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Cow genome map

           
Conread name:
           
Lng1-LNG010009D03
        

               
Conread position:
               
62-563
               

               
Cow position:
               
chr10:6262855-6262328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 506
               

               
Conread position:
               
63-205
               

               
Cow position:
               
chr10:42641527-42641673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
63-284
               

               
Cow position:
               
chr10:34668266-34668042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 197
               

               
Conread position:
               
223-532
               

               
Cow position:
               
chr10:14906816-14907130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
269-563
               

               
Cow position:
               
chr10:39882590-39882287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
569-731
               

               
Cow position:
               
chr10:6261834-6261666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
569-739
               

               
Cow position:
               
chr10:53363432-53363610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr10:39881841-39881657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr10:24314371-24314193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
59-540
               

               
Cow position:
               
chr11:47311913-47311417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
92, 227
               

               
Conread position:
               
63-232
               

               
Cow position:
               
chr11:45107886-45108054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
63-520
               

               
Cow position:
               
chr11:76376222-76375752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
63-539
               

               
Cow position:
               
chr11:47763330-47762829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 41
               

               
Conread position:
               
89-355
               

               
Cow position:
               
chr11:30204500-30204777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
569-734
               

               
Cow position:
               
chr11:13068754-13068589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 134
               

               
Conread position:
               
569-734
               

               
Cow position:
               
chr11:13161243-13161408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 134
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr11:9416565-9416381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr11:10218480-10218301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 6
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr11:30186173-30186356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr11:36761168-36761349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr11:38006249-38006066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
59-221
               

               
Cow position:
               
chr12:8984331-8984164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 122
               

               
Conread position:
               
59-549
               

               
Cow position:
               
chr12:30580484-30579974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 91
               

               
Conread position:
               
157-553
               

               
Cow position:
               
chr12:48417252-48416836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
576-742
               

               
Cow position:
               
chr12:17974917-17975086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 155
               

               
Conread position:
               
38-328
               

               
Cow position:
               
chr13:26823970-26823663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
59-553
               

               
Cow position:
               
chr13:22188223-22187717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
63-552
               

               
Cow position:
               
chr13:21129448-21129941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
65-215
               

               
Cow position:
               
chr13:43851456-43851308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
228-555
               

               
Cow position:
               
chr13:43851052-43850715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
136, 35
               

               
Conread position:
               
563-742
               

               
Cow position:
               
chr13:22186582-22186398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr13:21130432-21130611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr13:30261394-30261575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr13:34047786-34047966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
57-554
               

               
Cow position:
               
chr14:38817836-38817319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
63-270
               

               
Cow position:
               
chr14:39724669-39724456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 130
               

               
Conread position:
               
63-549
               

               
Cow position:
               
chr14:39296952-39297463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 90
               

               
Conread position:
               
64-238
               

               
Cow position:
               
chr14:9517564-9517391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
80-233
               

               
Cow position:
               
chr14:42123824-42123670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
82-532
               

               
Cow position:
               
chr14:50131417-50131892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
571-747
               

               
Cow position:
               
chr14:30707659-30707481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
588-742
               

               
Cow position:
               
chr14:39723127-39722969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
56-235
               

               
Cow position:
               
chr15:38154244-38154424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
59-377
               

               
Cow position:
               
chr15:21603001-21603335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
59-503
               

               
Cow position:
               
chr15:32285013-32285463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
62-233
               

               
Cow position:
               
chr15:6483485-6483658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
63-225
               

               
Cow position:
               
chr15:17289478-17289643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
63-227
               

               
Cow position:
               
chr15:325073-325239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
63-286
               

               
Cow position:
               
chr15:447499-447270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 173
               

               
Conread position:
               
63-476
               

               
Cow position:
               
chr15:36639660-36640093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
63-523
               

               
Cow position:
               
chr15:687164-687647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 195
               

               
Conread position:
               
63-529
               

               
Cow position:
               
chr15:6597483-6597000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
89, 41
               

               
Conread position:
               
63-542
               

               
Cow position:
               
chr15:6388781-6388272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 259
               

               
Conread position:
               
64-232
               

               
Cow position:
               
chr15:8722397-8722568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
64-563
               

               
Cow position:
               
chr15:30808367-30808862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
106-372
               

               
Cow position:
               
chr15:4955100-4955371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
228-566
               

               
Cow position:
               
chr15:32670930-32671277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
150, 27
               

               
Conread position:
               
569-723
               

               
Cow position:
               
chr15:32671667-32671825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
575-742
               

               
Cow position:
               
chr15:32286309-32286482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
40-539
               

               
Cow position:
               
chr16:41761024-41760501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
59-543
               

               
Cow position:
               
chr16:24126788-24127297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 218
               

               
Conread position:
               
60-233
               

               
Cow position:
               
chr16:36204700-36204525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 116
               

               
Conread position:
               
62-557
               

               
Cow position:
               
chr16:36238953-36239458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
63-553
               

               
Cow position:
               
chr16:25164846-25165357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
63-553
               

               
Cow position:
               
chr16:28875024-28875518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
63-553
               

               
Cow position:
               
chr16:34501352-34501836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
63-554
               

               
Cow position:
               
chr16:24042591-24043084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 137
               

               
Conread position:
               
63-554
               

               
Cow position:
               
chr16:25291378-25291886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
73-549
               

               
Cow position:
               
chr16:25081734-25082239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
124-545
               

               
Cow position:
               
chr16:28156362-28156803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
231-438
               

               
Cow position:
               
chr16:10769891-10770112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
568-725
               

               
Cow position:
               
chr16:16818942-16818776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
569-732
               

               
Cow position:
               
chr16:23872872-23872715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr16:14668969-14669143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr16:24155748-24155576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 106
               

               
Conread position:
               
573-742
               

               
Cow position:
               
chr16:25293038-25293216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
63-234
               

               
Cow position:
               
chr17:245740-245914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
63-288
               

               
Cow position:
               
chr17:2028135-2028366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
37-392
               

               
Cow position:
               
chr18:4885983-4885616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
59-286
               

               
Cow position:
               
chr18:16395770-16395537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
59-516
               

               
Cow position:
               
chr18:9159961-9159494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 248
               

               
Conread position:
               
63-520
               

               
Cow position:
               
chr18:35846086-35845618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 100
               

               
Conread position:
               
63-535
               

               
Cow position:
               
chr18:33748249-33748748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
157-516
               

               
Cow position:
               
chr18:9189380-9189004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 148
               

               
Conread position:
               
370-548
               

               
Cow position:
               
chr18:50650714-50650891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr18:9187311-9187128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
62-288
               

               
Cow position:
               
chr19:7406759-7406535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
63-282
               

               
Cow position:
               
chr19:32185827-32185604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 169
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr19:48862793-48862543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 80
               

               
Conread position:
               
223-431
               

               
Cow position:
               
chr19:14231143-14231363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
570-742
               

               
Cow position:
               
chr19:7450534-7450354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
54-234
               

               
Cow position:
               
chr20:18331010-18330828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
59-539
               

               
Cow position:
               
chr20:11279363-11278864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 254
               

               
Conread position:
               
63-523
               

               
Cow position:
               
chr20:10105063-10104569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
64-364
               

               
Cow position:
               
chr20:8966044-8965723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
104-214
               

               
Cow position:
               
chr20:15063750-15063861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
280-563
               

               
Cow position:
               
chr20:18330817-18330527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr20:19367881-19367699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
570-742
               

               
Cow position:
               
chr20:18328862-18328686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
25-234
               

               
Cow position:
               
chr21:2676937-2676725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
59-233
               

               
Cow position:
               
chr21:34011828-34011653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
59-234
               

               
Cow position:
               
chr21:18286144-18286318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 142
               

               
Conread position:
               
62-167
               

               
Cow position:
               
chr21:995332-995226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
66-495
               

               
Cow position:
               
chr21:9889224-9889672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
107-374
               

               
Cow position:
               
chr21:3192057-3192331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
45, 220
               

               
Conread position:
               
157-554
               

               
Cow position:
               
chr21:995006-994591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 328
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr21:993491-993311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr21:34002759-34002576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
60-523
               

               
Cow position:
               
chr22:1273301-1272824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
91, 111
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chr22:5306805-5306949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
63-225
               

               
Cow position:
               
chr22:44356475-44356314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
63-232
               

               
Cow position:
               
chr22:8872171-8872338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
63-234
               

               
Cow position:
               
chr22:36582729-36582560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
89, 141
               

               
Conread position:
               
63-256
               

               
Cow position:
               
chr22:13491932-13492128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 170
               

               
Conread position:
               
63-321
               

               
Cow position:
               
chr22:36555032-36554772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
153, 87
               

               
Conread position:
               
63-321
               

               
Cow position:
               
chr22:36593815-36593545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
89, 115
               

               
Conread position:
               
63-328
               

               
Cow position:
               
chr22:10963226-10963499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 160
               

               
Conread position:
               
63-527
               

               
Cow position:
               
chr22:294887-294405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
63-541
               

               
Cow position:
               
chr22:45108107-45107626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
89, 192
               

               
Conread position:
               
64-520
               

               
Cow position:
               
chr22:5934917-5934443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
65-377
               

               
Cow position:
               
chr22:2566092-2565774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 131
               

               
Conread position:
               
77-286
               

               
Cow position:
               
chr22:301488-301277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 102
               

               
Conread position:
               
111-429
               

               
Cow position:
               
chr22:8155180-8154835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
223-468
               

               
Cow position:
               
chr22:8743813-8743570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
228-545
               

               
Cow position:
               
chr22:8872367-8872696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 202
               

               
Conread position:
               
565-715
               

               
Cow position:
               
chr22:8154213-8154066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
569-741
               

               
Cow position:
               
chr22:36592960-36592783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr22:293785-293612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr22:8873238-8873423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr22:10964554-10964734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
57, 139
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr22:35944032-35943852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
571-742
               

               
Cow position:
               
chr22:36581717-36581543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
59-352
               

               
Cow position:
               
chr23:6212731-6213019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 64
               

               
Conread position:
               
63-481
               

               
Cow position:
               
chr23:26835498-26835940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
569-738
               

               
Cow position:
               
chr23:6214100-6214278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 117
               

               
Conread position:
               
573-742
               

               
Cow position:
               
chr23:1322470-1322291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
62-285
               

               
Cow position:
               
chr24:6045516-6045744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
62-553
               

               
Cow position:
               
chr24:14875640-14875128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 242
               

               
Conread position:
               
63-227
               

               
Cow position:
               
chr24:12117331-12117164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 133
               

               
Conread position:
               
63-403
               

               
Cow position:
               
chr24:16651704-16651354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 286
               

               
Conread position:
               
64-311
               

               
Cow position:
               
chr24:6665096-6664840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 199
               

               
Conread position:
               
77-375
               

               
Cow position:
               
chr24:28696835-28697151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
370-532
               

               
Cow position:
               
chr24:6045787-6045949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
575-742
               

               
Cow position:
               
chr24:14873890-14873714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
577-742
               

               
Cow position:
               
chr24:6047706-6047880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
58-549
               

               
Cow position:
               
chr25:18279653-18279134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 141
               

               
Conread position:
               
63-232
               

               
Cow position:
               
chr25:18357856-18357684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
63-545
               

               
Cow position:
               
chr25:26926728-26927229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
91-228
               

               
Cow position:
               
chr25:40741465-40741603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
59-227
               

               
Cow position:
               
chr26:34011581-34011751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
63-289
               

               
Cow position:
               
chr26:6491273-6491048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
63-579
               

               
Cow position:
               
chr26:12581025-12581570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
89-352
               

               
Cow position:
               
chr26:17321048-17321316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
194-584
               

               
Cow position:
               
chr26:17321355-17321759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
59-558
               

               
Cow position:
               
chr27:6010942-6011472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 242
               

               
Conread position:
               
560-747
               

               
Cow position:
               
chr27:24560562-24560756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
569-701
               

               
Cow position:
               
chr27:6012556-6012698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
59-554
               

               
Cow position:
               
chr28:29439263-29438754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 127
               

               
Conread position:
               
63-232
               

               
Cow position:
               
chr28:10291535-10291705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
63-262
               

               
Cow position:
               
chr28:18144734-18144540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
63-549
               

               
Cow position:
               
chr28:5794492-5795011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
228-568
               

               
Cow position:
               
chr28:10291723-10292055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr28:10591957-10591774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr28:29437730-29437548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
63-212
               

               
Cow position:
               
chr29:8063664-8063513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
63-288
               

               
Cow position:
               
chr29:32523944-32523719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 163
               

               
Conread position:
               
63-293
               

               
Cow position:
               
chr29:16594862-16595097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
87, 186
               

               
Conread position:
               
65-225
               

               
Cow position:
               
chr29:16018859-16018699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr29:16017759-16017576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
63-234
               

               
Cow position:
               
chr8:46096075-46095900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
63-286
               

               
Cow position:
               
chr8:12781516-12781293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
87, 116
               

               
Conread position:
               
63-290
               

               
Cow position:
               
chr8:38592719-38592487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
63-563
               

               
Cow position:
               
chr8:29948872-29948340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 246
               

               
Conread position:
               
64-234
               

               
Cow position:
               
chr8:11751978-11752148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 132
               

               
Conread position:
               
64-262
               

               
Cow position:
               
chr8:27294241-27294440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
64-557
               

               
Cow position:
               
chr8:51040797-51040283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
77-346
               

               
Cow position:
               
chr8:58188348-58188070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
366-553
               

               
Cow position:
               
chr8:6727247-6727061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
368-554
               

               
Cow position:
               
chr8:38580880-38580700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
569-741
               

               
Cow position:
               
chr8:39159919-39160103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr8:24877078-24876901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr8:38579689-38579503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr9:11521545-11521404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr9:26114777-26115142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
59-539
               

               
Cow position:
               
chr9:29325827-29326319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
59-555
               

               
Cow position:
               
chr9:54993304-54993775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
6, 109
               

               
Conread position:
               
63-213
               

               
Cow position:
               
chr9:1979070-1979221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
63-370
               

               
Cow position:
               
chr9:920484-920800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 132
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chr9:64158346-64158531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
575-742
               

               
Cow position:
               
chr9:59509870-59510040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
59-266
               

               
Cow position:
               
chrX:17634329-17634119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 175
               

               
Conread position:
               
59-557
               

               
Cow position:
               
chrX:36725991-36725488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 327
               

               
Conread position:
               
63-177
               

               
Cow position:
               
chrX:32429055-32429170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
63-229
               

               
Cow position:
               
chrX:10418969-10418801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
63-511
               

               
Cow position:
               
chrX:6252433-6251968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 136
               

               
Conread position:
               
63-521
               

               
Cow position:
               
chrX:12181281-12181749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 220
               

               
Conread position:
               
63-536
               

               
Cow position:
               
chrX:22807336-22807830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
63-545
               

               
Cow position:
               
chrX:29810682-29811186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 418
               

               
Conread position:
               
63-553
               

               
Cow position:
               
chrX:41891315-41890821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
103-232
               

               
Cow position:
               
chrX:27993158-27993028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
210-549
               

               
Cow position:
               
chrX:21583973-21584325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chrX:6251467-6251284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
569-742
               

               
Cow position:
               
chrX:28876391-28876206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
575-742
               

               
Cow position:
               
chrX:41890199-41890023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 103