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Cow genome map

           
Conread name:
           
Lng1-LNG010007H08
        

               
Conread position:
               
2-267
               

               
Cow position:
               
chr1:80900122-80899847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
36, 239
               

               
Conread position:
               
3-132
               

               
Cow position:
               
chr1:56618649-56618778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-141
               

               
Cow position:
               
chr1:89448901-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr1:42175723-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:24445626-24445805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
124, 164
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:89497958-89497760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chr1:62920169-62919935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr1:85162546-85162790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr1:71253552-71253804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
125, 37
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr1:57635463-57635207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr1:68817796-68818056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 149
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr1:12595900-12596164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 148
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr1:37321997-37322267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 181
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr1:61564800-61564521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr1:71946369-71946643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr1:98551721-98551444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 197
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr1:1981112-1981388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr1:41004359-41004644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 219
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr1:63434805-63435080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr1:84255768-84255450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 266
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr1:58419937-58419600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr1:60032598-60032926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:5597208-5597398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:53671737-53671968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:53458698-53458428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
9-275
               

               
Cow position:
               
chr1:3061589-3061861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 253
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:102113115-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
15-252
               

               
Cow position:
               
chr1:81563726-81563487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 190
               

               
Conread position:
               
15-267
               

               
Cow position:
               
chr1:82337791-82338046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
116, 190
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr1:81472864-81472602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr1:51770074-51769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
18-283
               

               
Cow position:
               
chr1:74822433-74822173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
110, 8
               

               
Conread position:
               
19-205
               

               
Cow position:
               
chr1:4414222-4414407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
112, 145
               

               
Conread position:
               
19-224
               

               
Cow position:
               
chr1:69415726-69415936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
19-249
               

               
Cow position:
               
chr1:56643603-56643832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
20-198
               

               
Cow position:
               
chr1:83072423-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
20-249
               

               
Cow position:
               
chr1:71119502-71119268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 170
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr1:2765396-2765157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr1:29935402-29935641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
20-279
               

               
Cow position:
               
chr1:99807735-99807995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr1:53423664-53423432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
24-276
               

               
Cow position:
               
chr1:23488525-23488783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr1:56225448-56225201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
26-141
               

               
Cow position:
               
chr1:85301395-85301280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
26-248
               

               
Cow position:
               
chr1:7142868-7143091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 127
               

               
Conread position:
               
26-249
               

               
Cow position:
               
chr1:78791327-78791550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
26-276
               

               
Cow position:
               
chr1:71796935-71797170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
30-249
               

               
Cow position:
               
chr1:51836545-51836328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
30-253
               

               
Cow position:
               
chr1:25793460-25793687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
34-266
               

               
Cow position:
               
chr1:74084224-74084449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
2-148
               

               
Cow position:
               
chr10:5264792-5264645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
3-129
               

               
Cow position:
               
chr10:6543697-6543568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr10:2613340-2613174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr10:40163962-40164165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr10:29252139-29251908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr10:35791904-35791673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr10:23506516-23506768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr10:42745889-42745628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr10:34607533-34607254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr10:20447068-20446793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr10:19678845-19678560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr10:20095732-20095448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 226
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr10:22520190-22520472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr10:34655139-34655419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 147
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr10:67443133-67443414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 168
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr10:15462463-15462179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 150
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr10:24971639-24971914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr10:37415759-37415546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
6-264
               

               
Cow position:
               
chr10:10148624-10148359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
29, 201
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr10:30523094-30523364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 149
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr10:64437894-64437635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr10:37913222-37913484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
12-284
               

               
Cow position:
               
chr10:21657385-21657115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr10:24786065-24785813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
14-286
               

               
Cow position:
               
chr10:15294324-15294050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
112, 10
               

               
Conread position:
               
15-306
               

               
Cow position:
               
chr10:30360480-30360200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
16-286
               

               
Cow position:
               
chr10:21422202-21422465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 19
               

               
Conread position:
               
16-309
               

               
Cow position:
               
chr10:40906273-40905977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr10:35796371-35796635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
18-276
               

               
Cow position:
               
chr10:2394510-2394763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
19-148
               

               
Cow position:
               
chr10:37295707-37295838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
20-260
               

               
Cow position:
               
chr10:10963941-10963711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
20-291
               

               
Cow position:
               
chr10:38725613-38725347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr10:31362254-31362510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
24-235
               

               
Cow position:
               
chr10:67020578-67020367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
25-276
               

               
Cow position:
               
chr10:25479052-25478806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 148
               

               
Conread position:
               
26-252
               

               
Cow position:
               
chr10:28038986-28039208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 151
               

               
Conread position:
               
27-294
               

               
Cow position:
               
chr10:21447958-21448215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
243, 61
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr10:11032548-11032775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 141
               

               
Conread position:
               
33-227
               

               
Cow position:
               
chr10:50558985-50559179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
98, 133
               

               
Conread position:
               
33-237
               

               
Cow position:
               
chr10:318753-318956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr11:34646567-34646406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr11:29960276-29960080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr11:81162455-81162714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr11:2092314-2092049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr11:44234333-44234059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 100
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr11:955345-955062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr11:25387044-25386768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr11:30120690-30120965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
228, 21
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr11:48272178-48271893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 257
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr11:43914193-43913918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
24, 131
               

               
Conread position:
               
4-125
               

               
Cow position:
               
chr11:69075888-69075764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr11:20238653-20238421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
28, 146
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr11:62045373-62045129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 141
               

               
Conread position:
               
9-237
               

               
Cow position:
               
chr11:26117748-26117974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
225, 98
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr11:10620357-10620611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr11:16251272-16251552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr11:65762632-65762814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
12-245
               

               
Cow position:
               
chr11:34121163-34120929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
13-215
               

               
Cow position:
               
chr11:35668747-35668953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
14-269
               

               
Cow position:
               
chr11:12949980-12950229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
15-283
               

               
Cow position:
               
chr11:76206356-76206088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
133, 98
               

               
Conread position:
               
16-276
               

               
Cow position:
               
chr11:63156943-63157209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 253
               

               
Conread position:
               
16-278
               

               
Cow position:
               
chr11:15125017-15125276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
17-276
               

               
Cow position:
               
chr11:952231-951973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chr11:64334816-64334555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
19-224
               

               
Cow position:
               
chr11:47899240-47899033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr11:67747245-67746975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 7
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr11:52297260-52297526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr11:64044203-64043946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chr11:73512478-73512722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr11:50778328-50778082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr11:10095300-10095040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
30-252
               

               
Cow position:
               
chr11:75355559-75355338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
31-251
               

               
Cow position:
               
chr11:34032252-34032466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
81, 119
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr11:59370961-59370749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
33-249
               

               
Cow position:
               
chr11:24937611-24937394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 79
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr11:40818690-40818947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 134
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr12:26223029-26223273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr12:30476439-30476239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr12:45820409-45820663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr12:11056832-11056559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr12:5631922-5632196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr12:18577796-18577524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr12:25561327-25561027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr12:28471593-28471399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 159
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr12:33458091-33457843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 151
               

               
Conread position:
               
16-271
               

               
Cow position:
               
chr12:18518611-18518361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
19-306
               

               
Cow position:
               
chr12:18123620-18123343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr12:16851068-16851366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
25-306
               

               
Cow position:
               
chr12:7205679-7205948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr12:18417500-18417278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr13:28652790-28652959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
3-155
               

               
Cow position:
               
chr13:17966218-17966064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr13:8374783-8374626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr13:43480047-43480290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr13:24369571-24369817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr13:17114389-17114142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr13:55316201-55315945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
25, 164
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr13:37818764-37818511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
18, 153
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr13:20784580-20784842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr13:10929003-10928728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr13:22085756-22085495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr13:15041483-15041207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr13:20864026-20863756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr13:20684132-20683855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 161
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr13:15958610-15958890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 142
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr13:41806762-41807044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 204
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr13:54702176-54702471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 217
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr13:23856201-23856466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 201
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr13:3701430-3701699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
126, 141
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr13:23667248-23667497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr13:9906731-9907001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr13:25817522-25817778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr13:31813873-31814136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
14-282
               

               
Cow position:
               
chr13:17886510-17886765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 8
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr13:29630863-29631104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
21-148
               

               
Cow position:
               
chr13:20288337-20288466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
21-272
               

               
Cow position:
               
chr13:53573979-53574216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chr13:55843488-55843753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
25-266
               

               
Cow position:
               
chr13:4664854-4664609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
106, 88
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr13:9665073-9665327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
30-252
               

               
Cow position:
               
chr13:8607501-8607281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
120, 62
               

               
Conread position:
               
30-264
               

               
Cow position:
               
chr13:35659770-35660003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
285-853
               

               
Cow position:
               
chr13:15686652-15687219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 41
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr14:34355648-34355421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 130
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr14:48447115-48446878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr14:37131700-37131954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr14:5365928-5366199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr14:26116108-26116412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr14:26620663-26620969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 259
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr14:10912918-10912686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr14:25385826-25385580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
15-264
               

               
Cow position:
               
chr14:33714616-33714380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
15-268
               

               
Cow position:
               
chr14:27305213-27305472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr14:3437056-3437275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chr14:28090914-28090648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
17-310
               

               
Cow position:
               
chr14:35700484-35700788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 282
               

               
Conread position:
               
19-164
               

               
Cow position:
               
chr14:36254643-36254495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
20-252
               

               
Cow position:
               
chr14:35712116-35711884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chr14:10906780-10907046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chr14:21018176-21018440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
22-264
               

               
Cow position:
               
chr14:18657539-18657292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 167
               

               
Conread position:
               
26-267
               

               
Cow position:
               
chr14:26108704-26108951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr14:39778826-39779080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
28-295
               

               
Cow position:
               
chr14:46965631-46965900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
112, 106
               

               
Conread position:
               
29-229
               

               
Cow position:
               
chr14:39918686-39918490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
30-252
               

               
Cow position:
               
chr14:12614020-12613807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
30-276
               

               
Cow position:
               
chr14:8495226-8495473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 131
               

               
Conread position:
               
30-282
               

               
Cow position:
               
chr14:41756333-41756584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
87, 94
               

               
Conread position:
               
34-282
               

               
Cow position:
               
chr14:12546508-12546263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 77
               

               
Conread position:
               
36-148
               

               
Cow position:
               
chr14:15492676-15492790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr15:31137372-31137174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr15:11011509-11011252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr15:23487074-23486800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr15:28126952-28126676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
109, 32
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr15:33306203-33306479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr15:26404377-26404642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
124, 59
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr15:37931656-37931415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
15-326
               

               
Cow position:
               
chr15:26079254-26078958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
216, 9
               

               
Conread position:
               
16-266
               

               
Cow position:
               
chr15:23791564-23791813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
19-276
               

               
Cow position:
               
chr15:22532348-22532607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
20-276
               

               
Cow position:
               
chr15:26421489-26421233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
82, 72
               

               
Conread position:
               
20-282
               

               
Cow position:
               
chr15:20391163-20390918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
26-246
               

               
Cow position:
               
chr15:47821926-47822135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 79
               

               
Conread position:
               
28-180
               

               
Cow position:
               
chr15:22871724-22871880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
30-241
               

               
Cow position:
               
chr15:10456892-10456682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
95, 148
               

               
Conread position:
               
30-266
               

               
Cow position:
               
chr15:43248651-43248415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 140
               

               
Conread position:
               
30-267
               

               
Cow position:
               
chr15:46868591-46868355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
100, 134
               

               
Conread position:
               
30-276
               

               
Cow position:
               
chr15:20117231-20117476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
33-198
               

               
Cow position:
               
chr15:7456821-7456985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 132
               

               
Conread position:
               
3-121
               

               
Cow position:
               
chr16:9905086-9904970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr16:25386973-25386817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr16:33704804-33704552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr16:44973490-44973243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr16:4059352-4059094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr16:37669741-37669994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr16:48006497-48006757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr16:18679194-18678914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr16:13689662-13689379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 144
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr16:40562228-40561942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr16:45139667-45139384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 189
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr16:24855537-24855344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr16:48398260-48398526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr16:4875983-4875763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 140
               

               
Conread position:
               
17-249
               

               
Cow position:
               
chr16:48493159-48492936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
19-235
               

               
Cow position:
               
chr16:41608593-41608372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
20-276
               

               
Cow position:
               
chr16:54579144-54578892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
106, 44
               

               
Conread position:
               
21-249
               

               
Cow position:
               
chr16:13969395-13969629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
24-255
               

               
Cow position:
               
chr16:51069943-51070185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 161
               

               
Conread position:
               
24-330
               

               
Cow position:
               
chr16:13068647-13068948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
93, 100
               

               
Conread position:
               
25-266
               

               
Cow position:
               
chr16:38708857-38709093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 124
               

               
Conread position:
               
26-201
               

               
Cow position:
               
chr16:7785116-7784937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
28-282
               

               
Cow position:
               
chr16:32970108-32970351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
99, 121
               

               
Conread position:
               
30-276
               

               
Cow position:
               
chr16:53627459-53627700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
94, 119
               

               
Conread position:
               
33-152
               

               
Cow position:
               
chr16:12320185-12320065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
33-267
               

               
Cow position:
               
chr16:5363861-5363623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
33-267
               

               
Cow position:
               
chr16:5636551-5636321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr16:49141599-49141842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 112
               

               
Conread position:
               
34-263
               

               
Cow position:
               
chr16:11102858-11103090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr16:45609955-45609702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr16:10352834-10352669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
3-140
               

               
Cow position:
               
chr17:32009404-32009540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
3-149
               

               
Cow position:
               
chr17:1040781-1040634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr17:31037341-31037538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 151
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr17:26881295-26881532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr17:38647097-38646859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr17:1035561-1035814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 134
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr17:33122128-33121876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr17:33288621-33288893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr17:9854020-9853744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr17:38614996-38614714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr17:18109048-18109329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 164
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr17:32993587-32993856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr17:10473869-10473592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 206
               

               
Conread position:
               
9-228
               

               
Cow position:
               
chr17:908771-908558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr17:4601516-4601786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 53
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr17:7810717-7810951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr17:24973979-24973707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr17:40331796-40331526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
11-286
               

               
Cow position:
               
chr17:41399944-41400215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
15-250
               

               
Cow position:
               
chr17:27429599-27429368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
17-263
               

               
Cow position:
               
chr17:8926193-8926443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 77
               

               
Conread position:
               
19-235
               

               
Cow position:
               
chr17:21207111-21207330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
20-286
               

               
Cow position:
               
chr17:25755812-25755538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
21-280
               

               
Cow position:
               
chr17:44146954-44147212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
24-306
               

               
Cow position:
               
chr17:20234244-20233962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
94, 157
               

               
Conread position:
               
25-191
               

               
Cow position:
               
chr17:3467773-3467618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
26-205
               

               
Cow position:
               
chr17:10510645-10510827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
28-267
               

               
Cow position:
               
chr17:27819314-27819075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 76
               

               
Conread position:
               
30-235
               

               
Cow position:
               
chr17:26000126-25999921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 114
               

               
Conread position:
               
30-245
               

               
Cow position:
               
chr17:41892056-41892276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
101, 83
               

               
Conread position:
               
30-267
               

               
Cow position:
               
chr17:8279699-8279935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr17:21680774-21680525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr17:25541813-25542055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 47
               

               
Conread position:
               
33-268
               

               
Cow position:
               
chr17:21017803-21017566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 72
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr18:33008025-33007819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr18:10904812-10904549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr18:11684944-11684686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr18:29058532-29058804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr18:10576067-10575796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr18:18562574-18562854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr18:33407578-33407326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 231
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr18:11166942-11166682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
114, 148
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr18:9365880-9365600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
7-306
               

               
Cow position:
               
chr18:5487203-5486913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr18:25206231-25206492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 154
               

               
Conread position:
               
12-306
               

               
Cow position:
               
chr18:4323510-4323213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 279
               

               
Conread position:
               
15-283
               

               
Cow position:
               
chr18:32121112-32121377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
17-279
               

               
Cow position:
               
chr18:18627375-18627639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
19-200
               

               
Cow position:
               
chr18:33896484-33896656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
19-205
               

               
Cow position:
               
chr18:17391037-17391212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
20-322
               

               
Cow position:
               
chr18:50566819-50566520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
21-252
               

               
Cow position:
               
chr18:21176132-21175895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
24-264
               

               
Cow position:
               
chr18:23807930-23808170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
26-292
               

               
Cow position:
               
chr18:48290502-48290763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
29-144
               

               
Cow position:
               
chr18:21740872-21740990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
30-210
               

               
Cow position:
               
chr18:3018142-3018322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
30-247
               

               
Cow position:
               
chr18:34325017-34325238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 207
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr18:13293445-13293200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr18:28101565-28101314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
34-266
               

               
Cow position:
               
chr18:22275103-22275334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 130
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr18:44262557-44262303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 198
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr19:24759898-24760078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr19:55688715-55688919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr19:10186481-10186242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr19:33823303-33823045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr19:24145002-24144739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr19:32955871-32955598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr19:9541915-9542188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr19:16567138-16566864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr19:18786337-18786620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr19:23786178-23785893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chr19:7668686-7668367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr19:20984790-20984996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
127, 96
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr19:47187072-47187298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
108, 59
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr19:38392788-38392480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 290
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr19:15068026-15068289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
9-199
               

               
Cow position:
               
chr19:38723867-38724061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 153
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr19:35457637-35457455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
12-282
               

               
Cow position:
               
chr19:20661437-20661711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr19:30533909-30533647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
18-252
               

               
Cow position:
               
chr19:35782160-35782396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr19:39751446-39751190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr19:16096589-16096847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 64
               

               
Conread position:
               
20-314
               

               
Cow position:
               
chr19:33306276-33305975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 271
               

               
Conread position:
               
24-247
               

               
Cow position:
               
chr19:6880911-6881137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 200
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr19:5656151-5656405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 66
               

               
Conread position:
               
25-283
               

               
Cow position:
               
chr19:52773217-52773471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
26-249
               

               
Cow position:
               
chr19:48722991-48722765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 217
               

               
Conread position:
               
26-276
               

               
Cow position:
               
chr19:8496335-8496591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr19:19673376-19673124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 127
               

               
Conread position:
               
27-252
               

               
Cow position:
               
chr19:19924639-19924860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 192
               

               
Conread position:
               
30-129
               

               
Cow position:
               
chr19:52158491-52158393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
30-280
               

               
Cow position:
               
chr19:56383096-56382856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr19:28921781-28921536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
33-231
               

               
Cow position:
               
chr19:23244566-23244763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
97, 118
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr2:51406665-51406411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr2:80865858-80866005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr2:30144714-30144552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr2:19328543-19328365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 149
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr2:1638600-1638400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr2:38362369-38362594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr2:46020901-46020676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr2:68716672-68716901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
29, 149
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr2:38628905-38628659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 148
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr2:1658492-1658247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr2:21003170-21002935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr2:79962-80226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr2:192470-192727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
112, 85
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr2:55877384-55877124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr2:50278021-50277739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
109, 85
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr2:80324856-80325130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr2:14089789-14089475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr2:45912636-45912943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 142
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr2:64212560-64212863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 245
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr2:44170555-44170211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr2:44051306-44051093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr2:72183497-72183723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr2:13604464-13604230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr2:54654619-54654895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr2:43994930-43994651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr2:13684687-13684454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
11-266
               

               
Cow position:
               
chr2:41248555-41248302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
120, 147
               

               
Conread position:
               
11-330
               

               
Cow position:
               
chr2:39855776-39855454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr2:17185427-17185702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr2:14555766-14555999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
14-339
               

               
Cow position:
               
chr2:9173290-9173595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chr2:42936232-42936426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 85
               

               
Conread position:
               
23-298
               

               
Cow position:
               
chr2:42599908-42599628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 210
               

               
Conread position:
               
24-241
               

               
Cow position:
               
chr2:50400401-50400178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr2:42309579-42309806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
25-224
               

               
Cow position:
               
chr2:1651379-1651179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
25-282
               

               
Cow position:
               
chr2:43773602-43773857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
78, 181
               

               
Conread position:
               
26-240
               

               
Cow position:
               
chr2:25597521-25597733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 113
               

               
Conread position:
               
26-276
               

               
Cow position:
               
chr2:2589978-2590220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
28-282
               

               
Cow position:
               
chr2:70579735-70579993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
63, 232
               

               
Conread position:
               
29-229
               

               
Cow position:
               
chr2:19597767-19597564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
29-282
               

               
Cow position:
               
chr2:5297717-5297457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr2:17341546-17341291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 139
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr2:32115047-32114782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr2:39597261-39597019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 57
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr2:70704221-70703971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 186
               

               
Conread position:
               
37-283
               

               
Cow position:
               
chr2:28820325-28820081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 114
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr20:32463482-32463640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr20:25162088-25162253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr20:36010834-36010639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr20:36207846-36207615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr20:5826982-5826716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr20:26996568-26996311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr20:3606922-3607188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr20:19363324-19363603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr20:27340101-27339822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr20:20203256-20202962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 150
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr20:24069844-24069552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr20:11550406-11550129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
12-235
               

               
Cow position:
               
chr20:11542255-11542476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 18
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr20:21019587-21019302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
24-267
               

               
Cow position:
               
chr20:15073818-15074057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
107, 66
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr20:6096477-6096726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
7, 116
               

               
Conread position:
               
29-163
               

               
Cow position:
               
chr20:35407875-35407738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
29-266
               

               
Cow position:
               
chr20:18618647-18618415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
30-277
               

               
Cow position:
               
chr20:18320780-18321032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
30-279
               

               
Cow position:
               
chr20:10200354-10200104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
30-316
               

               
Cow position:
               
chr20:5998661-5998940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 61
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr21:44214185-44214039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
3-152
               

               
Cow position:
               
chr21:45906563-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr21:17856603-17856408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr21:29978701-29978899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
128, 88
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr21:8549741-8549477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr21:29485041-29484780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:6834108-6833832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:16187748-16188016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:19196105-19196388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:23192453-23192738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:29069268-29069548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:36297552-36297259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 241
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr21:724825-725112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 269
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr21:42170693-42170407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr21:24858374-24858069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr21:33982748-33983052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 23
               

               
Conread position:
               
3-729
               

               
Cow position:
               
chr21:41621184-41620452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:44515322-44515073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr21:22856279-22855999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr21:46264225-46263955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
19-189
               

               
Cow position:
               
chr21:27810454-27810278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
25-283
               

               
Cow position:
               
chr21:7132431-7132682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 8
               

               
Conread position:
               
29-260
               

               
Cow position:
               
chr21:11644937-11645166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 105
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr21:28997868-28998127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
35-306
               

               
Cow position:
               
chr21:10882466-10882184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 267
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr22:27292083-27291851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr22:18021040-18021301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr22:9977803-9977534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr22:21567989-21567717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 151
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr22:4017469-4017188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr22:13011277-13011564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr22:22160718-22160434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr22:26141269-26141023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 231
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr22:26097628-26097896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr22:3987507-3987225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr22:10631376-10631088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 236
               

               
Conread position:
               
11-229
               

               
Cow position:
               
chr22:14118961-14118741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr22:5337620-5337885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
15-279
               

               
Cow position:
               
chr22:8877251-8876988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
15-281
               

               
Cow position:
               
chr22:11257767-11258023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chr22:33917920-33918121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr22:8418445-8418181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr22:43397988-43397732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
20-249
               

               
Cow position:
               
chr22:22997454-22997225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
20-252
               

               
Cow position:
               
chr22:19653010-19653237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
20-258
               

               
Cow position:
               
chr22:24066260-24066497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chr22:6622271-6622532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr22:19738601-19738857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 199
               

               
Conread position:
               
25-274
               

               
Cow position:
               
chr22:5042290-5042041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
33-267
               

               
Cow position:
               
chr22:40048515-40048292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr23:21502639-21502787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr23:24809665-24809819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr23:21764918-21764720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr23:29034316-29034065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr23:1883392-1883115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr23:24867307-24867024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
6-225
               

               
Cow position:
               
chr23:29801428-29801208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr23:17404831-17404587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 141
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr23:1009410-1009682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
12-266
               

               
Cow position:
               
chr23:39806857-39806609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
14-241
               

               
Cow position:
               
chr23:40891345-40891122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
114, 7
               

               
Conread position:
               
16-276
               

               
Cow position:
               
chr23:16237268-16237537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
19-162
               

               
Cow position:
               
chr23:7361098-7360953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
19-242
               

               
Cow position:
               
chr23:36075837-36076062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
27-340
               

               
Cow position:
               
chr23:20752987-20752674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
28-160
               

               
Cow position:
               
chr23:19774746-19774611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
28-276
               

               
Cow position:
               
chr23:41285889-41285654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
30-272
               

               
Cow position:
               
chr23:3745579-3745334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
87, 75
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr23:18322445-18322701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
82, 204
               

               
Conread position:
               
34-252
               

               
Cow position:
               
chr23:809134-808911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr24:27052522-27052801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
109, 148
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr24:30897565-30897735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr24:6487890-6487671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr24:24250702-24250458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 149
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr24:29180861-29180571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 157
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr24:16556667-16556925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr24:33153742-33153481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
14-226
               

               
Cow position:
               
chr24:27054367-27054149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
15-238
               

               
Cow position:
               
chr24:39226956-39226735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
16-148
               

               
Cow position:
               
chr24:37037854-37037723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
16-253
               

               
Cow position:
               
chr24:1269749-1269526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
16-259
               

               
Cow position:
               
chr24:25885204-25885442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
24-266
               

               
Cow position:
               
chr24:23685120-23685352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
98, 59
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr24:41006802-41006540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 212
               

               
Conread position:
               
26-176
               

               
Cow position:
               
chr24:6131928-6132078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
29-264
               

               
Cow position:
               
chr24:29170914-29170676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
33-228
               

               
Cow position:
               
chr24:10499153-10498955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr25:35333152-35333004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr25:26679219-26679065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr25:23245009-23245185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 146
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr25:12899752-12899536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 204
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr25:12081327-12081584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 144
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr25:36081870-36081600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 230
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr25:21191482-21191208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr25:33959260-33959546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 201
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr25:40388471-40388742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr25:25051386-25051692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 140
               

               
Conread position:
               
14-241
               

               
Cow position:
               
chr25:2136337-2136108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
15-266
               

               
Cow position:
               
chr25:10012066-10012318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
19-252
               

               
Cow position:
               
chr25:32191648-32191416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
25-249
               

               
Cow position:
               
chr25:14467108-14467334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
66, 188
               

               
Conread position:
               
30-276
               

               
Cow position:
               
chr25:27504211-27504464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 150
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr25:23829164-23829400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
32-135
               

               
Cow position:
               
chr25:14157585-14157483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
3-155
               

               
Cow position:
               
chr26:12964682-12964839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr26:8896869-8897204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 292
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr26:16783835-16783574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr26:9491937-9491665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr26:26888123-26888396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
6-164
               

               
Cow position:
               
chr26:647714-647868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr26:31605416-31605188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
19-153
               

               
Cow position:
               
chr26:31572245-31572112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
19-267
               

               
Cow position:
               
chr26:9867122-9867365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
19-276
               

               
Cow position:
               
chr26:12155122-12155371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
21-243
               

               
Cow position:
               
chr26:21992098-21991885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
21-247
               

               
Cow position:
               
chr26:9666414-9666638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 90
               

               
Conread position:
               
33-247
               

               
Cow position:
               
chr26:28760111-28760317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
34-184
               

               
Cow position:
               
chr26:28251131-28250976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 115
               

               
Conread position:
               
34-276
               

               
Cow position:
               
chr26:16549966-16549720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
3-129
               

               
Cow position:
               
chr27:23510948-23511077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr27:31148722-31148868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr27:16625858-16626010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr27:16103768-16103936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr27:15409075-15408872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr27:4819744-4819489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr27:20549748-20549469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr27:1122992-1123254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr27:22035416-22035133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr27:20789417-20789240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr27:4672978-4673249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
9-144
               

               
Cow position:
               
chr27:22386835-22386974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr27:26426174-26426367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr27:20553691-20553933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr27:23576571-23576303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
143, 21
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr27:16871942-16871710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr27:17397480-17397240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr27:6541608-6541865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
25-161
               

               
Cow position:
               
chr27:22569760-22569892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 8
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr27:27550758-27550566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 83
               

               
Conread position:
               
27-229
               

               
Cow position:
               
chr27:31499048-31499254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
64, 145
               

               
Conread position:
               
29-233
               

               
Cow position:
               
chr27:26151010-26151210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
32-253
               

               
Cow position:
               
chr27:22547418-22547196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
99, 201
               

               
Conread position:
               
3-125
               

               
Cow position:
               
chr28:11079308-11079185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr28:26220258-26220021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
28, 144
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr28:21502392-21502151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr28:24966387-24966111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr28:11752139-11752423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr28:21844958-21844678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr28:5437086-5437301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chr28:23621544-23621289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr28:23772299-23772547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 174
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr28:10533938-10534207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
12-239
               

               
Cow position:
               
chr28:11884528-11884757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
17-258
               

               
Cow position:
               
chr28:25596616-25596379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
19-279
               

               
Cow position:
               
chr28:13474286-13474034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
20-276
               

               
Cow position:
               
chr28:5128748-5128998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 44
               

               
Conread position:
               
24-249
               

               
Cow position:
               
chr28:14649329-14649103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
26-155
               

               
Cow position:
               
chr28:24082240-24082116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr28:19295382-19295640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
124, 104
               

               
Conread position:
               
30-214
               

               
Cow position:
               
chr28:4884290-4884476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr28:30978247-30978005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
34-282
               

               
Cow position:
               
chr28:14998034-14997787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 175
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr29:31674626-31674465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr29:5186500-5186680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr29:20626562-20626292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
12-148
               

               
Cow position:
               
chr29:29314672-29314808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
17-276
               

               
Cow position:
               
chr29:35630431-35630694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr29:28195538-28195797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
24-229
               

               
Cow position:
               
chr29:43496022-43495828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
24-282
               

               
Cow position:
               
chr29:17795398-17795136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
29-257
               

               
Cow position:
               
chr29:11071730-11071963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 193
               

               
Conread position:
               
30-266
               

               
Cow position:
               
chr29:32655466-32655692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
33-246
               

               
Cow position:
               
chr29:18735677-18735891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr3:56612332-56612132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 185
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr3:80564938-80564687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
36, 180
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr3:81277727-81277980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr3:10347325-10347075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr3:10958269-10958529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr3:2396808-2397090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 59
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr3:12711944-12712230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr3:59799219-59798947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
124, 143
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr3:70565767-70566045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr3:15057640-15057889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr3:26219081-26219364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 93
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr3:55272075-55272347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 141
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr3:49793364-49793121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr3:2674994-2674722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 141
               

               
Conread position:
               
14-151
               

               
Cow position:
               
chr3:26874552-26874412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr3:53588428-53588692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
20-252
               

               
Cow position:
               
chr3:26065957-26065725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
21-267
               

               
Cow position:
               
chr3:54862461-54862715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
71, 153
               

               
Conread position:
               
22-238
               

               
Cow position:
               
chr3:75080720-75080504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
24-272
               

               
Cow position:
               
chr3:27532706-27532959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr3:82657134-82657392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 93
               

               
Conread position:
               
26-276
               

               
Cow position:
               
chr3:54960137-54959891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
30-253
               

               
Cow position:
               
chr3:38864060-38863836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
101, 117
               

               
Conread position:
               
30-263
               

               
Cow position:
               
chr3:30418074-30417842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 123
               

               
Conread position:
               
30-272
               

               
Cow position:
               
chr3:66116166-66116407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
30-298
               

               
Cow position:
               
chr3:12255422-12255159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
31-234
               

               
Cow position:
               
chr3:54881704-54881498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 142
               

               
Conread position:
               
31-306
               

               
Cow position:
               
chr3:48811049-48811314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
32-210
               

               
Cow position:
               
chr3:68156677-68156496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
33-252
               

               
Cow position:
               
chr3:68627745-68627951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
91, 50
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr3:30180022-30179777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
3-129
               

               
Cow position:
               
chr4:21874163-21874036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
3-139
               

               
Cow position:
               
chr4:47047883-47047743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr4:11332081-11331875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 180
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr4:38935347-38935145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr4:19463484-19463255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr4:26746471-26746224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 129
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr4:19438453-19438184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 163
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr4:16799198-16799474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 133
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr4:48152383-48152656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr4:51898997-51898715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr4:12903808-12903528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 133
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr4:53100789-53100516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr4:38952541-38952246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr4:34641740-34641989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr4:9815365-9815636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr4:23311281-23311551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 209
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr4:46526970-46526708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 13
               

               
Conread position:
               
19-229
               

               
Cow position:
               
chr4:25356336-25356543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
131, 14
               

               
Conread position:
               
20-249
               

               
Cow position:
               
chr4:38181651-38181424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
20-252
               

               
Cow position:
               
chr4:31172647-31172406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
20-282
               

               
Cow position:
               
chr4:2610200-2609948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr4:243200-242915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
12, 213
               

               
Conread position:
               
21-246
               

               
Cow position:
               
chr4:35870173-35869961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr4:23600149-23599886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chr4:54937856-54937597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
30-267
               

               
Cow position:
               
chr4:21064996-21064764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
30-307
               

               
Cow position:
               
chr4:23854151-23853890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 53
               

               
Conread position:
               
31-268
               

               
Cow position:
               
chr4:34166017-34166245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 116
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr5:70951859-70952018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr5:69461354-69461144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr5:57575792-57575567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr5:23168805-23169022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr5:21828889-21828637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr5:30253762-30253518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 163
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr5:61725988-61725712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr5:34638905-34638625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 146
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr5:34288448-34288721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr5:5111054-5111335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr5:74015962-74015682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr5:14314547-14314242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 231
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr5:74003618-74003820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr5:63185237-63185464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr5:42777780-42777537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr5:50482851-50483120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
14-180
               

               
Cow position:
               
chr5:16214693-16214527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 12
               

               
Conread position:
               
14-249
               

               
Cow position:
               
chr5:39710851-39710615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
15-201
               

               
Cow position:
               
chr5:44028294-44028478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
15-306
               

               
Cow position:
               
chr5:64393170-64392874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
10, 282
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr5:63992164-63992422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
19-261
               

               
Cow position:
               
chr5:48143779-48144027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr5:35209470-35209730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr5:37713892-37714146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
20-276
               

               
Cow position:
               
chr5:61488104-61488362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 204
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chr5:45999016-45999279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
11, 187
               

               
Conread position:
               
22-266
               

               
Cow position:
               
chr5:1950061-1950300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
26-268
               

               
Cow position:
               
chr5:45940615-45940850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
28-267
               

               
Cow position:
               
chr5:1276468-1276718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
54, 213
               

               
Conread position:
               
30-278
               

               
Cow position:
               
chr5:50821776-50821535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 158
               

               
Conread position:
               
33-273
               

               
Cow position:
               
chr5:44446877-44447134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 237
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr6:61608547-61608351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr6:5609410-5609653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr6:24962178-24961931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr6:21542358-21542095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr6:58173220-58172948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
6-282
               

               
Cow position:
               
chr6:61269344-61269088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
16-271
               

               
Cow position:
               
chr6:6063267-6063507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
17-267
               

               
Cow position:
               
chr6:7173730-7173990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 246
               

               
Conread position:
               
18-235
               

               
Cow position:
               
chr6:53731542-53731325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
21-229
               

               
Cow position:
               
chr6:8187501-8187709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
21-252
               

               
Cow position:
               
chr6:48344350-48344115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr6:15305594-15305349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
26-252
               

               
Cow position:
               
chr6:35415505-35415734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 130
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr6:28977035-28977258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
29-252
               

               
Cow position:
               
chr6:15922991-15923210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
29-283
               

               
Cow position:
               
chr6:54132821-54132575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 56
               

               
Conread position:
               
30-259
               

               
Cow position:
               
chr6:1907549-1907319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
101, 62
               

               
Conread position:
               
30-261
               

               
Cow position:
               
chr6:38614824-38614602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
31-262
               

               
Cow position:
               
chr6:55282280-55282513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 201
               

               
Conread position:
               
31-279
               

               
Cow position:
               
chr6:9736642-9736879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
34-242
               

               
Cow position:
               
chr6:6400955-6400745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr7:58923436-58923276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr7:28544214-28544066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr7:18188187-18188345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr7:8272699-8272526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr7:30816250-30816450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr7:40121504-40121250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
18, 148
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr7:26771908-26771662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr7:23936149-23935891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr7:63112738-63113002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr7:23679554-23679831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr7:27079664-27079397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr7:34422229-34422499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 148
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr7:36665363-36665089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr7:31170911-31171237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 138
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr7:35275041-35275306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 148
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr7:39988442-39988173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr7:29010363-29010629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
15-282
               

               
Cow position:
               
chr7:27123273-27123007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 6
               

               
Conread position:
               
19-267
               

               
Cow position:
               
chr7:25703205-25703444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
19-306
               

               
Cow position:
               
chr7:40952839-40953128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr7:31094329-31094577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
111, 99
               

               
Conread position:
               
20-339
               

               
Cow position:
               
chr7:26665533-26665849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
13, 212
               

               
Conread position:
               
24-211
               

               
Cow position:
               
chr7:29479542-29479352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
25-281
               

               
Cow position:
               
chr7:21240099-21240348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
26-250
               

               
Cow position:
               
chr7:45709189-45709417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr7:12658980-12659240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr7:14450355-14450113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
28-252
               

               
Cow position:
               
chr7:22793362-22793136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
30-241
               

               
Cow position:
               
chr7:37372014-37371814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
120, 100
               

               
Conread position:
               
30-257
               

               
Cow position:
               
chr7:63946573-63946788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
98, 72
               

               
Conread position:
               
30-279
               

               
Cow position:
               
chr7:23205621-23205871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 119
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr7:54712429-54712174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 212
               

               
Conread position:
               
31-239
               

               
Cow position:
               
chr7:62603194-62602986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
33-276
               

               
Cow position:
               
chr7:46148863-46148631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
34-247
               

               
Cow position:
               
chr7:41315430-41315644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
3-171
               

               
Cow position:
               
chr8:55897808-55897970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr8:39174237-39174441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr8:34478126-34477865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr8:47136005-47136267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 94
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr8:20563753-20564020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
15, 149
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr8:1303914-1303640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr8:24371708-24371983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 164
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr8:50709060-50708778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr8:55716761-55716483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr8:32620983-32621270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr8:38894018-38893712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr8:40032804-40033113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 291
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr8:2897611-2897856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr8:23018506-23018709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr8:10337034-10337304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 59
               

               
Conread position:
               
9-195
               

               
Cow position:
               
chr8:6951526-6951342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr8:29624968-29625204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr8:10456467-10456215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 142
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr8:25249785-25249524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr8:57943348-57943606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr8:28229466-28229738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 9
               

               
Conread position:
               
15-252
               

               
Cow position:
               
chr8:51905049-51905287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr8:39100836-39100653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
19-249
               

               
Cow position:
               
chr8:57045507-57045738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 44
               

               
Conread position:
               
19-266
               

               
Cow position:
               
chr8:60320508-60320266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr8:36505367-36505114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr8:24471639-24471352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 125
               

               
Conread position:
               
21-218
               

               
Cow position:
               
chr8:59438294-59438492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
21-266
               

               
Cow position:
               
chr8:20107796-20108039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
129, 113
               

               
Conread position:
               
24-249
               

               
Cow position:
               
chr8:34410434-34410214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 68
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr8:39985756-39985976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr8:20306960-20306702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
27-282
               

               
Cow position:
               
chr8:52925734-52925992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
29-267
               

               
Cow position:
               
chr8:37571723-37571963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 179
               

               
Conread position:
               
29-279
               

               
Cow position:
               
chr8:57389267-57389019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 94
               

               
Conread position:
               
30-141
               

               
Cow position:
               
chr8:45447123-45447236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
30-161
               

               
Cow position:
               
chr8:19717122-19717250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
30-216
               

               
Cow position:
               
chr8:32093857-32093676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 119
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr8:30135899-30135679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
30-269
               

               
Cow position:
               
chr8:44000510-44000747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
30-278
               

               
Cow position:
               
chr8:24201885-24201635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 141
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr8:24934132-24933879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 132
               

               
Conread position:
               
33-266
               

               
Cow position:
               
chr8:6073842-6074053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr8:38464985-38464739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
34-301
               

               
Cow position:
               
chr8:10400271-10400011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr9:60027232-60027386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr9:30195248-30195428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr9:34286833-34287062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr9:60037684-60037937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 175
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr9:28747486-28747216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr9:2022728-2023001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr9:5763599-5763317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr9:34958022-34957739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chr9:55256518-55256224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr9:34742689-34742466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr9:44832020-44831744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
9-207
               

               
Cow position:
               
chr9:1938170-1938361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
9-253
               

               
Cow position:
               
chr9:10144439-10144189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr9:62361195-62360916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chr9:26344929-26344636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr9:16180343-16180068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
15-268
               

               
Cow position:
               
chr9:10118619-10118365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
15-283
               

               
Cow position:
               
chr9:5433682-5433944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
15-328
               

               
Cow position:
               
chr9:31124885-31124569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 279
               

               
Conread position:
               
16-279
               

               
Cow position:
               
chr9:62698756-62698494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr9:41416397-41416663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr9:23431092-23430834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 7
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr9:10127619-10127361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 201
               

               
Conread position:
               
30-235
               

               
Cow position:
               
chr9:5836215-5836427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
30-267
               

               
Cow position:
               
chr9:58669435-58669675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
3-117
               

               
Cow position:
               
chrX:1466184-1466069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chrX:34314053-34313887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chrX:8869380-8869601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chrX:37574862-37574635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chrX:21672576-21672311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chrX:34532542-34532274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chrX:45430000-45430275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chrX:33639990-33639683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chrX:8991901-8991688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chrX:41884396-41884658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chrX:7571914-7571649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chrX:19015446-19015185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
14-252
               

               
Cow position:
               
chrX:2648343-2648576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chrX:23122402-23122127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
14-286
               

               
Cow position:
               
chrX:38936707-38936439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
14-292
               

               
Cow position:
               
chrX:28835895-28836168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
14-294
               

               
Cow position:
               
chrX:1616034-1616320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
15-283
               

               
Cow position:
               
chrX:45403819-45404091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
16-267
               

               
Cow position:
               
chrX:30862321-30862061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
24-255
               

               
Cow position:
               
chrX:3147200-3146967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chrX:42469945-42470194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
30-278
               

               
Cow position:
               
chrX:678577-678820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chrX:40557689-40557933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 133