21018875-21019338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 261
               

               Conread position:
               268-707
               

               Cow position:
               chr20:12421318-12420869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 11
               

               Conread position:
               268-711
               

               Cow position:
               chr20:12996687-12996236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               316
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               174, 11
               

               Conread position:
               272-723
               

               Cow position:
               chr20:23871502-23871031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 286
               

               Conread position:
               277-716
               

               Cow position:
               chr20:3059996-3059539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 213
               

               Conread position:
               279-710
               

               Cow position:
               chr20:7110794-7110346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 23
               

               Conread position:
               283-706
               

               Cow position:
               chr20:31504904-31505340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 274
               

               Conread position:
               287-706
               

               Cow position:
               chr20:8445987-8446420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 269
               

               Conread position:
               301-709
               

               Cow position:
               chr20:11635411-11635000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               11, 99
               

               Conread position:
               355-711
               

               Cow position:
               chr20:14719344-14718967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               259
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               33, 208
               

               Conread position:
               356-711
               

               Cow position:
               chr20:29844444-29844818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               105, 194
               

               Conread position:
               358-705
               

               Cow position:
               chr20:7757221-7756860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               78, 189
               

               Conread position:
               363-705
               

               Cow position:
               chr20:24903205-24902849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               72, 99
               

               Conread position:
               371-702
               

               Cow position:
               chr20:12034300-12033952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               65, 189
               

               Conread position:
               396-711
               

               Cow position:
               chr20:12839501-12839831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               413-711
               

               Cow position:
               chr20:7527902-7527586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               456-711
               

               Cow position:
               chr20:28439584-28439850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               459-705
               

               Cow position:
               chr20:7710698-7710440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               470-711
               

               Cow position:
               chr20:5668985-5668729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               89, 82
               

               Conread position:
               470-737
               

               Cow position:
               chr20:40512270-40511989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               89, 72
               

               Conread position:
               485-711
               

               Cow position:
               chr20:32866808-32866573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               74, 115
               
259-704UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr21:9201512-9201979 (view  custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 300
               
259-711UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr21:27287628-27288100 (view  custom track)

               
               
               
Alignm length:474

               
               
               
Alignm identity:331

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):29, 14
260-711UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr21:37353085-37352624 (view  custom track)

               
               
               
Alignm length:467

               
               
               
Alignm identity:318

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):26, 56

               
               
               Conread position:261-711
               
               
               Cow position:chr21:3782430-3782894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 408

               
               
               Conread position:261-711
               
               
               Cow position:chr21:28259319-28259791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:261-716
               
               
               Cow position:chr21:33728765-33729233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:261-718
               
               
               Cow position:chr21:12076074-12075615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:261-722
               
               
               Cow position:chr21:29942327-29942807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:264-702
               
               
               Cow position:chr21:20243939-20243503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:273-711
               
               
               Cow position:chr21:30250864-30250414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:279-711
               
               
               Cow position:chr21:13302872-13303323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 283

               
               
               Conread position:281-704
               
               
               Cow position:chr21:5595014-5595451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:287-711
               
               
               Cow position:chr21:2878154-2877718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 24

               
               
               Conread position:287-711
               
               
               Cow position:chr21:7666701-7666262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 383

               
               
               Conread position:287-711
               
               
               Cow position:chr21:27608008-27607569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 270

               
               
               Conread position:289-711
               
               
               Cow position:chr21:4265881-4265470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 138

               
               
               Conread position:298-694
               
               
               Cow position:chr21:38907902-38908321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 262

               
               
               Conread position:315-710
               
               
               Cow position:chr21:3814084-3813674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 242

               
               
               Conread position:315-711
               
               
               Cow position:chr21:750122-750532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 80

               
               
               Conread position:317-706
               
               
               Cow position:chr21:26736916-26736514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:325-704
               
               
               Cow position:chr21:4905574-4905180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:336-704
               
               
               Cow position:chr21:27623310-27623696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 242

               
               
               Conread position:347-728
               
               
               Cow position:chr21:36995776-36995382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:352-711
               
               
               Cow position:chr21:32298086-32297708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 209

               
               
               Conread position:354-705
               
               
               Cow position:chr21:31276157-31276509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 85

               
               
               Conread position:358-706
               
               
               Cow position:chr21:43598853-43599199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:358-711
               
               
               Cow position:chr21:18979429-18979062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 206

               
               
               Conread position:363-712
               
               
               Cow position:chr21:48485006-48484645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:406-709
               
               
               Cow position:chr21:33983333-33983018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:440-711
               
               
               Cow position:chr21:2871204-2870922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:446-711
               
               
               Cow position:chr21:44671272-44671547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:447-711
               
               
               Cow position:chr21:5630160-5629884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:466-704
               
               
               Cow position:chr21:49662883-49662629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:469-711
               
               
               Cow position:chr21:46912085-46912338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:470-711
               
               
               Cow position:chr21:8981582-8981330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:251-722
               
               
               Cow position:chr22:17853661-17853179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 213

               
               
               Conread position:256-711
               
               
               Cow position:chr22:36555667-36555201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:258-711
               
               
               Cow position:chr22:34597206-34597659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:305
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:259-704
               
               
               Cow position:chr22:1874001-1874442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:259-705
               
               
               Cow position:chr22:39695576-39696032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:259-711
               
               
               Cow position:chr22:22048718-22048250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:261-704
               
               
               Cow position:chr22:41271726-41271270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:261-711
               
               
               Cow position:chr22:9685291-9685747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 82

               
               
               Conread position:261-711
               
               
               Cow position:chr22:29464375-29464833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 50

               
               
               Conread position:261-711
               
               
               Cow position:chr22:36858089-36857626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 286

               
               
               Conread position:261-711
               
               
               Cow position:chr22:44462783-44463258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:261-716
               
               
               Cow position:chr22:31870987-31870520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 221

               
               
               Conread position:266-703
               
               
               Cow position:chr22:29062605-29063054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 127

               
               
               Conread position:269-711
               
               
               Cow position:chr22:33093831-33094288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 257

               
               
               Conread position:278-704
               
               
               Cow position:chr22:14155452-14154995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 138

               
               
               Conread position:280-711
               
               
               Cow position:chr22:32891989-32892427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 121

               
               
               Conread position:283-694
               
               
               Cow position:chr22:12893313-12892891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:283-711
               
               
               Cow position:chr22:31331364-31330924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 152

               
               
               Conread position:288-706
               
               
               Cow position:chr22:29501266-29501692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 267

               
               
               Conread position:288-711
               
               
               Cow position:chr22:8773492-8773056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 106

               
               
               Conread position:288-711
               
               
               Cow position:chr22:30514543-30514982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 270

               
               
               Conread position:294-718
               
               
               Cow position:chr22:21896740-21897182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 272

               
               
               Conread position:333-711
               
               
               Cow position:chr22:41477085-41476694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):55, 140

               
               
               Conread position:352-716
               
               
               Cow position:chr22:39444719-39445096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:352-719
               
               
               Cow position:chr22:2624197-2623808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:352-722
               
               
               Cow position:chr22:34442293-34441908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 187

               
               
               Conread position:355-705
               
               
               Cow position:chr22:5364388-5364017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:364-711
               
               
               Cow position:chr22:34902371-34902735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 195

               
               
               Conread position:367-714
               
               
               Cow position:chr22:3251620-3251256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 192

               
               
               Conread position:387-711
               
               
               Cow position:chr22:37137275-37137614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 171

               
               
               Conread position:395-711
               
               
               Cow position:chr22:3837841-3837514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:429-711
               
               
               Cow position:chr22:38959947-38959653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:433-711
               
               
               Cow position:chr22:138364-138654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:450-744
               
               
               Cow position:chr22:34900394-34900699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:481-711
               
               
               Cow position:chr22:30689117-30689358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:482-711
               
               
               Cow position:chr22:8357102-8357341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 70

               
               
               Conread position:485-710
               
               
               Cow position:chr22:21011884-21012119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:485-711
               
               
               Cow position:chr22:12637174-12637409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):115, 94

               
               
               Conread position:20-206
               
               
               Cow position:chr23:25682604-25682786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:256-710
               
               
               Cow position:chr23:40825271-40825725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:259-710
               
               
               Cow position:chr23:10554749-10554280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 309

               
               
               Conread position:259-711
               
               
               Cow position:chr23:15529062-15529518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:261-704
               
               
               Cow position:chr23:5721720-5721277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 201

               
               
               Conread position:261-711
               
               
               Cow position:chr23:3167518-3167975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:264-711
               
               
               Cow position:chr23:14910950-14910493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:264-711
               
               
               Cow position:chr23:26941251-26941714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 299

               
               
               Conread position:272-738
               
               
               Cow position:chr23:28830699-28831160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:338
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:273-710
               
               
               Cow position:chr23:1535606-1536053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 245

               
               
               Conread position:279-712
               
               
               Cow position:chr23:1604519-1604960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 225

               
               
               Conread position:287-705
               
               
               Cow position:chr23:4892201-4892635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 384

               
               
               Conread position:287-706
               
               
               Cow position:chr23:3286264-3286683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 45

               
               
               Conread position:287-706
               
               
               Cow position:chr23:5458244-5458677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 270

               
               
               Conread position:287-711
               
               
               Cow position:chr23:10936791-10936352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:303-711
               
               
               Cow position:chr23:11209306-11209723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 158

               
               
               Conread position:307-711
               
               
               Cow position:chr23:21395284-21394863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:352-711
               
               
               Cow position:chr23:4273543-4273913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:359-705
               
               
               Cow position:chr23:39050050-39049686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:366-718
               
               
               Cow position:chr23:40503119-40502763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 227

               
               
               Conread position:399-704
               
               
               Cow position:chr23:10843741-10844051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:413-705
               
               
               Cow position:chr23:29033665-29033961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:465-711
               
               
               Cow position:chr23:8959074-8959331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:469-711
               
               
               Cow position:chr23:18203965-18204217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:480-710
               
               
               Cow position:chr23:3282894-3282654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:481-704
               
               
               Cow position:chr23:6366749-6366969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:488-705
               
               
               Cow position:chr23:35941727-35941952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 64

               
               
               Conread position:552-748
               
               
               Cow position:chr23:5420946-5420740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:8-206
               
               
               Cow position:chr24:17370536-17370718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:257-711
               
               
               Cow position:chr24:17544394-17543926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 265

               
               
               Conread position:257-711
               
               
               Cow position:chr24:27905672-27906134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 204

               
               
               Conread position:259-694
               
               
               Cow position:chr24:31770045-31770500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:259-704
               
               
               Cow position:chr24:31308652-31309123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 302

               
               
               Conread position:260-694
               
               
               Cow position:chr24:27684202-27683748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):19, 341

               
               
               Conread position:261-711
               
               
               Cow position:chr24:19466688-19466227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:261-711
               
               
               Cow position:chr24:36027944-36027478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 297

               
               
               Conread position:280-711
               
               
               Cow position:chr24:15667158-15666704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:285-710
               
               
               Cow position:chr24:40466817-40466378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 227

               
               
               Conread position:286-711
               
               
               Cow position:chr24:11886427-11886868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:287-711
               
               
               Cow position:chr24:202361-201927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):149, 232

               
               
               Conread position:287-711
               
               
               Cow position:chr24:38588380-38588814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 39

               
               
               Conread position:297-707
               
               
               Cow position:chr24:31420175-31420584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):100, 40

               
               
               Conread position:317-711
               
               
               Cow position:chr24:12507793-12508200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:352-711
               
               
               Cow position:chr24:16558351-16557977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):84, 318

               
               
               Conread position:481-750
               
               
               Cow position:chr24:40974461-40974738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:259-711
               
               
               Cow position:chr25:18886219-18885752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr25:21950394-21950854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:259-711
               
               
               Cow position:chr25:33838638-33839116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:316
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 309

               
               
               Conread position:262-711
               
               
               Cow position:chr25:13429843-13429397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):173, 13

               
               
               Conread position:262-711
               
               
               Cow position:chr25:41121274-41121737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:283-710
               
               
               Cow position:chr25:18680889-18681325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:287-706
               
               
               Cow position:chr25:13956095-13955662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 270

               
               
               Conread position:287-711
               
               
               Cow position:chr25:18324062-18323625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 28

               
               
               Conread position:287-735
               
               
               Cow position:chr25:30526079-30525616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:292-711
               
               
               Cow position:chr25:24654869-24654441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 33

               
               
               Conread position:313-705
               
               
               Cow position:chr25:36871174-36871581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:356-704
               
               
               Cow position:chr25:3968768-3969117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 201

               
               
               Conread position:387-711
               
               
               Cow position:chr25:2624039-2624371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):213, 167

               
               
               Conread position:445-720
               
               
               Cow position:chr25:31586495-31586776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):114, 107

               
               
               Conread position:458-705
               
               
               Cow position:chr25:35608258-35608005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:469-711
               
               
               Cow position:chr25:26111760-26112010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:470-708
               
               
               Cow position:chr25:26228073-26228317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 63

               
               
               Conread position:485-705
               
               
               Cow position:chr25:11437310-11437080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:639-738
               
               
               Cow position:chr25:10155821-10155921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:261-711
               
               
               Cow position:chr26:14897612-14898075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 407

               
               
               Conread position:261-711
               
               
               Cow position:chr26:22831515-22831049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 305

               
               
               Conread position:265-711
               
               
               Cow position:chr26:6843693-6843233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 292

               
               
               Conread position:268-711
               
               
               Cow position:chr26:15214515-15214968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:268-711
               
               
               Cow position:chr26:19698658-19698200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 258

               
               
               Conread position:269-717
               
               
               Cow position:chr26:22246966-22247419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):177, 64

               
               
               Conread position:279-706
               
               
               Cow position:chr26:11875870-11875429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 280

               
               
               Conread position:286-711
               
               
               Cow position:chr26:14395929-14395488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 272

               
               
               Conread position:287-706
               
               
               Cow position:chr26:20019644-20020077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 270

               
               
               Conread position:290-718
               
               
               Cow position:chr26:12625554-12625980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 5

               
               
               Conread position:296-710
               
               
               Cow position:chr26:1340936-1341365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:338-698
               
               
               Cow position:chr26:3725761-3726123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):181, 49

               
               
               Conread position:352-711
               
               
               Cow position:chr26:6841084-6840711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):84, 205

               
               
               Conread position:374-711
               
               
               Cow position:chr26:1106803-1107155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:413-705
               
               
               Cow position:chr26:16905776-16906097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 152

               
               
               Conread position:416-706
               
               
               Cow position:chr26:11815268-11814965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 141

               
               
               Conread position:440-711
               
               
               Cow position:chr26:9692847-9692564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:446-711
               
               
               Cow position:chr26:34083310-34083585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:452-711
               
               
               Cow position:chr26:6714809-6714536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 103

               
               
               Conread position:457-739
               
               
               Cow position:chr26:25442463-25442160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:488-699
               
               
               Cow position:chr26:818943-818728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 161

               
               
               Conread position:255-716
               
               
               Cow position:chr27:5423688-5424164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:259-710
               
               
               Cow position:chr27:13198593-13198133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:261-703
               
               
               Cow position:chr27:15033412-15032955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:261-711
               
               
               Cow position:chr27:26545234-26545697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 285

               
               
               Conread position:261-712
               
               
               Cow position:chr27:2557515-2557037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:269-704
               
               
               Cow position:chr27:20828020-20828474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:269-711
               
               
               Cow position:chr27:17476727-17476269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:319
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):167, 45

               
               
               Conread position:285-705
               
               
               Cow position:chr27:19963138-19962709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):120, 46

               
               
               Conread position:287-705
               
               
               Cow position:chr27:5990544-5990114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:287-711
               
               
               Cow position:chr27:16030891-16030453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 124

               
               
               Conread position:298-711
               
               
               Cow position:chr27:1189173-1189587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 83

               
               
               Conread position:299-734
               
               
               Cow position:chr27:4834941-4835373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:333-716
               
               
               Cow position:chr27:17396836-17397233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:334-711
               
               
               Cow position:chr27:21407934-21408322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:353-705
               
               
               Cow position:chr27:12239717-12240084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:370-711
               
               
               Cow position:chr27:13442259-13442612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:415-711
               
               
               Cow position:chr27:2627536-2627846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:440-718
               
               
               Cow position:chr27:13876234-13875948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:457-720
               
               
               Cow position:chr27:21578075-21578354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:469-708
               
               
               Cow position:chr27:23128930-23128683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 83

               
               
               Conread position:493-718
               
               
               Cow position:chr27:20629482-20629247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 59

               
               
               Conread position:507-748
               
               
               Cow position:chr27:27558058-27558314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:251-711
               
               
               Cow position:chr28:1214290-1213813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 142

               
               
               Conread position:254-711
               
               
               Cow position:chr28:10473468-10473944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:259-705
               
               
               Cow position:chr28:3913986-3914440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 209

               
               
               Conread position:259-706
               
               
               Cow position:chr28:22201467-22201917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:259-711
               
               
               Cow position:chr28:17663427-17662958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr28:24603448-24603915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr28:33255842-33256299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:261-711
               
               
               Cow position:chr28:5941007-5941478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 278

               
               
               Conread position:265-620
               
               
               Cow position:chr28:15518743-15518395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):181, 223

               
               
               Conread position:266-718
               
               
               Cow position:chr28:17209443-17209004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 115

               
               
               Conread position:269-712
               
               
               Cow position:chr28:32717697-32717264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:270-705
               
               
               Cow position:chr28:5804798-5805249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 289

               
               
               Conread position:270-733
               
               
               Cow position:chr28:22501197-22500729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 117

               
               
               Conread position:270-734
               
               
               Cow position:chr28:12226984-12226517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 118

               
               
               Conread position:273-711
               
               
               Cow position:chr28:17744801-17744347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 291

               
               
               Conread position:287-705
               
               
               Cow position:chr28:11752857-11752415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):59, 277

               
               
               Conread position:287-706
               
               
               Cow position:chr28:10562956-10563379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 105

               
               
               Conread position:287-710
               
               
               Cow position:chr28:5361715-5361280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 59

               
               
               Conread position:287-711
               
               
               Cow position:chr28:1943744-1943306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 260

               
               
               Conread position:287-711
               
               
               Cow position:chr28:5637602-5638042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 271

               
               
               Conread position:287-711
               
               
               Cow position:chr28:29036099-29035660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:287-711
               
               
               Cow position:chr28:30098428-30098867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 383

               
               
               Conread position:295-710
               
               
               Cow position:chr28:10612270-10611837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:319-704
               
               
               Cow position:chr28:22304191-22304586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):121, 110

               
               
               Conread position:354-703
               
               
               Cow position:chr28:4070332-4070692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):82, 130

               
               
               Conread position:361-711
               
               
               Cow position:chr28:14742169-14742536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:366-711
               
               
               Cow position:chr28:10578240-10577881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:367-705
               
               
               Cow position:chr28:4057078-4057428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):16, 181

               
               
               Conread position:367-706
               
               
               Cow position:chr28:6776256-6775903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 349

               
               
               Conread position:381-705
               
               
               Cow position:chr28:9285972-9285634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:445-714
               
               
               Cow position:chr28:22612361-22612637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:462-694
               
               
               Cow position:chr28:25399361-25399609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):103, 90

               
               
               Conread position:462-709
               
               
               Cow position:chr28:25027791-25028056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 90

               
               
               Conread position:481-705
               
               
               Cow position:chr28:8972470-8972702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:532-705
               
               
               Cow position:chr28:13290631-13290448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:259-690
               
               
               Cow position:chr29:32732592-32733042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 302

               
               
               Conread position:261-709
               
               
               Cow position:chr29:2694196-2694661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:261-711
               
               
               Cow position:chr29:2103338-2103803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 409

               
               
               Conread position:261-711
               
               
               Cow position:chr29:7666766-7666300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:261-711
               
               
               Cow position:chr29:8589241-8588775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 174

               
               
               Conread position:261-711
               
               
               Cow position:chr29:24728804-24728339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:267-683
               
               
               Cow position:chr29:133470-133891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 11

               
               
               Conread position:268-711
               
               
               Cow position:chr29:15943845-15944298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 11

               
               
               Conread position:269-702
               
               
               Cow position:chr29:34734903-34734457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 43

               
               
               Conread position:269-750
               
               
               Cow position:chr29:7664497-7664000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 207

               
               
               Conread position:273-730
               
               
               Cow position:chr29:254331-254806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:282-722
               
               
               Cow position:chr29:17132331-17131876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 116

               
               
               Conread position:289-722
               
               
               Cow position:chr29:24578153-24578592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 75

               
               
               Conread position:297-711
               
               
               Cow position:chr29:13107641-13108067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 109

               
               
               Conread position:317-711
               
               
               Cow position:chr29:35112744-35112342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):155, 102

               
               
               Conread position:333-705
               
               
               Cow position:chr29:6925353-6925745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 225

               
               
               Conread position:356-711
               
               
               Cow position:chr29:23980319-23980689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:362-750
               
               
               Cow position:chr29:17117299-17117692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 125

               
               
               Conread position:367-718
               
               
               Cow position:chr29:23239884-23240248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 68

               
               
               Conread position:367-720
               
               
               Cow position:chr29:16609124-16609475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):192, 24

               
               
               Conread position:396-711
               
               
               Cow position:chr29:7866162-7865834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:405-711
               
               
               Cow position:chr29:3574957-3574638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:440-704
               
               
               Cow position:chr29:9717098-9717374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:462-705
               
               
               Cow position:chr29:45006146-45005893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 90

               
               
               Conread position:473-703
               
               
               Cow position:chr29:18749101-18748860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:493-705
               
               
               Cow position:chr29:10225530-10225303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 59

               
               
               Conread position:4-198
               
               
               Cow position:chr3:47087602-47087404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:258-716
               
               
               Cow position:chr3:63176748-63177223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:259-711
               
               
               Cow position:chr3:37009339-37008882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:261-705
               
               
               Cow position:chr3:35884707-35884252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:261-705
               
               
               Cow position:chr3:36874651-36874192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:261-711
               
               
               Cow position:chr3:11784769-11785226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:261-711
               
               
               Cow position:chr3:31422712-31422239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:261-711
               
               
               Cow position:chr3:56644921-56644455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:261-711
               
               
               Cow position:chr3:59864889-59865355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 410

               
               
               Conread position:261-739
               
               
               Cow position:chr3:4031157-4031651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 297

               
               
               Conread position:264-711
               
               
               Cow position:chr3:18246170-18245709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:264-711
               
               
               Cow position:chr3:64376303-64375844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:266-705
               
               
               Cow position:chr3:73936786-73936324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 291

               
               
               Conread position:268-711
               
               
               Cow position:chr3:579591-580055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 20

               
               
               Conread position:268-711
               
               
               Cow position:chr3:46683251-46683709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 188

               
               
               Conread position:269-706
               
               
               Cow position:chr3:19108980-19109440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 244

               
               
               Conread position:269-711
               
               
               Cow position:chr3:34392866-34392415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 288

               
               
               Conread position:269-741
               
               
               Cow position:chr3:15557201-15557700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:270-705
               
               
               Cow position:chr3:17937596-17937150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:273-707
               
               
               Cow position:chr3:38863117-38863546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:273-712
               
               
               Cow position:chr3:38346456-38346911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 287

               
               
               Conread position:286-702
               
               
               Cow position:chr3:33469230-33468802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:287-692
               
               
               Cow position:chr3:11819227-11819648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 124

               
               
               Conread position:287-711
               
               
               Cow position:chr3:13248584-13248145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 270

               
               
               Conread position:287-711
               
               
               Cow position:chr3:33269051-33268617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):150, 50

               
               
               Conread position:287-711
               
               
               Cow position:chr3:69930400-69929963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 308

               
               
               Conread position:293-711
               
               
               Cow position:chr3:1483465-1483897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 18

               
               
               Conread position:293-720
               
               
               Cow position:chr3:34556946-34556506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 27

               
               
               Conread position:295-710
               
               
               Cow position:chr3:63202674-63203102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 152

               
               
               Conread position:304-702
               
               
               Cow position:chr3:20452764-20453165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:307-711
               
               
               Cow position:chr3:26474441-26474864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:312-711
               
               
               Cow position:chr3:18670481-18670898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 233

               
               
               Conread position:325-711
               
               
               Cow position:chr3:30179389-30179791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):111, 232

               
               
               Conread position:333-711
               
               
               Cow position:chr3:18917417-18917807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 161

               
               
               Conread position:352-686
               
               
               Cow position:chr3:60891965-60892313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):84, 205

               
               
               Conread position:362-711
               
               
               Cow position:chr3:40568681-40568318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):74, 307

               
               
               Conread position:366-705
               
               
               Cow position:chr3:524481-524829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:366-705
               
               
               Cow position:chr3:55272678-55272339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:366-711
               
               
               Cow position:chr3:56976639-56976280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 181

               
               
               Conread position:374-711
               
               
               Cow position:chr3:15685545-15685203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:388-706
               
               
               Cow position:chr3:47758246-47758578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):48, 169

               
               
               Conread position:399-721
               
               
               Cow position:chr3:77496195-77496533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:413-704
               
               
               Cow position:chr3:68155875-68156181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:413-711
               
               
               Cow position:chr3:495889-495577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:413-718
               
               
               Cow position:chr3:19794125-19793805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:429-703
               
               
               Cow position:chr3:7562549-7562263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:429-711
               
               
               Cow position:chr3:25011713-25012007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:440-711
               
               
               Cow position:chr3:8240352-8240635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:457-711
               
               
               Cow position:chr3:20225599-20225863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 95

               
               
               Conread position:462-711
               
               
               Cow position:chr3:47987079-47987338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 90

               
               
               Conread position:478-706
               
               
               Cow position:chr3:50768139-50768377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:478-711
               
               
               Cow position:chr3:7280290-7280533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 81

               
               
               Conread position:481-722
               
               
               Cow position:chr3:45647123-45647374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:483-711
               
               
               Cow position:chr3:49218838-49218600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 6

               
               
               Conread position:569-738
               
               
               Cow position:chr3:54570191-54570364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:65-704
               
               
               Cow position:chr4:19255383-19256040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:255-711
               
               
               Cow position:chr4:43840773-43840301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 183

               
               
               Conread position:258-705
               
               
               Cow position:chr4:44901475-44901939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 456

               
               
               Conread position:259-705
               
               
               Cow position:chr4:34172316-34171852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 301

               
               
               Conread position:259-710
               
               
               Cow position:chr4:14230364-14229903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:259-711
               
               
               Cow position:chr4:34223146-34223615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 300

               
               
               Conread position:259-711
               
               
               Cow position:chr4:54931411-54930950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:260-705
               
               
               Cow position:chr4:8704025-8704488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:261-704
               
               
               Cow position:chr4:54110826-54111272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 12

               
               
               Conread position:261-711
               
               
               Cow position:chr4:13979257-13979721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:261-711
               
               
               Cow position:chr4:34713031-34713493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 354

               
               
               Conread position:261-750
               
               
               Cow position:chr4:31348952-31348447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:262-716
               
               
               Cow position:chr4:47730132-47730597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 301

               
               
               Conread position:268-711
               
               
               Cow position:chr4:5575403-5575846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 11

               
               
               Conread position:269-710
               
               
               Cow position:chr4:61625361-61624904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 112

               
               
               Conread position:270-705
               
               
               Cow position:chr4:22841621-22842067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:287-705
               
               
               Cow position:chr4:27539907-27540338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 74

               
               
               Conread position:287-706
               
               
               Cow position:chr4:46152191-46151754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:287-711
               
               
               Cow position:chr4:9375847-9375412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 123

               
               
               Conread position:287-713
               
               
               Cow position:chr4:50760837-50760391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 46

               
               
               Conread position:290-711
               
               
               Cow position:chr4:15119235-15119668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:307-736
               
               
               Cow position:chr4:67407791-67408242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:334-711
               
               
               Cow position:chr4:45644973-45644590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):131, 170

               
               
               Conread position:336-711
               
               
               Cow position:chr4:37553712-37553321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):104, 149

               
               
               Conread position:352-738
               
               
               Cow position:chr4:20298584-20298986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:362-711
               
               
               Cow position:chr4:8890564-8890201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 194

               
               
               Conread position:366-711
               
               
               Cow position:chr4:6034725-6034368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):62, 224

               
               
               Conread position:368-711
               
               
               Cow position:chr4:14737311-14737654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):239, 86

               
               
               Conread position:371-711
               
               
               Cow position:chr4:40410984-40410632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:380-705
               
               
               Cow position:chr4:61272238-61271912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:382-704
               
               
               Cow position:chr4:29035299-29035634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:402-711
               
               
               Cow position:chr4:12657662-12657977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 229

               
               
               Conread position:440-705
               
               
               Cow position:chr4:15668857-15668578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:440-706
               
               
               Cow position:chr4:18547130-18547407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:440-711
               
               
               Cow position:chr4:8414920-8414637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:441-711
               
               
               Cow position:chr4:23303870-23303588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:455-711
               
               
               Cow position:chr4:8413655-8413387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 100

               
               
               Conread position:462-704
               
               
               Cow position:chr4:26323207-26323458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:473-711
               
               
               Cow position:chr4:38973788-38974036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 79

               
               
               Conread position:495-711
               
               
               Cow position:chr4:47047238-47047463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 57

               
               
               Conread position:3-198
               
               
               Cow position:chr5:23686686-23686885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:259-704
               
               
               Cow position:chr5:59082902-59082443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:259-709
               
               
               Cow position:chr5:29968919-29969387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 301

               
               
               Conread position:259-711
               
               
               Cow position:chr5:32755139-32754656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr5:62436435-62436904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 14

               
               
               Conread position:259-716
               
               
               Cow position:chr5:6670867-6670396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 268

               
               
               Conread position:261-704
               
               
               Cow position:chr5:37377171-37377617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:261-711
               
               
               Cow position:chr5:42671716-42671272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:262-711
               
               
               Cow position:chr5:48026588-48027048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 21

               
               
               Conread position:262-711
               
               
               Cow position:chr5:64778681-64778225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 21

               
               
               Conread position:266-704
               
               
               Cow position:chr5:53834980-53835443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):46, 302

               
               
               Conread position:267-711
               
               
               Cow position:chr5:42668093-42667636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):19, 27

               
               
               Conread position:268-742
               
               
               Cow position:chr5:21828154-21828644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 289

               
               
               Conread position:270-707
               
               
               Cow position:chr5:34669770-34669318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:287-706
               
               
               Cow position:chr5:5106565-5106998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 124

               
               
               Conread position:287-706
               
               
               Cow position:chr5:31709642-31710067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):149, 24

               
               
               Conread position:287-711
               
               
               Cow position:chr5:34709111-34709548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 381

               
               
               Conread position:287-712
               
               
               Cow position:chr5:29255872-29255432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 270

               
               
               Conread position:287-712
               
               
               Cow position:chr5:57935777-57935356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 90

               
               
               Conread position:293-705
               
               
               Cow position:chr5:15722966-15722545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):170, 62

               
               
               Conread position:294-711
               
               
               Cow position:chr5:55684449-55684884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:305-721
               
               
               Cow position:chr5:65312311-65312737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:315-705
               
               
               Cow position:chr5:57584361-57584773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 148

               
               
               Conread position:315-711
               
               
               Cow position:chr5:3581923-3582335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):132, 95

               
               
               Conread position:326-711
               
               
               Cow position:chr5:9001982-9001591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):110, 231

               
               
               Conread position:353-705
               
               
               Cow position:chr5:28247560-28247926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):72, 204

               
               
               Conread position:353-711
               
               
               Cow position:chr5:41976440-41976089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:358-705
               
               
               Cow position:chr5:29904129-29903772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:367-711
               
               
               Cow position:chr5:23745382-23745025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 190

               
               
               Conread position:377-706
               
               
               Cow position:chr5:41331768-41332111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):58, 180

               
               
               Conread position:387-720
               
               
               Cow position:chr5:18573581-18573934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 347

               
               
               Conread position:430-721
               
               
               Cow position:chr5:52165715-52165413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:435-709
               
               
               Cow position:chr5:32140610-32140324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:439-705
               
               
               Cow position:chr5:54405423-54405144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:446-711
               
               
               Cow position:chr5:34506447-34506170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:455-711
               
               
               Cow position:chr5:26378178-26377908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:457-712
               
               
               Cow position:chr5:45846200-45845936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 96

               
               
               Conread position:461-711
               
               
               Cow position:chr5:27690570-27690307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 91

               
               
               Conread position:468-711
               
               
               Cow position:chr5:18287170-18287422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:473-704
               
               
               Cow position:chr5:64524373-64524130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:487-705
               
               
               Cow position:chr5:50443147-50442917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:497-718
               
               
               Cow position:chr5:47082680-47082915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:22-214
               
               
               Cow position:chr6:15921180-15920985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:39-711
               
               
               Cow position:chr6:48324-47635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):396, 451

               
               
               Conread position:259-711
               
               
               Cow position:chr6:16737325-16737791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 297

               
               
               Conread position:259-711
               
               
               Cow position:chr6:28112387-28111918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr6:39331082-39330612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr6:41192798-41193270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 416

               
               
               Conread position:259-711
               
               
               Cow position:chr6:45666483-45666020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:259-716
               
               
               Cow position:chr6:42564993-42565460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:260-711
               
               
               Cow position:chr6:16699587-16700032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:261-702
               
               
               Cow position:chr6:47574243-47574690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:261-712
               
               
               Cow position:chr6:55903542-55904004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 265

               
               
               Conread position:261-718
               
               
               Cow position:chr6:46283651-46283186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 298

               
               
               Conread position:262-702
               
               
               Cow position:chr6:47977392-47977841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):166, 11

               
               
               Conread position:262-711
               
               
               Cow position:chr6:3886046-3885586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:262-711
               
               
               Cow position:chr6:47039752-47039303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 21

               
               
               Conread position:264-711
               
               
               Cow position:chr6:65921298-65920839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 283

               
               
               Conread position:264-711
               
               
               Cow position:chr6:65930683-65931141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 23

               
               
               Conread position:273-711
               
               
               Cow position:chr6:6182262-6181806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:273-711
               
               
               Cow position:chr6:7175188-7174739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):137, 40

               
               
               Conread position:277-705
               
               
               Cow position:chr6:27887398-27887821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):159, 34

               
               
               Conread position:279-711
               
               
               Cow position:chr6:49444588-49445038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 220

               
               
               Conread position:283-711
               
               
               Cow position:chr6:40550225-40549781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:284-703
               
               
               Cow position:chr6:6721449-6721882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 89

               
               
               Conread position:287-706
               
               
               Cow position:chr6:51869418-51869849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 270

               
               
               Conread position:287-711
               
               
               Cow position:chr6:44146468-44146029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:288-711
               
               
               Cow position:chr6:25790235-25789817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):148, 52

               
               
               Conread position:289-711
               
               
               Cow position:chr6:49442448-49442860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:294-750
               
               
               Cow position:chr6:55141346-55140869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 253

               
               
               Conread position:297-704
               
               
               Cow position:chr6:50120442-50120022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 263

               
               
               Conread position:303-704
               
               
               Cow position:chr6:26914452-26914861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 131

               
               
               Conread position:305-711
               
               
               Cow position:chr6:14064289-14063888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):254, 87

               
               
               Conread position:316-716
               
               
               Cow position:chr6:32427633-32428025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):243, 120

               
               
               Conread position:318-712
               
               
               Cow position:chr6:42131464-42131050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 238

               
               
               Conread position:326-718
               
               
               Cow position:chr6:10332738-10332330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 279

               
               
               Conread position:336-705
               
               
               Cow position:chr6:4865153-4864774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:352-712
               
               
               Cow position:chr6:21590123-21590489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 305

               
               
               Conread position:354-711
               
               
               Cow position:chr6:27870158-27870530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 123

               
               
               Conread position:366-718
               
               
               Cow position:chr6:2012439-2012795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:372-711
               
               
               Cow position:chr6:55143701-55143354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:377-711
               
               
               Cow position:chr6:46465255-46465598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:413-705
               
               
               Cow position:chr6:19809139-19809443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:442-711
               
               
               Cow position:chr6:3719474-3719754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:446-748
               
               
               Cow position:chr6:30315633-30315315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 307

               
               
               Conread position:456-705
               
               
               Cow position:chr6:33865589-33865326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:458-705
               
               
               Cow position:chr6:60516235-60516492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:478-704
               
               
               Cow position:chr6:44098615-44098851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:485-711
               
               
               Cow position:chr6:1770659-1770425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:11-207
               
               
               Cow position:chr7:20824751-20824555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 5

               
               
               Conread position:257-705
               
               
               Cow position:chr7:51019108-51019562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 124

               
               
               Conread position:259-710
               
               
               Cow position:chr7:61824530-61824082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:259-711
               
               
               Cow position:chr7:9079686-9080147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:259-711
               
               
               Cow position:chr7:27394666-27395134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:259-718
               
               
               Cow position:chr7:65869959-65869483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 306

               
               
               Conread position:260-704
               
               
               Cow position:chr7:39325078-39325511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:260-722
               
               
               Cow position:chr7:34538142-34538622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 100

               
               
               Conread position:261-710
               
               
               Cow position:chr7:64236977-64236515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:261-711
               
               
               Cow position:chr7:1367149-1366683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 410

               
               
               Conread position:261-711
               
               
               Cow position:chr7:31349331-31349786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 367

               
               
               Conread position:261-711
               
               
               Cow position:chr7:39795408-39795870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:261-711
               
               
               Cow position:chr7:45945325-45944859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:262-706
               
               
               Cow position:chr7:33296742-33297197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 21

               
               
               Conread position:265-711
               
               
               Cow position:chr7:59660066-59660520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 98

               
               
               Conread position:266-722
               
               
               Cow position:chr7:52045316-52045784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:268-706
               
               
               Cow position:chr7:37507203-37506751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 289

               
               
               Conread position:269-711
               
               
               Cow position:chr7:58138278-58138733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 264

               
               
               Conread position:270-720
               
               
               Cow position:chr7:20536633-20537107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:279-706
               
               
               Cow position:chr7:33308678-33308239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:284-718
               
               
               Cow position:chr7:68777155-68776703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 282

               
               
               Conread position:285-702
               
               
               Cow position:chr7:10070372-10069939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 306

               
               
               Conread position:285-747
               
               
               Cow position:chr7:20246570-20247033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 264

               
               
               Conread position:287-710
               
               
               Cow position:chr7:8624597-8625034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:287-711
               
               
               Cow position:chr7:14539201-14539640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 276

               
               
               Conread position:293-704
               
               
               Cow position:chr7:51674545-51674120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 246

               
               
               Conread position:294-712
               
               
               Cow position:chr7:37024150-37024579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 9

               
               
               Conread position:297-705
               
               
               Cow position:chr7:50076372-50075953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):267, 142

               
               
               Conread position:303-750
               
               
               Cow position:chr7:26771214-26771680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):78, 262

               
               
               Conread position:315-718
               
               
               Cow position:chr7:63084929-63085344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):116, 215

               
               
               Conread position:318-705
               
               
               Cow position:chr7:48860134-48859736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):147, 23

               
               
               Conread position:325-710
               
               
               Cow position:chr7:6816826-6816427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 59

               
               
               Conread position:326-711
               
               
               Cow position:chr7:24804907-24804509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 166

               
               
               Conread position:334-711
               
               
               Cow position:chr7:38081551-38081931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:341-711
               
               
               Cow position:chr7:43489866-43490252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 330

               
               
               Conread position:352-711
               
               
               Cow position:chr7:33335520-33335894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 205

               
               
               Conread position:354-711
               
               
               Cow position:chr7:13854837-13855195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):205, 23

               
               
               Conread position:356-711
               
               
               Cow position:chr7:43064776-43065155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 210

               
               
               Conread position:358-705
               
               
               Cow position:chr7:52840469-52840114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 147

               
               
               Conread position:362-705
               
               
               Cow position:chr7:39939151-39939505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 195

               
               
               Conread position:368-711
               
               
               Cow position:chr7:24990697-24991055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:389-705
               
               
               Cow position:chr7:24989067-24989396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:389-705
               
               
               Cow position:chr7:25022479-25022150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:389-730
               
               
               Cow position:chr7:23090747-23091103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):76, 341

               
               
               Conread position:423-748
               
               
               Cow position:chr7:27557950-27557615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:438-738
               
               
               Cow position:chr7:14522941-14523253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):6, 73

               
               
               Conread position:439-711
               
               
               Cow position:chr7:19463074-19462790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 228

               
               
               Conread position:440-711
               
               
               Cow position:chr7:13645872-13645582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:455-711
               
               
               Cow position:chr7:32894748-32894481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:458-711
               
               
               Cow position:chr7:53361873-53361604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:462-711
               
               
               Cow position:chr7:34433763-34433507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:468-711
               
               
               Cow position:chr7:14766617-14766369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:473-711
               
               
               Cow position:chr7:10760335-10760087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:480-705
               
               
               Cow position:chr7:22345271-22345037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:480-706
               
               
               Cow position:chr7:19182363-19182598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:480-711
               
               
               Cow position:chr7:26632281-26632039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 200

               
               
               Conread position:521-722
               
               
               Cow position:chr7:40212913-40213121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:3-206
               
               
               Cow position:chr8:21205202-21205001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):143, 59

               
               
               Conread position:255-705
               
               
               Cow position:chr8:8987688-8987228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 93

               
               
               Conread position:256-711
               
               
               Cow position:chr8:18457461-18457920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:258-707
               
               
               Cow position:chr8:9671193-9671635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:259-711
               
               
               Cow position:chr8:33993442-33993909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 299

               
               
               Conread position:259-718
               
               
               Cow position:chr8:24868494-24868027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:259-718
               
               
               Cow position:chr8:32827820-32828293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 120

               
               
               Conread position:259-718
               
               
               Cow position:chr8:34662906-34663381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:260-738
               
               
               Cow position:chr8:54302256-54302745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 13

               
               
               Conread position:261-705
               
               
               Cow position:chr8:50958046-50957587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:261-706
               
               
               Cow position:chr8:2947461-2947001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 297

               
               
               Conread position:261-708
               
               
               Cow position:chr8:53421464-53421906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:261-710
               
               
               Cow position:chr8:12151054-12151525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 241

               
               
               Conread position:261-710
               
               
               Cow position:chr8:35529409-35529866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:261-711
               
               
               Cow position:chr8:24912316-24911852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 408

               
               
               Conread position:261-711
               
               
               Cow position:chr8:36632719-36632255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:261-711
               
               
               Cow position:chr8:45354778-45354312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 298

               
               
               Conread position:261-711
               
               
               Cow position:chr8:46843586-46843120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 410

               
               
               Conread position:261-722
               
               
               Cow position:chr8:47678721-47679196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 295

               
               
               Conread position:268-711
               
               
               Cow position:chr8:45070662-45071115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:269-705
               
               
               Cow position:chr8:33407549-33407097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 289

               
               
               Conread position:269-711
               
               
               Cow position:chr8:47138260-47138705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):71, 56

               
               
               Conread position:270-705
               
               
               Cow position:chr8:37432930-37433378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 287

               
               
               Conread position:270-711
               
               
               Cow position:chr8:8971263-8970816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:273-712
               
               
               Cow position:chr8:7607886-7607431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 286

               
               
               Conread position:279-705
               
               
               Cow position:chr8:32966869-32967305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 233

               
               
               Conread position:284-711
               
               
               Cow position:chr8:51045178-51044730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:285-708
               
               
               Cow position:chr8:42457009-42457442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 27

               
               
               Conread position:287-711
               
               
               Cow position:chr8:656371-655933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 382

               
               
               Conread position:287-711
               
               
               Cow position:chr8:41943053-41943492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 383

               
               
               Conread position:287-711
               
               
               Cow position:chr8:44113818-44114256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 382

               
               
               Conread position:288-711
               
               
               Cow position:chr8:10739818-10739381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 244

               
               
               Conread position:288-711
               
               
               Cow position:chr8:45830164-45830602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 10

               
               
               Conread position:304-711
               
               
               Cow position:chr8:1010915-1011326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 265

               
               
               Conread position:307-711
               
               
               Cow position:chr8:58856981-58857408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:308-711
               
               
               Cow position:chr8:47469304-47469725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):97, 76

               
               
               Conread position:311-711
               
               
               Cow position:chr8:22058887-22058466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:316-711
               
               
               Cow position:chr8:50988735-50988326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):120, 206

               
               
               Conread position:316-748
               
               
               Cow position:chr8:35584252-35583806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 241

               
               
               Conread position:335-705
               
               
               Cow position:chr8:59277884-59277498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):93, 228

               
               
               Conread position:351-711
               
               
               Cow position:chr8:16143488-16143867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:354-719
               
               
               Cow position:chr8:4129061-4128689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 188

               
               
               Conread position:358-696
               
               
               Cow position:chr8:4879260-4879592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:362-711
               
               
               Cow position:chr8:51880548-51880183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):74, 215

               
               
               Conread position:370-711
               
               
               Cow position:chr8:12453015-12453364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 271

               
               
               Conread position:375-711
               
               
               Cow position:chr8:5679308-5678964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 85

               
               
               Conread position:398-711
               
               
               Cow position:chr8:3704033-3704363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:446-710
               
               
               Cow position:chr8:47666362-47666089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:455-710
               
               
               Cow position:chr8:7620774-7620508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-718
               
               
               Cow position:chr8:43439064-43439334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 97

               
               
               Conread position:460-711
               
               
               Cow position:chr8:38862216-38861954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:462-711
               
               
               Cow position:chr8:20080610-20080351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):97, 90

               
               
               Conread position:462-711
               
               
               Cow position:chr8:58123802-58123547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:462-716
               
               
               Cow position:chr8:33814424-33814687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):102, 90

               
               
               Conread position:469-710
               
               
               Cow position:chr8:39182559-39182307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:470-711
               
               
               Cow position:chr8:5503082-5503339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:493-739
               
               
               Cow position:chr8:42794837-42794582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:498-704
               
               
               Cow position:chr8:19368140-19367924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:11-198
               
               
               Cow position:chr9:4283238-4283044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:252-706
               
               
               Cow position:chr9:60590159-60590627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 128

               
               
               Conread position:255-705
               
               
               Cow position:chr9:44920644-44921107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:258-711
               
               
               Cow position:chr9:13472205-13471748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:261-705
               
               
               Cow position:chr9:27038496-27038956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 410

               
               
               Conread position:261-705
               
               
               Cow position:chr9:34015791-34016253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:261-706
               
               
               Cow position:chr9:35225636-35225176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:261-712
               
               
               Cow position:chr9:22439749-22440206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 258

               
               
               Conread position:265-720
               
               
               Cow position:chr9:28025211-28025677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 12

               
               
               Conread position:269-704
               
               
               Cow position:chr9:22803260-22802820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 134

               
               
               Conread position:270-711
               
               
               Cow position:chr9:29184383-29184838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 287

               
               
               Conread position:285-711
               
               
               Cow position:chr9:9558719-9558279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 272

               
               
               Conread position:287-711
               
               
               Cow position:chr9:3756429-3755999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 44

               
               
               Conread position:287-711
               
               
               Cow position:chr9:32972776-32973214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 101

               
               
               Conread position:290-705
               
               
               Cow position:chr9:28773857-28773422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:351-711
               
               
               Cow position:chr9:31076997-31077379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 213

               
               
               Conread position:353-711
               
               
               Cow position:chr9:28657305-28656933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 237

               
               
               Conread position:362-711
               
               
               Cow position:chr9:25970011-25969645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):66, 196

               
               
               Conread position:381-704
               
               
               Cow position:chr9:23388033-23388373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 142

               
               
               Conread position:389-722
               
               
               Cow position:chr9:46316153-46316499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:425-726
               
               
               Cow position:chr9:25959054-25958738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:440-711
               
               
               Cow position:chr9:17579897-17579614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 227

               
               
               Conread position:446-707
               
               
               Cow position:chr9:198968-198697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:462-739
               
               
               Cow position:chr9:17309977-17310270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):102, 66

               
               
               Conread position:18-206
               
               
               Cow position:chrX:21643737-21643930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:252-711
               
               
               Cow position:chrX:6543546-6544013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 152

               
               
               Conread position:259-710
               
               
               Cow position:chrX:2524433-2523974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):177, 107

               
               
               Conread position:259-711
               
               
               Cow position:chrX:13057842-13058321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 305

               
               
               Conread position:259-711
               
               
               Cow position:chrX:22887949-22888415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:259-711
               
               
               Cow position:chrX:23572527-23572043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):21, 292

               
               
               Conread position:261-709
               
               
               Cow position:chrX:30180636-30180171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 411

               
               
               Conread position:261-711
               
               
               Cow position:chrX:18244272-18244746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:261-711
               
               
               Cow position:chrX:23969645-23970115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:309
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:261-711
               
               
               Cow position:chrX:25459347-25458880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:261-711
               
               
               Cow position:chrX:40224951-40224486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:261-738
               
               
               Cow position:chrX:2185533-2186011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 18

               
               
               Conread position:262-711
               
               
               Cow position:chrX:16702967-16703427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 19

               
               
               Conread position:268-748
               
               
               Cow position:chrX:24309808-24309328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 11

               
               
               Conread position:269-703
               
               
               Cow position:chrX:21592591-21593035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 94

               
               
               Conread position:269-705
               
               
               Cow position:chrX:31488816-31489263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:270-705
               
               
               Cow position:chrX:29049280-29049726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 160

               
               
               Conread position:280-728
               
               
               Cow position:chrX:35680656-35681108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 52

               
               
               Conread position:287-705
               
               
               Cow position:chrX:14908330-14908767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:287-711
               
               
               Cow position:chrX:7551483-7551038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:287-711
               
               
               Cow position:chrX:22811208-22811643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 56

               
               
               Conread position:287-711
               
               
               Cow position:chrX:38151006-38151445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 270

               
               
               Conread position:287-713
               
               
               Cow position:chrX:2932402-2931963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 270

               
               
               Conread position:288-703
               
               
               Cow position:chrX:13786063-13785629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 70

               
               
               Conread position:288-711
               
               
               Cow position:chrX:4326170-4325740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:288-711
               
               
               Cow position:chrX:16711275-16711711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 84

               
               
               Conread position:289-711
               
               
               Cow position:chrX:14162512-14162948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:293-711
               
               
               Cow position:chrX:28646658-28646228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):151, 269

               
               
               Conread position:294-634
               
               
               Cow position:chrX:28080116-28080456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):176, 63

               
               
               Conread position:304-711
               
               
               Cow position:chrX:41122407-41122829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:310-688
               
               
               Cow position:chrX:18711876-18712272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:315-748
               
               
               Cow position:chrX:33493076-33493526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 244

               
               
               Conread position:331-711
               
               
               Cow position:chrX:22538592-22538197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:334-705
               
               
               Cow position:chrX:32871421-32871035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 223

               
               
               Conread position:334-718
               
               
               Cow position:chrX:25575324-25575725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 223

               
               
               Conread position:346-704
               
               
               Cow position:chrX:28866604-28866239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:352-711
               
               
               Cow position:chrX:8782127-8782501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 205

               
               
               Conread position:366-711
               
               
               Cow position:chrX:14408053-14407693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 304

               
               
               Conread position:368-711
               
               
               Cow position:chrX:15120486-15120132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 177

               
               
               Conread position:374-711
               
               
               Cow position:chrX:20582437-20582787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 151

               
               
               Conread position:378-718
               
               
               Cow position:chrX:38438897-38439236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 139

               
               
               Conread position:378-722
               
               
               Cow position:chrX:17200196-17200570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 366

               
               
               Conread position:381-705
               
               
               Cow position:chrX:14884550-14884213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 176

               
               
               Conread position:387-720
               
               
               Cow position:chrX:42462332-42461983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 343

               
               
               Conread position:388-711
               
               
               Cow position:chrX:39757453-39757790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 6

               
               
               Conread position:398-706
               
               
               Cow position:chrX:5070056-5069737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:411-711
               
               
               Cow position:chrX:22568575-22568262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:421-711
               
               
               Cow position:chrX:9651590-9651288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 5

               
               
               Conread position:427-722
               
               
               Cow position:chrX:28993684-28993378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:429-711
               
               
               Cow position:chrX:20340427-20340134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:429-711
               
               
               Cow position:chrX:32144701-32144406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:440-711
               
               
               Cow position:chrX:12008206-12007925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:446-711
               
               
               Cow position:chrX:42470456-42470180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:455-704
               
               
               Cow position:chrX:30093875-30093614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 99

               
               
               Conread position:462-722
               
               
               Cow position:chrX:22115786-22115515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:464-712
               
               
               Cow position:chrX:35223802-35224060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:468-727
               
               
               Cow position:chrX:21862166-21861903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:469-705
               
               
               Cow position:chrX:12980842-12980596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:473-716
               
               
               Cow position:chrX:31745988-31745734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:480-711
               
               
               Cow position:chrX:37403507-37403266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:485-709
               
               
               Cow position:chrX:31385238-31385474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:505-711
               
               
               Cow position:chrX:27019746-27019960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 12