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Cow genome map

           
Conread name:
           
Lng1-LNG010011G01
        

               
Conread position:
               
13-355
               

               
Cow position:
               
chr10:26796964-26796624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
13-549
               

               
Cow position:
               
chr10:22101645-22102210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
17-699
               

               
Cow position:
               
chr10:62584620-62585329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
20-330
               

               
Cow position:
               
chr10:19715152-19714843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr10:2120591-2120284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr10:38538081-38537770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
23-560
               

               
Cow position:
               
chr10:29846229-29845663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr10:16925953-16926670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
28-349
               

               
Cow position:
               
chr10:62602807-62602480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
28-550
               

               
Cow position:
               
chr10:23440734-23440189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
41-746
               

               
Cow position:
               
chr10:24103064-24102350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
261, 16
               

               
Conread position:
               
57-663
               

               
Cow position:
               
chr10:53246944-53246315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
64-450
               

               
Cow position:
               
chr10:43263484-43263076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 103
               

               
Conread position:
               
253-521
               

               
Cow position:
               
chr10:10708612-10708317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
20-484
               

               
Cow position:
               
chr11:35387524-35387038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
20-699
               

               
Cow position:
               
chr11:43514580-43513854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr11:9157097-9156791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr11:11988168-11988722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
28-262
               

               
Cow position:
               
chr11:56649397-56649629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr11:1851577-1851831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
28-332
               

               
Cow position:
               
chr11:77267722-77267428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
28-450
               

               
Cow position:
               
chr11:61769278-61768842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
31-535
               

               
Cow position:
               
chr11:12417785-12417276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
254, 24
               

               
Conread position:
               
32-301
               

               
Cow position:
               
chr11:52766669-52766934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
34-549
               

               
Cow position:
               
chr11:26124856-26124316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
38-240
               

               
Cow position:
               
chr11:15697930-15697733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr11:55223506-55223750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 128
               

               
Conread position:
               
46-549
               

               
Cow position:
               
chr11:23877387-23877905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
46-699
               

               
Cow position:
               
chr11:12358340-12357637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
72-698
               

               
Cow position:
               
chr11:9763631-9762973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
227, 18
               

               
Conread position:
               
450-699
               

               
Cow position:
               
chr11:21615795-21616057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
20-338
               

               
Cow position:
               
chr12:33555150-33555461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
20-549
               

               
Cow position:
               
chr12:22205405-22204845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
22-549
               

               
Cow position:
               
chr12:28765676-28765120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
20-239
               

               
Cow position:
               
chr13:23043828-23043616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
23-330
               

               
Cow position:
               
chr13:23003182-23002877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
23-339
               

               
Cow position:
               
chr13:34325437-34325124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr13:32545503-32546059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr13:3654194-3653473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr13:3776526-3776840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
28-515
               

               
Cow position:
               
chr13:27652740-27653218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
30-555
               

               
Cow position:
               
chr13:34020589-34020049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
77, 51
               

               
Conread position:
               
34-333
               

               
Cow position:
               
chr13:1593019-1592720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-430
               

               
Cow position:
               
chr13:34042231-34041835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
61-460
               

               
Cow position:
               
chr13:21850006-21850383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
137, 19
               

               
Conread position:
               
345-698
               

               
Cow position:
               
chr13:34206314-34205934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 129
               

               
Conread position:
               
22-567
               

               
Cow position:
               
chr14:18882688-18882129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
23-342
               

               
Cow position:
               
chr14:50110570-50110888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
31-699
               

               
Cow position:
               
chr14:17685407-17686120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
34-549
               

               
Cow position:
               
chr14:44287237-44286698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
70-549
               

               
Cow position:
               
chr14:7472410-7472910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
232, 92
               

               
Conread position:
               
23-333
               

               
Cow position:
               
chr15:42936718-42937022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
279, 39
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr15:7837248-7837558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr15:37392494-37392804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr15:21665742-21665191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-560
               

               
Cow position:
               
chr15:10888619-10889184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
24-444
               

               
Cow position:
               
chr15:9658493-9658075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
28-380
               

               
Cow position:
               
chr15:33644795-33644449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr15:19738038-19737741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
35-335
               

               
Cow position:
               
chr15:15347103-15346805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
46-284
               

               
Cow position:
               
chr15:3261307-3261073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
46-402
               

               
Cow position:
               
chr15:6553793-6553431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
51-746
               

               
Cow position:
               
chr15:6155915-6155178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
57-399
               

               
Cow position:
               
chr15:44580913-44580576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
230, 23
               

               
Conread position:
               
60-703
               

               
Cow position:
               
chr15:18069455-18068782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
274, 19
               

               
Conread position:
               
85-549
               

               
Cow position:
               
chr15:20400706-20401164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
218, 76
               

               
Conread position:
               
107-654
               

               
Cow position:
               
chr15:34367602-34367025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 55
               

               
Conread position:
               
134-329
               

               
Cow position:
               
chr15:44190701-44190507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
169, 31
               

               
Conread position:
               
7-699
               

               
Cow position:
               
chr16:44867852-44867131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 73
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr16:407375-407067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr16:2483483-2483173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr16:40296521-40296210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr16:8816449-8815725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr16:12538269-12537547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
24-221
               

               
Cow position:
               
chr16:1646225-1646417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
26-402
               

               
Cow position:
               
chr16:28867487-28867109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
279, 25
               

               
Conread position:
               
34-349
               

               
Cow position:
               
chr16:30070264-30070577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 135
               

               
Conread position:
               
46-708
               

               
Cow position:
               
chr16:31592234-31591532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
47-333
               

               
Cow position:
               
chr16:15566421-15566707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
51-333
               

               
Cow position:
               
chr16:28471416-28471136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
251, 20
               

               
Conread position:
               
122-691
               

               
Cow position:
               
chr16:51243254-51242664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
457-699
               

               
Cow position:
               
chr16:11782264-11782017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
21-698
               

               
Cow position:
               
chr17:14911240-14910520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 64
               

               
Conread position:
               
23-346
               

               
Cow position:
               
chr17:2579849-2580169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr17:6260088-6260388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr17:15324067-15324367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
35-319
               

               
Cow position:
               
chr17:15850644-15850927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
46-349
               

               
Cow position:
               
chr17:21354347-21354645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
240, 34
               

               
Conread position:
               
111-542
               

               
Cow position:
               
chr17:20811573-20811119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
463-654
               

               
Cow position:
               
chr17:31951320-31951118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 159
               

               
Conread position:
               
20-691
               

               
Cow position:
               
chr18:37557408-37558105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr18:14416420-14416732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr18:40478825-40479136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr18:36508775-36509332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
35-333
               

               
Cow position:
               
chr18:27837862-27837567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
44-556
               

               
Cow position:
               
chr18:87924-88423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
299, 34
               

               
Conread position:
               
73-348
               

               
Cow position:
               
chr18:10036359-10036081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
80-706
               

               
Cow position:
               
chr18:20693654-20692999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
214, 76
               

               
Conread position:
               
116-557
               

               
Cow position:
               
chr18:37527154-37527604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
206-699
               

               
Cow position:
               
chr18:5517552-5517047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
19-346
               

               
Cow position:
               
chr19:439000-438676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr19:5729276-5729587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr19:2273939-2273388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr19:39185099-39184373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
29-560
               

               
Cow position:
               
chr19:25174035-25173486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
274, 27
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr19:25022805-25022574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
171-374
               

               
Cow position:
               
chr19:40799986-40799780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
20-333
               

               
Cow position:
               
chr2:81209311-81209006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
20-549
               

               
Cow position:
               
chr2:36980259-36980819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
21-688
               

               
Cow position:
               
chr2:69139816-69140526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 58
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr2:11159238-11158680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr2:12224425-12223874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr2:13045817-13045275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
23-698
               

               
Cow position:
               
chr2:282804-282084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-725
               

               
Cow position:
               
chr2:50077488-50078230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
33-521
               

               
Cow position:
               
chr2:25102460-25101968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 112
               

               
Conread position:
               
46-743
               

               
Cow position:
               
chr2:53329668-53330408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
69-325
               

               
Cow position:
               
chr2:26070953-26070708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
225, 21
               

               
Conread position:
               
70-662
               

               
Cow position:
               
chr2:13125004-13124380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
233, 20
               

               
Conread position:
               
96-546
               

               
Cow position:
               
chr2:8588904-8588446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
207, 70
               

               
Conread position:
               
110-535
               

               
Cow position:
               
chr2:79247451-79247026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
240, 57
               

               
Conread position:
               
116-332
               

               
Cow position:
               
chr2:27609376-27609158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
185, 51
               

               
Conread position:
               
175-711
               

               
Cow position:
               
chr2:72695339-72695905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
118, 64
               

               
Conread position:
               
17-328
               

               
Cow position:
               
chr20:28161168-28161473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
285, 54
               

               
Conread position:
               
19-549
               

               
Cow position:
               
chr20:23469268-23468706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
20-560
               

               
Cow position:
               
chr20:5535336-5535903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
20-560
               

               
Cow position:
               
chr20:15292406-15292971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
23-319
               

               
Cow position:
               
chr20:8003822-8003530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 48
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr20:15097473-15096924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
34-402
               

               
Cow position:
               
chr20:40356665-40357033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
39-549
               

               
Cow position:
               
chr20:17704449-17703915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 108
               

               
Conread position:
               
46-549
               

               
Cow position:
               
chr20:30684747-30685275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
70-699
               

               
Cow position:
               
chr20:12568970-12569646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 99
               

               
Conread position:
               
17-332
               

               
Cow position:
               
chr21:27282903-27283216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr21:40271158-40270847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
51-337
               

               
Cow position:
               
chr21:27070715-27070432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
251, 20
               

               
Conread position:
               
14-560
               

               
Cow position:
               
chr22:15313615-15313041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
20-342
               

               
Cow position:
               
chr22:44396787-44397110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
20-692
               

               
Cow position:
               
chr22:44934321-44935029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
20-699
               

               
Cow position:
               
chr22:36861189-36860473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
22-687
               

               
Cow position:
               
chr22:39259355-39258661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
23-285
               

               
Cow position:
               
chr22:14208066-14207808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr22:34168680-34169237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr22:31313700-31313999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-346
               

               
Cow position:
               
chr22:18816025-18815717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
72-660
               

               
Cow position:
               
chr22:33953274-33953886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
232, 90
               

               
Conread position:
               
105-657
               

               
Cow position:
               
chr22:26835559-26834994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
245, 57
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr23:27399849-27400160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr23:36031026-36030720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
23-557
               

               
Cow position:
               
chr23:20155866-20155312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
32-549
               

               
Cow position:
               
chr23:14948383-14947846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr23:22920155-22920493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
137, 16
               

               
Conread position:
               
12-549
               

               
Cow position:
               
chr24:22971507-22972075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
15-557
               

               
Cow position:
               
chr24:18128078-18127506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
30-549
               

               
Cow position:
               
chr24:17404290-17404821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
273, 49
               

               
Conread position:
               
39-240
               

               
Cow position:
               
chr24:28922279-28922084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
23-319
               

               
Cow position:
               
chr25:18889623-18889331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
34-284
               

               
Cow position:
               
chr25:8675318-8675565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr25:22147941-22148239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-694
               

               
Cow position:
               
chr25:36641647-36640981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
70-300
               

               
Cow position:
               
chr25:27365296-27365522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
196, 15
               

               
Conread position:
               
34-284
               

               
Cow position:
               
chr26:28084097-28084344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
34-342
               

               
Cow position:
               
chr26:9562933-9562628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr27:23335513-23335821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr27:26325416-26325727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-691
               

               
Cow position:
               
chr27:9992853-9992140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr27:893568-893868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr27:14460096-14459796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
47-699
               

               
Cow position:
               
chr27:29463276-29463936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
175-349
               

               
Cow position:
               
chr27:171816-171989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
20-333
               

               
Cow position:
               
chr28:1167493-1167178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
23-274
               

               
Cow position:
               
chr28:2083988-2084232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
23-330
               

               
Cow position:
               
chr28:1505259-1505566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr28:5113904-5113596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr28:5566539-5567100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr28:7002384-7002941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
34-549
               

               
Cow position:
               
chr28:13460374-13460919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-743
               

               
Cow position:
               
chr28:26425846-26425102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
39-676
               

               
Cow position:
               
chr28:3564947-3564329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
170-335
               

               
Cow position:
               
chr28:16923623-16923457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr29:5315488-5315031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
17-284
               

               
Cow position:
               
chr29:43322908-43323171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
17-486
               

               
Cow position:
               
chr29:32982708-32983200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
20-335
               

               
Cow position:
               
chr29:19622893-19622578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
23-319
               

               
Cow position:
               
chr29:14586275-14586571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-328
               

               
Cow position:
               
chr29:25932183-25931880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-330
               

               
Cow position:
               
chr29:48113-47808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-333
               

               
Cow position:
               
chr29:40502624-40502314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-341
               

               
Cow position:
               
chr29:15894497-15894183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr29:34799450-34798731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
47-549
               

               
Cow position:
               
chr29:2100229-2100758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
78-535
               

               
Cow position:
               
chr29:13574035-13573545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
464-689
               

               
Cow position:
               
chr29:5314907-5314679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
15-549
               

               
Cow position:
               
chr3:72630336-72630899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
15-565
               

               
Cow position:
               
chr3:19756691-19756107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 151
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr3:40823664-40823972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr3:53515883-53516438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr3:57484452-57483738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
28-719
               

               
Cow position:
               
chr3:52226822-52227534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
29-558
               

               
Cow position:
               
chr3:82933079-82933625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
274, 52
               

               
Conread position:
               
34-699
               

               
Cow position:
               
chr3:24453507-24454194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 46
               

               
Conread position:
               
43-335
               

               
Cow position:
               
chr3:30314851-30315141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
46-335
               

               
Cow position:
               
chr3:52863834-52863550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
112-691
               

               
Cow position:
               
chr3:79116555-79117161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
181, 41
               

               
Conread position:
               
168-557
               

               
Cow position:
               
chr3:61030125-61030516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
171-664
               

               
Cow position:
               
chr3:33821148-33820655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
181-744
               

               
Cow position:
               
chr3:76382069-76381477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
11-335
               

               
Cow position:
               
chr4:57984049-57984374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
20-228
               

               
Cow position:
               
chr4:10109631-10109422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
20-699
               

               
Cow position:
               
chr4:36896445-36897174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
23-297
               

               
Cow position:
               
chr4:45049216-45048946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
28-335
               

               
Cow position:
               
chr4:31669359-31669662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chr4:44725178-44725477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
92-300
               

               
Cow position:
               
chr4:26628965-26628764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
14-335
               

               
Cow position:
               
chr5:54792472-54792155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
16-527
               

               
Cow position:
               
chr5:69621368-69621899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
20-613
               

               
Cow position:
               
chr5:24588931-24589552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
23-342
               

               
Cow position:
               
chr5:37732523-37732837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-664
               

               
Cow position:
               
chr5:3503928-3503264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-690
               

               
Cow position:
               
chr5:10918996-10919711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-691
               

               
Cow position:
               
chr5:4069391-4070096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-694
               

               
Cow position:
               
chr5:46738402-46737685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr5:57482369-57481643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 140
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr5:64781841-64781120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
28-693
               

               
Cow position:
               
chr5:62360611-62361310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
275, 134
               

               
Conread position:
               
20-392
               

               
Cow position:
               
chr6:52693337-52693710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
23-560
               

               
Cow position:
               
chr6:5949462-5948897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr6:17046372-17047089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
34-590
               

               
Cow position:
               
chr6:11724781-11724196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
34-698
               

               
Cow position:
               
chr6:8760975-8760257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
125-706
               

               
Cow position:
               
chr6:2953779-2953166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
178, 41
               

               
Conread position:
               
168-710
               

               
Cow position:
               
chr6:20649598-20649032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
418-699
               

               
Cow position:
               
chr6:57408631-57408330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 210
               

               
Conread position:
               
20-335
               

               
Cow position:
               
chr7:8144841-8144525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
23-284
               

               
Cow position:
               
chr7:34149507-34149765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-312
               

               
Cow position:
               
chr7:21985810-21986098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr7:446222-445916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
148, 17
               

               
Conread position:
               
23-548
               

               
Cow position:
               
chr7:34486323-34486874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
23-691
               

               
Cow position:
               
chr7:14139192-14138476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr7:21127254-21126535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
279, 62
               

               
Conread position:
               
34-388
               

               
Cow position:
               
chr7:23803823-23804183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
7-400
               

               
Cow position:
               
chr8:10076667-10077058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
14-550
               

               
Cow position:
               
chr8:57019574-57020130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 75
               

               
Conread position:
               
20-693
               

               
Cow position:
               
chr8:25408314-25409036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 146
               

               
Conread position:
               
23-284
               

               
Cow position:
               
chr8:7161487-7161745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chr8:36635949-36635641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-347
               

               
Cow position:
               
chr8:19051072-19051391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr8:42484508-42485230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr8:47661729-47661005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
34-549
               

               
Cow position:
               
chr8:44243967-44243434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-699
               

               
Cow position:
               
chr8:4687002-4687717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
46-335
               

               
Cow position:
               
chr8:12449568-12449854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
256, 25
               

               
Conread position:
               
46-341
               

               
Cow position:
               
chr8:14928266-14927975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
63-293
               

               
Cow position:
               
chr8:23392178-23391952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
70-549
               

               
Cow position:
               
chr8:32318913-32318405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
232, 92
               

               
Conread position:
               
70-705
               

               
Cow position:
               
chr8:19330379-19331034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
232, 83
               

               
Conread position:
               
359-675
               

               
Cow position:
               
chr8:56487788-56487450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 218
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr9:22191319-22191527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
23-320
               

               
Cow position:
               
chr9:31807812-31808102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr9:18509555-18509015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chr9:29027956-29027413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-699
               

               
Cow position:
               
chr9:60277774-60277050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
28-311
               

               
Cow position:
               
chr9:51757656-51757372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
34-349
               

               
Cow position:
               
chr9:26683794-26684105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
35-341
               

               
Cow position:
               
chr9:47002449-47002751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
116-699
               

               
Cow position:
               
chr9:21109780-21110364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
192, 53
               

               
Conread position:
               
122-349
               

               
Cow position:
               
chr9:20026453-20026682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
270-560
               

               
Cow position:
               
chr9:24923774-24924082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
344-742
               

               
Cow position:
               
chr9:45150759-45151179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
58, 286
               

               
Conread position:
               
10-549
               

               
Cow position:
               
chrX:30711722-30712291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
11-699
               

               
Cow position:
               
chrX:27391072-27390316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 162
               

               
Conread position:
               
17-450
               

               
Cow position:
               
chrX:37332347-37332792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 123
               

               
Conread position:
               
20-335
               

               
Cow position:
               
chrX:21829673-21829989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chrX:20720137-20720448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-335
               

               
Cow position:
               
chrX:29096355-29096666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
23-341
               

               
Cow position:
               
chrX:3625445-3625750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
279, 32
               

               
Conread position:
               
23-549
               

               
Cow position:
               
chrX:15127088-15126532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
29-282
               

               
Cow position:
               
chrX:7407327-7407079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 5
               

               
Conread position:
               
31-335
               

               
Cow position:
               
chrX:2482475-2482171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 133
               

               
Conread position:
               
32-446
               

               
Cow position:
               
chrX:22611103-22611530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
34-335
               

               
Cow position:
               
chrX:970933-971233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
46-549
               

               
Cow position:
               
chrX:13412962-13412428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
46-709
               

               
Cow position:
               
chrX:320640-321347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
72-557
               

               
Cow position:
               
chrX:23418801-23418312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
230, 93
               

               
Conread position:
               
73-450
               

               
Cow position:
               
chrX:25611956-25612357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
75-698
               

               
Cow position:
               
chrX:24522979-24523617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
170-526
               

               
Cow position:
               
chrX:13851201-13851597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
239-702
               

               
Cow position:
               
chrX:21732357-21731888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 17