Non-Coding RNA Search

Cow genome map


           Conread name:
           Lng1-LNG010059B05
        

               Conread position:
               5-252
               

               Cow position:
               chr1:86610039-86610289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               11, 18
               

               Conread position:
               25-247
               

               Cow position:
               chr1:77656312-77656537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 32
               

               Conread position:
               25-671
               

               Cow position:
               chr1:55321927-55321278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               673
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 8
               

               Conread position:
               25-743
               

               Cow position:
               chr1:88269993-88269287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               741
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 8
               

               Conread position:
               49-248
               

               Cow position:
               chr1:38387102-38386900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               115, 46
               

               Conread position:
               49-773
               

               Cow position:
               chr1:67287077-67287800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               539
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 43
               

               Conread position:
               50-439
               

               Cow position:
               chr1:40512802-40512406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 42
               

               Conread position:
               78-773
               

               Cow position:
               chr1:8825334-8826027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 18
               

               Conread position:
               93-771
               

               Cow position:
               chr1:23052087-23052740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 28
               

               Conread position:
               98-760
               

               Cow position:
               chr1:63605475-63604810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 15
               

               Conread position:
               98-771
               

               Cow position:
               chr1:61309524-61310198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               421, 503
               

               Conread position:
               98-773
               

               Cow position:
               chr1:56144037-56143357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               99-767
               

               Cow position:
               chr1:3385718-3385052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               681
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr1:25179728-25179050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr1:28873376-28874060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:30534722-30534041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:42736754-42737437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:49973888-49973208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr1:52358975-52358279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               533
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:57568254-57568912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:62244345-62243664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:65386630-65387299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:68607241-68606562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               99-773
               

               Cow position:
               chr1:69403282-69403985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:73070754-73070079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:76545236-76544556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:82923877-82923208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr1:88131073-88131753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:93854823-93855496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 21
               

               Conread position:
               99-773
               

               Cow position:
               chr1:94659984-94660654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:99913719-99914405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr1:102434737-102434061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               100-594
               

               Cow position:
               chr1:29033418-29033924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 12
               

               Conread position:
               100-773
               

               Cow position:
               chr1:12061910-12061234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               100-773
               

               Cow position:
               chr1:72186574-72185902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 15
               

               Conread position:
               103-754
               

               Cow position:
               chr1:79456668-79456010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               666
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 314
               

               Conread position:
               103-773
               

               Cow position:
               chr1:33551228-33551906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 314
               

               Conread position:
               103-773
               

               Cow position:
               chr1:58336139-58336817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               103-773
               

               Cow position:
               chr1:69922134-69921455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 315
               

               Conread position:
               105-247
               

               Cow position:
               chr1:69537204-69537350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               105-326
               

               Cow position:
               chr1:33712371-33712596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 182
               

               Conread position:
               105-773
               

               Cow position:
               chr1:72081086-72081746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 41
               

               Conread position:
               106-772
               

               Cow position:
               chr1:48246155-48246815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 13
               

               Conread position:
               106-773
               

               Cow position:
               chr1:21999647-21998975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               107-761
               

               Cow position:
               chr1:76752342-76751682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               107-773
               

               Cow position:
               chr1:79636625-79636002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               673
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 47
               

               Conread position:
               109-773
               

               Cow position:
               chr1:22842957-22843621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 27
               

               Conread position:
               110-265
               

               Cow position:
               chr1:45019565-45019410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               54, 27
               

               Conread position:
               117-771
               

               Cow position:
               chr1:21087726-21088391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 495
               

               Conread position:
               119-769
               

               Cow position:
               chr1:33851590-33852263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 503
               

               Conread position:
               119-771
               

               Cow position:
               chr1:89425886-89426550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 485
               

               Conread position:
               121-771
               

               Cow position:
               chr1:8554644-8555306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               667
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 74
               

               Conread position:
               127-668
               

               Cow position:
               chr1:40053678-40054228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 129
               

               Conread position:
               127-769
               

               Cow position:
               chr1:31397013-31397667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 470
               

               Conread position:
               127-771
               

               Cow position:
               chr1:60339628-60340277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 127
               

               Conread position:
               127-771
               

               Cow position:
               chr1:86547812-86547164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               655
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 98
               

               Conread position:
               134-773
               

               Cow position:
               chr1:31365753-31365118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               651
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 173
               

               Conread position:
               137-671
               

               Cow position:
               chr1:95239702-95240245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 238
               

               Conread position:
               151-773
               

               Cow position:
               chr1:55156650-55156022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 11
               

               Conread position:
               163-773
               

               Cow position:
               chr1:5502332-5502946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 318
               

               Conread position:
               181-773
               

               Cow position:
               chr1:25550344-25550941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 175
               

               Conread position:
               200-670
               

               Cow position:
               chr1:89481189-89481642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 108
               

               Conread position:
               232-773
               

               Cow position:
               chr1:55777016-55777563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 13
               

               Conread position:
               245-773
               

               Cow position:
               chr1:6194683-6195214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 167
               

               Conread position:
               259-773
               

               Cow position:
               chr1:1460726-1460217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 144
               

               Conread position:
               272-771
               

               Cow position:
               chr1:86610619-86611124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               341
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               114, 63
               

               Conread position:
               280-773
               

               Cow position:
               chr1:76621204-76620704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 328
               

               Conread position:
               309-773
               

               Cow position:
               chr1:79111001-79111468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               346-773
               

               Cow position:
               chr1:98785261-98785683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               96, 10
               

               Conread position:
               380-760
               

               Cow position:
               chr1:22344671-22345045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               266
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               164, 76
               

               Conread position:
               380-761
               

               Cow position:
               chr1:18139867-18139485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 64
               

               Conread position:
               380-768
               

               Cow position:
               chr1:62805585-62805206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 22
               

               Conread position:
               380-773
               

               Cow position:
               chr1:63502417-63502808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               380-773
               

               Cow position:
               chr1:72038967-72038590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 48
               

               Conread position:
               380-773
               

               Cow position:
               chr1:72984091-72984482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 18
               

               Conread position:
               396-742
               

               Cow position:
               chr1:88564199-88563856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 30
               

               Conread position:
               413-771
               

               Cow position:
               chr1:81863889-81863527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 191
               

               Conread position:
               417-773
               

               Cow position:
               chr1:18241891-18241540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 187
               

               Conread position:
               426-771
               

               Cow position:
               chr1:28711519-28711869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 177
               

               Conread position:
               432-773
               

               Cow position:
               chr1:85779802-85779467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 170
               

               Conread position:
               441-773
               

               Cow position:
               chr1:27178825-27178483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               26, 158
               

               Conread position:
               441-773
               

               Cow position:
               chr1:40512367-40512033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               29, 154
               

               Conread position:
               449-771
               

               Cow position:
               chr1:20829563-20829879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               18, 155
               

               Conread position:
               469-773
               

               Cow position:
               chr1:38416565-38416856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 129
               

               Conread position:
               480-771
               

               Cow position:
               chr1:30283013-30282723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               41, 101
               

               Conread position:
               488-773
               

               Cow position:
               chr1:58883088-58882803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 89
               

               Conread position:
               502-725
               

               Cow position:
               chr1:18015985-18016201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               20, 90
               

               Conread position:
               529-773
               

               Cow position:
               chr1:18027061-18026819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               11, 69
               

               Conread position:
               537-773
               

               Cow position:
               chr1:57697410-57697186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               549-762
               

               Cow position:
               chr1:53364301-53364521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               47, 134
               

               Conread position:
               559-773
               

               Cow position:
               chr1:102781531-102781316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               7, 45
               

               Conread position:
               563-773
               

               Cow position:
               chr1:29979159-29978950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               112, 11
               

               Conread position:
               24-671
               

               Cow position:
               chr10:31524349-31524980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 26
               

               Conread position:
               25-498
               

               Cow position:
               chr10:14861497-14861978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 16
               

               Conread position:
               25-773
               

               Cow position:
               chr10:38545657-38544916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               765
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 69
               

               Conread position:
               49-358
               

               Cow position:
               chr10:28931124-28930805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 35
               

               Conread position:
               49-773
               

               Cow position:
               chr10:26596876-26597615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               751
               

               Alignm identity:
               569
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               78-354
               

               Cow position:
               chr10:54978945-54978679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               89, 8
               

               Conread position:
               98-773
               

               Cow position:
               chr10:22101564-22102240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 17
               

               Conread position:
               99-331
               

               Cow position:
               chr10:38848039-38848270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               69, 20
               

               Conread position:
               99-741
               

               Cow position:
               chr10:16925861-16926505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               656
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr10:7281768-7281088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr10:8290304-8290981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr10:21487241-21487921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr10:29846326-29845645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr10:38345036-38344357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               99-774
               

               Cow position:
               chr10:19511932-19512594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               100-771
               

               Cow position:
               chr10:38538178-38537500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 38
               

               Conread position:
               100-773
               

               Cow position:
               chr10:30685186-30684510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 5
               

               Conread position:
               103-773
               

               Cow position:
               chr10:62408523-62407841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 506
               

               Conread position:
               106-773
               

               Cow position:
               chr10:39040968-39040305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               108-773
               

               Cow position:
               chr10:66900026-66899366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 31
               

               Conread position:
               111-254
               

               Cow position:
               chr10:8339733-8339879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               54, 96
               

               Conread position:
               116-394
               

               Cow position:
               chr10:10582146-10582423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               51, 20
               

               Conread position:
               117-771
               

               Cow position:
               chr10:39180119-39180790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 90
               

               Conread position:
               119-771
               

               Cow position:
               chr10:41877254-41877918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 77
               

               Conread position:
               127-767
               

               Cow position:
               chr10:21740406-21739753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               660
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 160
               

               Conread position:
               127-771
               

               Cow position:
               chr10:28641885-28642534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 227
               

               Conread position:
               130-277
               

               Cow position:
               chr10:42751328-42751481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               50, 105
               

               Conread position:
               140-771
               

               Cow position:
               chr10:11698602-11699244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 89
               

               Conread position:
               155-589
               

               Cow position:
               chr10:19715187-19714744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 98
               

               Conread position:
               164-773
               

               Cow position:
               chr10:40151855-40151243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 26
               

               Conread position:
               176-773
               

               Cow position:
               chr10:14335444-14334846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 205
               

               Conread position:
               236-750
               

               Cow position:
               chr10:50135021-50135541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 68
               

               Conread position:
               243-771
               

               Cow position:
               chr10:11685180-11684645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 204
               

               Conread position:
               245-773
               

               Cow position:
               chr10:58596875-58597381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 56
               

               Conread position:
               247-675
               

               Cow position:
               chr10:57482571-57482149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 57
               

               Conread position:
               258-773
               

               Cow position:
               chr10:124872-125395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 347
               

               Conread position:
               261-642
               

               Cow position:
               chr10:61927713-61927331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               116, 72
               

               Conread position:
               271-773
               

               Cow position:
               chr10:42749345-42749831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 44
               

               Conread position:
               285-773
               

               Cow position:
               chr10:29632258-29631765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 56
               

               Conread position:
               295-769
               

               Cow position:
               chr10:33347865-33348345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 134
               

               Conread position:
               298-670
               

               Cow position:
               chr10:46196027-46196410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 26
               

               Conread position:
               322-773
               

               Cow position:
               chr10:42110954-42111428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 158
               

               Conread position:
               389-771
               

               Cow position:
               chr10:34285873-34286258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 215
               

               Conread position:
               437-769
               

               Cow position:
               chr10:28929286-28928963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               104, 17
               

               Conread position:
               459-769
               

               Cow position:
               chr10:9593268-9592960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               62, 140
               

               Conread position:
               480-773
               

               Cow position:
               chr10:186802-187099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               488-773
               

               Cow position:
               chr10:1378224-1378509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 111
               

               Conread position:
               501-773
               

               Cow position:
               chr10:39779388-39779118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 92
               

               Conread position:
               524-771
               

               Cow position:
               chr10:27664510-27664264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               14, 76
               

               Conread position:
               528-773
               

               Cow position:
               chr10:32701489-32701728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               13, 64
               

               Conread position:
               563-771
               

               Cow position:
               chr10:47083974-47083768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               109, 36
               

               Conread position:
               16-771
               

               Cow position:
               chr11:66727243-66728015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               784
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 80
               

               Conread position:
               24-486
               

               Cow position:
               chr11:28063720-28064181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 11
               

               Conread position:
               44-771
               

               Cow position:
               chr11:28229854-28229118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               537
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 32
               

               Conread position:
               44-773
               

               Cow position:
               chr11:10090575-10091319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               754
               

               Alignm identity:
               575
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 9
               

               Conread position:
               67-660
               

               Cow position:
               chr11:62229129-62229709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 25
               

               Conread position:
               78-773
               

               Cow position:
               chr11:4027617-4026920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 19
               

               Conread position:
               93-426
               

               Cow position:
               chr11:11677310-11677641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 42
               

               Conread position:
               98-221
               

               Cow position:
               chr11:256224-256099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               34, 7
               

               Conread position:
               98-773
               

               Cow position:
               chr11:31926134-31926810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 48
               

               Conread position:
               99-726
               

               Cow position:
               chr11:67866710-67866052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               671
               

               Alignm identity:
               433
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               28, 9
               

               Conread position:
               99-771
               

               Cow position:
               chr11:10847406-10848089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:11988071-11988752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:12358461-12357775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               529
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 48
               

               Conread position:
               99-773
               

               Cow position:
               chr11:19102522-19101855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr11:23877266-23877935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               99-773
               

               Cow position:
               chr11:24393281-24393956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 410
               

               Conread position:
               99-773
               

               Cow position:
               chr11:26124967-26124286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:28054635-28053971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:38835467-38834795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:41170728-41170055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:44157289-44156607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:44251763-44252436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr11:53432102-53431418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr11:58134351-58135034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               100-591
               

               Cow position:
               chr11:84389589-84390097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 254
               

               Conread position:
               100-773
               

               Cow position:
               chr11:76374240-76373579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               105-247
               

               Cow position:
               chr11:8267573-8267425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               105-247
               

               Cow position:
               chr11:12351096-12350951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               37, 50
               

               Conread position:
               105-273
               

               Cow position:
               chr11:54209581-54209751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               62, 125
               

               Conread position:
               105-485
               

               Cow position:
               chr11:22934770-22935149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 87
               

               Conread position:
               105-773
               

               Cow position:
               chr11:9157185-9156517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 11
               

               Conread position:
               106-773
               

               Cow position:
               chr11:12093530-12094206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 15
               

               Conread position:
               108-773
               

               Cow position:
               chr11:43514661-43513992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               114-481
               

               Cow position:
               chr11:17326248-17326610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               129, 7
               

               Conread position:
               114-769
               

               Cow position:
               chr11:31874800-31874151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               672
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 173
               

               Conread position:
               115-251
               

               Cow position:
               chr11:30125266-30125127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               116-562
               

               Cow position:
               chr11:9606601-9606148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 144
               

               Conread position:
               119-771
               

               Cow position:
               chr11:3492985-3493633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 190
               

               Conread position:
               119-771
               

               Cow position:
               chr11:67846597-67845931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               671
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 497
               

               Conread position:
               121-773
               

               Cow position:
               chr11:85393826-85393174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               667
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 138
               

               Conread position:
               127-771
               

               Cow position:
               chr11:73477292-73477947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 485
               

               Conread position:
               127-773
               

               Cow position:
               chr11:1496090-1495448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               661
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 38
               

               Conread position:
               128-444
               

               Cow position:
               chr11:8245300-8245624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               130-772
               

               Cow position:
               chr11:46246568-46245920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               667
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 41
               

               Conread position:
               137-771
               

               Cow position:
               chr11:9734669-9734041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 322
               

               Conread position:
               137-771
               

               Cow position:
               chr11:28108144-28108775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 347
               

               Conread position:
               155-672
               

               Cow position:
               chr11:7116231-7116763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 75
               

               Conread position:
               173-773
               

               Cow position:
               chr11:40775962-40775371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 112
               

               Conread position:
               176-594
               

               Cow position:
               chr11:25866860-25866478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               53, 23
               

               Conread position:
               187-773
               

               Cow position:
               chr11:36762809-36763391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 140
               

               Conread position:
               192-766
               

               Cow position:
               chr11:42432203-42432768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 54
               

               Conread position:
               202-773
               

               Cow position:
               chr11:71329656-71330230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 213
               

               Conread position:
               237-673
               

               Cow position:
               chr11:44492174-44491735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 97
               

               Conread position:
               276-773
               

               Cow position:
               chr11:9216934-9216442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 87
               

               Conread position:
               378-771
               

               Cow position:
               chr11:47760037-47759645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 8
               

               Conread position:
               380-751
               

               Cow position:
               chr11:27670083-27669714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               90, 33
               

               Conread position:
               381-773
               

               Cow position:
               chr11:54485166-54484773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 217
               

               Conread position:
               386-773
               

               Cow position:
               chr11:26070793-26070417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               388-750
               

               Cow position:
               chr11:32480923-32480560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               398-773
               

               Cow position:
               chr11:71982260-71981887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 7
               

               Conread position:
               429-773
               

               Cow position:
               chr11:4270093-4269762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               35, 173
               

               Conread position:
               434-771
               

               Cow position:
               chr11:19063774-19063434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 170
               

               Conread position:
               441-592
               

               Cow position:
               chr11:38219963-38219812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               79, 95
               

               Conread position:
               478-720
               

               Cow position:
               chr11:22935429-22935661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               41, 57
               

               Conread position:
               488-773
               

               Cow position:
               chr11:4057121-4056836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               490-771
               

               Cow position:
               chr11:5342564-5342283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               31, 111
               

               Conread position:
               502-771
               

               Cow position:
               chr11:30252567-30252836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               17, 99
               

               Conread position:
               551-773
               

               Cow position:
               chr11:9601912-9601692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               563-773
               

               Cow position:
               chr11:30123413-30123205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 39
               

               Conread position:
               593-754
               

               Cow position:
               chr11:29232553-29232388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               611-769
               

               Cow position:
               chr11:4063382-4063231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               611-773
               

               Cow position:
               chr11:1489664-1489506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               64, 37
               

               Conread position:
               621-766
               

               Cow position:
               chr11:52657586-52657446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               6, 52
               

               Conread position:
               646-773
               

               Cow position:
               chr11:21902582-21902455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               34, 103
               

               Conread position:
               680-773
               

               Cow position:
               chr11:84390093-84390185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               94
               

               Alignm identity:
               82
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               98-754
               

               Cow position:
               chr12:25100811-25100147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               672
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 24
               

               Conread position:
               99-517
               

               Cow position:
               chr12:42859576-42859149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr12:1402741-1403421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr12:6406400-6405715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr12:11098493-11099163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-774
               

               Cow position:
               chr12:22205497-22204814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               100-765
               

               Cow position:
               chr12:10485301-10485965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 61
               

               Conread position:
               101-773
               

               Cow position:
               chr12:21198211-21198889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 101
               

               Conread position:
               103-773
               

               Cow position:
               chr12:28765766-28765090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 23
               

               Conread position:
               105-226
               

               Cow position:
               chr12:45261879-45262003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               105-773
               

               Cow position:
               chr12:14662377-14661701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 305
               

               Conread position:
               116-246
               

               Cow position:
               chr12:21942029-21942162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               121-773
               

               Cow position:
               chr12:27855687-27855037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               665
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 26
               

               Conread position:
               140-771
               

               Cow position:
               chr12:3361188-3361852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 497
               

               Conread position:
               203-773
               

               Cow position:
               chr12:601004-600431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 212
               

               Conread position:
               215-747
               

               Cow position:
               chr12:36448942-36449478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 229
               

               Conread position:
               273-752
               

               Cow position:
               chr12:21942159-21942642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 213
               

               Conread position:
               275-771
               

               Cow position:
               chr12:21209090-21209579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 29
               

               Conread position:
               294-767
               

               Cow position:
               chr12:25263026-25262545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 311
               

               Conread position:
               459-647
               

               Cow position:
               chr12:1780941-1780756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               510-757
               

               Cow position:
               chr12:25554707-25554465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               11, 62
               

               Conread position:
               511-771
               

               Cow position:
               chr12:41380348-41380606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               27, 6
               

               Conread position:
               517-773
               

               Cow position:
               chr12:42858863-42858608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               24, 78
               

               Conread position:
               527-773
               

               Cow position:
               chr12:27932222-27931981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               14, 70
               

               Conread position:
               554-716
               

               Cow position:
               chr12:32678236-32678076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               130, 42
               

               Conread position:
               598-773
               

               Cow position:
               chr12:11580499-11580672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 114
               

               Conread position:
               599-761
               

               Cow position:
               chr12:21127910-21128070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 84
               

               Conread position:
               25-773
               

               Cow position:
               chr13:34937438-34938173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               770
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 10
               

               Conread position:
               43-776
               

               Cow position:
               chr13:43983110-43982387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               753
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 113
               

               Conread position:
               48-422
               

               Cow position:
               chr13:26844076-26844441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               306, 44
               

               Conread position:
               50-774
               

               Cow position:
               chr13:20542071-20541336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               751
               

               Alignm identity:
               557
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 27
               

               Conread position:
               57-773
               

               Cow position:
               chr13:3654336-3653611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               737
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 29
               

               Conread position:
               65-671
               

               Cow position:
               chr13:35030541-35031143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 61
               

               Conread position:
               80-773
               

               Cow position:
               chr13:4483807-4484502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 5
               

               Conread position:
               90-773
               

               Cow position:
               chr13:6668100-6667425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               695
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 512
               

               Conread position:
               93-380
               

               Cow position:
               chr13:11064145-11063869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 43
               

               Conread position:
               99-667
               

               Cow position:
               chr13:35757271-35757848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               99-773
               

               Cow position:
               chr13:1593125-1592446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr13:15924354-15923671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr13:30238276-30238945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               532
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr13:32737792-32737115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               103-531
               

               Cow position:
               chr13:27922200-27921767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 37
               

               Conread position:
               105-248
               

               Cow position:
               chr13:34693200-34693347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               105-361
               

               Cow position:
               chr13:22766058-22766318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 225
               

               Conread position:
               105-773
               

               Cow position:
               chr13:23003274-23002589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               697
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               105-773
               

               Cow position:
               chr13:30303311-30303992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 149
               

               Conread position:
               106-266
               

               Cow position:
               chr13:11799723-11799557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               59, 89
               

               Conread position:
               110-544
               

               Cow position:
               chr13:34868782-34869227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 211
               

               Conread position:
               117-771
               

               Cow position:
               chr13:30244638-30243974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 412
               

               Conread position:
               121-771
               

               Cow position:
               chr13:60466380-60467033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               661
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 88
               

               Conread position:
               127-771
               

               Cow position:
               chr13:17308525-17309179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 125
               

               Conread position:
               130-773
               

               Cow position:
               chr13:34325505-34324851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               660
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 380
               

               Conread position:
               162-773
               

               Cow position:
               chr13:15451017-15450417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 27
               

               Conread position:
               162-773
               

               Cow position:
               chr13:15520406-15519798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 30
               

               Conread position:
               168-773
               

               Cow position:
               chr13:57023802-57024407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 12
               

               Conread position:
               176-773
               

               Cow position:
               chr13:31612201-31611598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 337
               

               Conread position:
               176-773
               

               Cow position:
               chr13:32545484-32546089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 354
               

               Conread position:
               213-773
               

               Cow position:
               chr13:13900010-13900577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 143
               

               Conread position:
               354-773
               

               Cow position:
               chr13:16255095-16254675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 126
               

               Conread position:
               380-773
               

               Cow position:
               chr13:30277938-30278326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               78, 27
               

               Conread position:
               391-773
               

               Cow position:
               chr13:34029739-34030119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 55
               

               Conread position:
               415-773
               

               Cow position:
               chr13:60700309-60699951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               112, 54
               

               Conread position:
               459-772
               

               Cow position:
               chr13:25692090-25692392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               61, 132
               

               Conread position:
               465-771
               

               Cow position:
               chr13:3056735-3056429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               56, 136
               

               Conread position:
               466-771
               

               Cow position:
               chr13:34910461-34910159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 55
               

               Conread position:
               488-773
               

               Cow position:
               chr13:4941813-4942093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               33, 109
               

               Conread position:
               488-773
               

               Cow position:
               chr13:33335886-33335607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               39, 111
               

               Conread position:
               517-771
               

               Cow position:
               chr13:677473-677723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               21, 86
               

               Conread position:
               517-771
               

               Cow position:
               chr13:34424215-34424468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               21, 82
               

               Conread position:
               520-773
               

               Cow position:
               chr13:34765989-34765745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               23, 50
               

               Conread position:
               554-773
               

               Cow position:
               chr13:31730382-31730166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               118, 15
               

               Conread position:
               616-769
               

               Cow position:
               chr13:48358258-48358412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               631-771
               

               Cow position:
               chr13:11798145-11798004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               645-773
               

               Cow position:
               chr13:35757852-35757981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               10-773
               

               Cow position:
               chr14:33236846-33237608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               789
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 40
               

               Conread position:
               25-672
               

               Cow position:
               chr14:45303128-45302492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               664
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 8
               

               Conread position:
               35-773
               

               Cow position:
               chr14:44377648-44378381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               754
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 40
               

               Conread position:
               43-771
               

               Cow position:
               chr14:44257141-44256396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               766
               

               Alignm identity:
               531
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 50
               

               Conread position:
               93-773
               

               Cow position:
               chr14:38146894-38147591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 103
               

               Conread position:
               94-771
               

               Cow position:
               chr14:44776149-44775456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 25
               

               Conread position:
               98-720
               

               Cow position:
               chr14:30596479-30595848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 7
               

               Conread position:
               98-773
               

               Cow position:
               chr14:13864177-13863514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 9
               

               Conread position:
               99-673
               

               Cow position:
               chr14:41408789-41409348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 151
               

               Conread position:
               99-762
               

               Cow position:
               chr14:13778861-13779511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-772
               

               Cow position:
               chr14:5528968-5529650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr14:5511728-5512407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr14:11154260-11153575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               695
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr14:17685302-17685982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr14:19328362-19327684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr14:20782362-20783042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 6
               

               Conread position:
               101-249
               

               Cow position:
               chr14:5201174-5201023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               102-343
               

               Cow position:
               chr14:14308648-14308406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               74, 97
               

               Conread position:
               103-771
               

               Cow position:
               chr14:16273388-16272715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 121
               

               Conread position:
               103-773
               

               Cow position:
               chr14:44226304-44226982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 145
               

               Conread position:
               105-234
               

               Cow position:
               chr14:13273158-13273289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               105-275
               

               Cow position:
               chr14:19620131-19620304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               105-538
               

               Cow position:
               chr14:44685954-44686396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               105-586
               

               Cow position:
               chr14:50110477-50110972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               105-773
               

               Cow position:
               chr14:44287339-44286668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               682
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 35
               

               Conread position:
               105-773
               

               Cow position:
               chr14:45080956-45081633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 111
               

               Conread position:
               110-443
               

               Cow position:
               chr14:17760984-17760653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 237
               

               Conread position:
               111-771
               

               Cow position:
               chr14:13621225-13620570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 143
               

               Conread position:
               117-299
               

               Cow position:
               chr14:13323948-13323766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               55, 80
               

               Conread position:
               117-771
               

               Cow position:
               chr14:9045482-9046156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 414
               

               Conread position:
               117-771
               

               Cow position:
               chr14:23257275-23257934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 485
               

               Conread position:
               121-773
               

               Cow position:
               chr14:17001134-17000476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               667
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               126-382
               

               Cow position:
               chr14:46465009-46465280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               41, 128
               

               Conread position:
               127-771
               

               Cow position:
               chr14:2284265-2284919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 147
               

               Conread position:
               137-771
               

               Cow position:
               chr14:750506-751147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 117
               

               Conread position:
               137-771
               

               Cow position:
               chr14:33393843-33393206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               651
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 80
               

               Conread position:
               157-773
               

               Cow position:
               chr14:12610419-12611033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 68
               

               Conread position:
               164-773
               

               Cow position:
               chr14:45206282-45206907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 172
               

               Conread position:
               166-593
               

               Cow position:
               chr14:29777530-29777091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 257
               

               Conread position:
               166-673
               

               Cow position:
               chr14:43557945-43558455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 67
               

               Conread position:
               167-773
               

               Cow position:
               chr14:45189796-45189196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               168-773
               

               Cow position:
               chr14:48825269-48825866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 279
               

               Conread position:
               239-773
               

               Cow position:
               chr14:32446841-32447376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 12
               

               Conread position:
               250-773
               

               Cow position:
               chr14:15276174-15275649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 54
               

               Conread position:
               280-771
               

               Cow position:
               chr14:33401775-33402266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 151
               

               Conread position:
               312-773
               

               Cow position:
               chr14:190081-190550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 288
               

               Conread position:
               334-773
               

               Cow position:
               chr14:12899241-12899678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 80
               

               Conread position:
               338-771
               

               Cow position:
               chr14:50393889-50393475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               295
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               132, 233
               

               Conread position:
               343-771
               

               Cow position:
               chr14:16344003-16343568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 264
               

               Conread position:
               352-773
               

               Cow position:
               chr14:16919555-16919134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 248
               

               Conread position:
               380-773
               

               Cow position:
               chr14:17760677-17760297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 48
               

               Conread position:
               380-773
               

               Cow position:
               chr14:44288961-44288572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 121
               

               Conread position:
               385-773
               

               Cow position:
               chr14:35385876-35385490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 194
               

               Conread position:
               418-773
               

               Cow position:
               chr14:44131125-44131467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 106
               

               Conread position:
               433-773
               

               Cow position:
               chr14:2294515-2294857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               235
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               34, 156
               

               Conread position:
               441-773
               

               Cow position:
               chr14:44676372-44676698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               20, 122
               

               Conread position:
               446-727
               

               Cow position:
               chr14:48602071-48601790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               74, 152
               

               Conread position:
               458-773
               

               Cow position:
               chr14:11561747-11561447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               222, 63
               

               Conread position:
               468-773
               

               Cow position:
               chr14:45028730-45028419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               16, 129
               

               Conread position:
               482-773
               

               Cow position:
               chr14:45711423-45711132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               37, 117
               

               Conread position:
               487-773
               

               Cow position:
               chr14:40341353-40341634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 116
               

               Conread position:
               488-774
               

               Cow position:
               chr14:47655606-47655888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               30, 108
               

               Conread position:
               489-773
               

               Cow position:
               chr14:35365951-35365675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               497-773
               

               Cow position:
               chr14:37224498-37224774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               24, 102
               

               Conread position:
               507-771
               

               Cow position:
               chr14:38531138-38530878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               12, 70
               

               Conread position:
               517-773
               

               Cow position:
               chr14:46465652-46465903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               24, 54
               

               Conread position:
               541-773
               

               Cow position:
               chr14:33677416-33677646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               22, 62
               

               Conread position:
               558-755
               

               Cow position:
               chr14:29580548-29580740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               566-757
               

               Cow position:
               chr14:13273981-13274170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               49, 23
               

               Conread position:
               611-773
               

               Cow position:
               chr14:40169293-40169134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               64, 109
               

               Conread position:
               627-773
               

               Cow position:
               chr14:29775781-29775634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               23-761
               

               Cow position:
               chr15:9429771-9430513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               758
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 26
               

               Conread position:
               25-472
               

               Cow position:
               chr15:24794192-24794636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 33
               

               Conread position:
               43-745
               

               Cow position:
               chr15:40105714-40106397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 52
               

               Conread position:
               49-316
               

               Cow position:
               chr15:36642785-36643059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 21
               

               Conread position:
               49-771
               

               Cow position:
               chr15:21449551-21450245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               735
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               49-773
               

               Cow position:
               chr15:13674387-13675087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               467
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               90, 43
               

               Conread position:
               55-772
               

               Cow position:
               chr15:1237545-1238262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 37
               

               Conread position:
               56-673
               

               Cow position:
               chr15:35735428-35736063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 146
               

               Conread position:
               93-771
               

               Cow position:
               chr15:4961546-4962217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 136
               

               Conread position:
               95-771
               

               Cow position:
               chr15:20356992-20356338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 20
               

               Conread position:
               97-694
               

               Cow position:
               chr15:1763995-1764593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 8
               

               Conread position:
               98-389
               

               Cow position:
               chr15:6593038-6592757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 7
               

               Conread position:
               99-771
               

               Cow position:
               chr15:7837151-7837833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr15:4922058-4922734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr15:8099395-8100055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr15:15347212-15346529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr15:18332921-18332244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr15:19738146-19737464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               529
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               99-773
               

               Cow position:
               chr15:21665839-21665161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr15:31358793-31359462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-774
               

               Cow position:
               chr15:32494479-32493801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 6
               

               Conread position:
               100-636
               

               Cow position:
               chr15:6623002-6623532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               100-771
               

               Cow position:
               chr15:7966057-7965364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 16
               

               Conread position:
               100-773
               

               Cow position:
               chr15:2076556-2077243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               100-773
               

               Cow position:
               chr15:8750333-8750987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               682
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 131
               

               Conread position:
               101-761
               

               Cow position:
               chr15:7544790-7545436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               673
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 57
               

               Conread position:
               103-486
               

               Cow position:
               chr15:12421256-12420862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 129
               

               Conread position:
               103-759
               

               Cow position:
               chr15:37392401-37393063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               672
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 206
               

               Conread position:
               103-771
               

               Cow position:
               chr15:328339-329002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 13
               

               Conread position:
               103-773
               

               Cow position:
               chr15:6156044-6155358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 512
               

               Conread position:
               104-773
               

               Cow position:
               chr15:7934241-7934914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 74
               

               Conread position:
               105-228
               

               Cow position:
               chr15:6553944-6553819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               105-228
               

               Cow position:
               chr15:38979840-38979968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               105-289
               

               Cow position:
               chr15:4733771-4733954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               38, 135
               

               Conread position:
               105-711
               

               Cow position:
               chr15:7894319-7893717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               105-763
               

               Cow position:
               chr15:10888517-10889192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 134
               

               Conread position:
               105-773
               

               Cow position:
               chr15:524949-524274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 310
               

               Conread position:
               105-774
               

               Cow position:
               chr15:315947-315273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 32
               

               Conread position:
               106-485
               

               Cow position:
               chr15:17292353-17292745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 13
               

               Conread position:
               106-771
               

               Cow position:
               chr15:4671344-4672017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 13
               

               Conread position:
               115-272
               

               Cow position:
               chr15:4682152-4682312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               116-773
               

               Cow position:
               chr15:24295020-24295683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               672
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 19
               

               Conread position:
               117-343
               

               Cow position:
               chr15:2011999-2012227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               21, 35
               

               Conread position:
               119-771
               

               Cow position:
               chr15:4196381-4197045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 494
               

               Conread position:
               126-756
               

               Cow position:
               chr15:7234233-7234830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 107
               

               Conread position:
               127-771
               

               Cow position:
               chr15:3888807-3889461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               665
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               127-771
               

               Cow position:
               chr15:4142890-4142235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               660
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 169
               

               Conread position:
               137-736
               

               Cow position:
               chr15:36970862-36971465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 133
               

               Conread position:
               162-773
               

               Cow position:
               chr15:2762657-2763251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 14
               

               Conread position:
               166-773
               

               Cow position:
               chr15:369186-368582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 139
               

               Conread position:
               168-771
               

               Cow position:
               chr15:35647690-35647085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 256
               

               Conread position:
               168-773
               

               Cow position:
               chr15:5980333-5980933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 337
               

               Conread position:
               168-773
               

               Cow position:
               chr15:6078734-6079338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               170-771
               

               Cow position:
               chr15:14582372-14581777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 36
               

               Conread position:
               174-771
               

               Cow position:
               chr15:4812585-4813182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 162
               

               Conread position:
               218-771
               

               Cow position:
               chr15:6553793-6553244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 219
               

               Conread position:
               223-750
               

               Cow position:
               chr15:8057324-8057856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               233-777
               

               Cow position:
               chr15:579505-580025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 86
               

               Conread position:
               234-764
               

               Cow position:
               chr15:38980708-38981245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 368
               

               Conread position:
               234-773
               

               Cow position:
               chr15:53137178-53136635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 46
               

               Conread position:
               251-766
               

               Cow position:
               chr15:35833485-35833997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               334
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               57, 89
               

               Conread position:
               269-570
               

               Cow position:
               chr15:32203737-32204036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 6
               

               Conread position:
               274-761
               

               Cow position:
               chr15:4678384-4678860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 136
               

               Conread position:
               279-773
               

               Cow position:
               chr15:4685684-4686183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 336
               

               Conread position:
               308-773
               

               Cow position:
               chr15:6068058-6067593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 12
               

               Conread position:
               323-726
               

               Cow position:
               chr15:31862426-31862024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 159
               

               Conread position:
               325-774
               

               Cow position:
               chr15:1667840-1668311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               314
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               59, 273
               

               Conread position:
               377-773
               

               Cow position:
               chr15:17218073-17217674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 225
               

               Conread position:
               380-771
               

               Cow position:
               chr15:11597818-11597424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 224
               

               Conread position:
               380-773
               

               Cow position:
               chr15:6592435-6592033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 227
               

               Conread position:
               380-773
               

               Cow position:
               chr15:8811829-8811439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 144
               

               Conread position:
               380-773
               

               Cow position:
               chr15:9003930-9003537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 167
               

               Conread position:
               386-665
               

               Cow position:
               chr15:2012248-2012525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               76, 36
               

               Conread position:
               388-716
               

               Cow position:
               chr15:9739169-9738843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               77, 218
               

               Conread position:
               422-773
               

               Cow position:
               chr15:9912920-9913278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 178
               

               Conread position:
               431-771
               

               Cow position:
               chr15:2801699-2801359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               39, 57
               

               Conread position:
               459-762
               

               Cow position:
               chr15:7260871-7261173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               76, 112
               

               Conread position:
               482-773
               

               Cow position:
               chr15:4765472-4765762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               58, 109
               

               Conread position:
               488-771
               

               Cow position:
               chr15:51217907-51218187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               33, 13
               

               Conread position:
               488-773
               

               Cow position:
               chr15:4386060-4386345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               208
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               33, 105
               

               Conread position:
               491-773
               

               Cow position:
               chr15:11625998-11626274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               29, 61
               

               Conread position:
               510-769
               

               Cow position:
               chr15:2016892-2017150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               10, 34
               

               Conread position:
               531-773
               

               Cow position:
               chr15:1300460-1300221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               8, 67
               

               Conread position:
               552-772
               

               Cow position:
               chr15:6368589-6368374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               128, 45
               

               Conread position:
               25-485
               

               Cow position:
               chr16:42739617-42739154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 8
               

               Conread position:
               36-492
               

               Cow position:
               chr16:49235331-49234869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 26
               

               Conread position:
               48-773
               

               Cow position:
               chr16:29033550-29034290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               753
               

               Alignm identity:
               569
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               49-365
               

               Cow position:
               chr16:5890028-5890339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               70, 43
               

               Conread position:
               49-412
               

               Cow position:
               chr16:25156380-25155998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 6
               

               Conread position:
               49-765
               

               Cow position:
               chr16:25257439-25258180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 47
               

               Conread position:
               66-760
               

               Cow position:
               chr16:23807940-23808662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 26
               

               Conread position:
               93-751
               

               Cow position:
               chr16:47563960-47564583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               671
               

               Alignm identity:
               440
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               22, 113
               

               Conread position:
               97-664
               

               Cow position:
               chr16:9930494-9931065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 21
               

               Conread position:
               98-465
               

               Cow position:
               chr16:2239181-2238827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 6
               

               Conread position:
               98-771
               

               Cow position:
               chr16:34529880-34530553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 7
               

               Conread position:
               98-773
               

               Cow position:
               chr16:31592348-31591677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 7
               

               Conread position:
               99-768
               

               Cow position:
               chr16:25441184-25441864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               99-768
               

               Cow position:
               chr16:25457905-25457226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               99-773
               

               Cow position:
               chr16:407471-406797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr16:1567894-1567210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr16:2727728-2727046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr16:10437801-10438494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr16:12538365-12537685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               99-773
               

               Cow position:
               chr16:25341525-25342211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 38
               

               Conread position:
               99-773
               

               Cow position:
               chr16:26663309-26663992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr16:27734232-27733556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               99-773
               

               Cow position:
               chr16:28471542-28470859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               99-773
               

               Cow position:
               chr16:40296618-40295934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               100-773
               

               Cow position:
               chr16:23982871-23983539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               103-759
               

               Cow position:
               chr16:29046584-29047248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               672
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 209
               

               Conread position:
               103-773
               

               Cow position:
               chr16:8816542-8815864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 34
               

               Conread position:
               105-773
               

               Cow position:
               chr16:2483577-2482897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 102
               

               Conread position:
               106-773
               

               Cow position:
               chr16:2411401-2410724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               682
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 31
               

               Conread position:
               113-771
               

               Cow position:
               chr16:25085214-25085856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 181
               

               Conread position:
               117-771
               

               Cow position:
               chr16:5661420-5662082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 136
               

               Conread position:
               119-771
               

               Cow position:
               chr16:4302761-4302101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 186
               

               Conread position:
               120-771
               

               Cow position:
               chr16:45798155-45798803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               665
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 140
               

               Conread position:
               127-771
               

               Cow position:
               chr16:25188221-25188888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               675
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 39
               

               Conread position:
               163-773
               

               Cow position:
               chr16:14666188-14665568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 366
               

               Conread position:
               210-773
               

               Cow position:
               chr16:4479312-4478741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 396
               

               Conread position:
               218-771
               

               Cow position:
               chr16:28197998-28197437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 14
               

               Conread position:
               232-773
               

               Cow position:
               chr16:15476537-15477083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 205
               

               Conread position:
               241-773
               

               Cow position:
               chr16:49256488-49255979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 10
               

               Conread position:
               252-773
               

               Cow position:
               chr16:30049211-30049730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 22
               

               Conread position:
               258-773
               

               Cow position:
               chr16:1431906-1432427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 280
               

               Conread position:
               380-771
               

               Cow position:
               chr16:21185464-21185854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 50
               

               Conread position:
               380-773
               

               Cow position:
               chr16:41166919-41166528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 22
               

               Conread position:
               381-674
               

               Cow position:
               chr16:26374441-26374731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 32
               

               Conread position:
               381-773
               

               Cow position:
               chr16:52592249-52591866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               272
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               80, 5
               

               Conread position:
               385-773
               

               Cow position:
               chr16:23536035-23535649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               418-774
               

               Cow position:
               chr16:18498403-18498045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 36
               

               Conread position:
               482-773
               

               Cow position:
               chr16:16271188-16270898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               36, 116
               

               Conread position:
               488-773
               

               Cow position:
               chr16:5484693-5484973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               489-771
               

               Cow position:
               chr16:25255426-25255705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 109
               

               Conread position:
               489-773
               

               Cow position:
               chr16:15185034-15185314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               52, 32
               

               Conread position:
               507-773
               

               Cow position:
               chr16:42736416-42736159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               12, 77
               

               Conread position:
               517-721
               

               Cow position:
               chr16:15567022-15567225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               24, 79
               

               Conread position:
               517-773
               

               Cow position:
               chr16:23252446-23252192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               24, 6
               

               Conread position:
               526-773
               

               Cow position:
               chr16:15493499-15493745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               15, 72
               

               Conread position:
               529-771
               

               Cow position:
               chr16:51405936-51405711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               12, 56
               
537-756UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr16:7463679-7463896 (view  custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               135, 60
               
537-773UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr16:20201925-20202158 (view  custom track)

               
               
               
Alignm length: 238

               
               
               
Alignm identity: 171

               
               
               
Alignm E-value: 2e-36

               
               
               
Alignm gaps (pig, cow): 143, 59
554-771UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr16:4305237-4305024 (view  custom track)

               
               
               
Alignm length: 219

               
               
               
Alignm identity: 148

               
               
               
Alignm E-value: 2e-22

               
               
               
Alignm gaps (pig, cow): 118, 45

               
               
               Conread position:597-773
               
               
               Cow position:chr16:49221862-49221690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:617-773
               
               
               Cow position:chr16:1860307-1860464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:44-771
               
               
               Cow position:chr17:1657761-1657041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:93-430
               
               
               Cow position:chr17:42265053-42265395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:99-771
               
               
               Cow position:chr17:14894291-14894973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr17:2579753-2580432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:99-773
               
               
               Cow position:chr17:3642698-3642021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr17:6259982-6260671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr17:11087586-11086908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr17:16857395-16856704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:99-773
               
               
               Cow position:chr17:18103547-18102876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr17:40804955-40805623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr17:19019711-19020386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:105-247
               
               
               Cow position:chr17:20073103-20072957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:105-737
               
               
               Cow position:chr17:22132371-22133004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 357

               
               
               Conread position:105-773
               
               
               Cow position:chr17:24029857-24029190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 189

               
               
               Conread position:108-245
               
               
               Cow position:chr17:6001267-6001129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 125

               
               
               Conread position:113-773
               
               
               Cow position:chr17:14040880-14040226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:115-773
               
               
               Cow position:chr17:6068712-6069368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:116-771
               
               
               Cow position:chr17:15156817-15156157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:116-773
               
               
               Cow position:chr17:20087590-20086938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:119-771
               
               
               Cow position:chr17:14216878-14216223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 190

               
               
               Conread position:126-773
               
               
               Cow position:chr17:1880255-1880911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:127-771
               
               
               Cow position:chr17:2262260-2262917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 486

               
               
               Conread position:127-771
               
               
               Cow position:chr17:31767881-31767229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 480

               
               
               Conread position:127-771
               
               
               Cow position:chr17:34156286-34156930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 339

               
               
               Conread position:166-773
               
               
               Cow position:chr17:5226822-5227427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 204

               
               
               Conread position:166-773
               
               
               Cow position:chr17:15324027-15324643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 440

               
               
               Conread position:167-594
               
               
               Cow position:chr17:151671-151236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:175-774
               
               
               Cow position:chr17:38873830-38874443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:380
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 152

               
               
               Conread position:215-765
               
               
               Cow position:chr17:20402659-20403224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:279-763
               
               
               Cow position:chr17:6001132-6000642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:297-771
               
               
               Cow position:chr17:43988831-43989310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 304

               
               
               Conread position:323-728
               
               
               Cow position:chr17:28018767-28019158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 59

               
               
               Conread position:352-773
               
               
               Cow position:chr17:16899915-16899495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 212

               
               
               Conread position:380-589
               
               
               Cow position:chr17:14238881-14239094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:383-750
               
               
               Cow position:chr17:20081435-20081076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 91

               
               
               Conread position:385-773
               
               
               Cow position:chr17:19268407-19268015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:400-687
               
               
               Cow position:chr17:15371399-15371693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 211

               
               
               Conread position:405-773
               
               
               Cow position:chr17:4942286-4941916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 197

               
               
               Conread position:414-773
               
               
               Cow position:chr17:20100021-20099663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:488-773
               
               
               Cow position:chr17:15851221-15851503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:497-720
               
               
               Cow position:chr17:2174379-2174601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:555-754
               
               
               Cow position:chr17:22558586-22558781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:598-762
               
               
               Cow position:chr17:14307215-14307049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:616-773
               
               
               Cow position:chr17:54798-54640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:619-773
               
               
               Cow position:chr17:1787280-1787123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:619-773
               
               
               Cow position:chr17:14240159-14240312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:93-505
               
               
               Cow position:chr18:29765307-29765734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:98-223
               
               
               Cow position:chr18:16534323-16534449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:99-773
               
               
               Cow position:chr18:14130735-14131416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:99-773
               
               
               Cow position:chr18:16176272-16175593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr18:25351096-25351779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr18:27837971-27837287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr18:32652548-32653240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr18:36508678-36509365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr18:40478728-40479411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr18:52651265-52651935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 6

               
               
               Conread position:100-248
               
               
               Cow position:chr18:24700767-24700616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:100-450
               
               
               Cow position:chr18:54003867-54004197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 5

               
               
               Conread position:100-762
               
               
               Cow position:chr18:33750359-33751022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:104-773
               
               
               Cow position:chr18:33269174-33269844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:105-749
               
               
               Cow position:chr18:33336213-33336875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 297

               
               
               Conread position:105-773
               
               
               Cow position:chr18:54023774-54023111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:106-755
               
               
               Cow position:chr18:41840471-41839802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:106-773
               
               
               Cow position:chr18:23798001-23798672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:113-773
               
               
               Cow position:chr18:54171180-54170513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 199

               
               
               Conread position:119-771
               
               
               Cow position:chr18:11274750-11274085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 495

               
               
               Conread position:119-771
               
               
               Cow position:chr18:51342042-51342706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 413

               
               
               Conread position:121-771
               
               
               Cow position:chr18:28973535-28972863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:121-771
               
               
               Cow position:chr18:33953217-33952560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:127-671
               
               
               Cow position:chr18:24040366-24039805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 480

               
               
               Conread position:148-773
               
               
               Cow position:chr18:16088539-16089163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 267

               
               
               Conread position:155-771
               
               
               Cow position:chr18:51660741-51661362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 182

               
               
               Conread position:380-773
               
               
               Cow position:chr18:4946710-4947077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:488-773
               
               
               Cow position:chr18:37506699-37506984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:497-773
               
               
               Cow position:chr18:32768408-32768681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:531-773
               
               
               Cow position:chr18:51481669-51481907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:565-773
               
               
               Cow position:chr18:27988008-27988214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:8-773
               
               
               Cow position:chr19:3138185-3138957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:34-204
               
               
               Cow position:chr19:43294-43471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:35-390
               
               
               Cow position:chr19:352374-352010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:44-773
               
               
               Cow position:chr19:32182793-32182053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:47-541
               
               
               Cow position:chr19:162813-162310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:49-215
               
               
               Cow position:chr19:35377454-35377629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:49-511
               
               
               Cow position:chr19:39669218-39668746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:57-771
               
               
               Cow position:chr19:27052209-27051485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:91-773
               
               
               Cow position:chr19:674908-674221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:99-660
               
               
               Cow position:chr19:7488663-7489228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-670
               
               
               Cow position:chr19:5729179-5729752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr19:33873776-33874453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr19:33941960-33942632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr19:39185196-39184511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr19:39390858-39391536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr19:28581310-28580634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:101-773
               
               
               Cow position:chr19:341572-342246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:103-736
               
               
               Cow position:chr19:893256-892613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 267

               
               
               Conread position:106-773
               
               
               Cow position:chr19:40852080-40851422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:113-771
               
               
               Cow position:chr19:772951-773623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 216

               
               
               Conread position:116-773
               
               
               Cow position:chr19:2274020-2273358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:121-660
               
               
               Cow position:chr19:204327-204875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 296

               
               
               Conread position:127-771
               
               
               Cow position:chr19:32211703-32211050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:189-771
               
               
               Cow position:chr19:5901060-5900477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:236-773
               
               
               Cow position:chr19:12773602-12774142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 68

               
               
               Conread position:304-773
               
               
               Cow position:chr19:28406152-28405680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:344-756
               
               
               Cow position:chr19:53844166-53844603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 277

               
               
               Conread position:398-774
               
               
               Cow position:chr19:347668-347303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:439-771
               
               
               Cow position:chr19:255918-256258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:440-771
               
               
               Cow position:chr19:32193705-32194039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 163

               
               
               Conread position:467-773
               
               
               Cow position:chr19:3112984-3113282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 60

               
               
               Conread position:489-773
               
               
               Cow position:chr19:9707386-9707106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:611-773
               
               
               Cow position:chr19:1588349-1588187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:634-773
               
               
               Cow position:chr19:7489232-7489372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:7-773
               
               
               Cow position:chr2:5485292-5484525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 200

               
               
               Conread position:25-342
               
               
               Cow position:chr2:7902734-7903051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:35-290
               
               
               Cow position:chr2:1362883-1363144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:44-673
               
               
               Cow position:chr2:11692295-11692909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:45-771
               
               
               Cow position:chr2:36053260-36052542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:48-398
               
               
               Cow position:chr2:5963352-5962984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:49-265
               
               
               Cow position:chr2:78742040-78742269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:49-735
               
               
               Cow position:chr2:34564873-34564188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:49-773
               
               
               Cow position:chr2:36030599-36029901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:50-591
               
               
               Cow position:chr2:39622362-39622899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:51-773
               
               
               Cow position:chr2:38373147-38373853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:474
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:64-552
               
               
               Cow position:chr2:11729621-11730113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:65-767
               
               
               Cow position:chr2:40538244-40538936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:66-484
               
               
               Cow position:chr2:28643068-28642642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:84-673
               
               
               Cow position:chr2:199012-198421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:93-773
               
               
               Cow position:chr2:49604736-49605411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:98-223
               
               
               Cow position:chr2:26869058-26869185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:98-765
               
               
               Cow position:chr2:53329546-53330222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:99-771
               
               
               Cow position:chr2:28793043-28793714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:99-773
               
               
               Cow position:chr2:282900-282221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr2:8118328-8119010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:99-773
               
               
               Cow position:chr2:10186441-10185757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr2:12224522-12223844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr2:16900041-16900721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr2:50077388-50078068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:100-773
               
               
               Cow position:chr2:10268867-10268189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 5

               
               
               Conread position:100-773
               
               
               Cow position:chr2:13045913-13045245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:100-773
               
               
               Cow position:chr2:74857028-74857690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:101-772
               
               
               Cow position:chr2:42333061-42332408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:102-354
               
               
               Cow position:chr2:69584834-69584578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:105-331
               
               
               Cow position:chr2:4926379-4926151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 215

               
               
               Conread position:105-761
               
               
               Cow position:chr2:44991499-44990847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:105-762
               
               
               Cow position:chr2:5813588-5812945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 357

               
               
               Conread position:105-762
               
               
               Cow position:chr2:24146656-24147323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 148

               
               
               Conread position:105-771
               
               
               Cow position:chr2:65938653-65937986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:106-773
               
               
               Cow position:chr2:11159327-11158650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:111-771
               
               
               Cow position:chr2:57334989-57335663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 504

               
               
               Conread position:113-539
               
               
               Cow position:chr2:5905059-5904628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:114-484
               
               
               Cow position:chr2:78762264-78762626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:117-771
               
               
               Cow position:chr2:41686316-41686975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:117-773
               
               
               Cow position:chr2:5870549-5869918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:117-773
               
               
               Cow position:chr2:41172478-41173136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:119-671
               
               
               Cow position:chr2:2380909-2381470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:119-771
               
               
               Cow position:chr2:9907715-9908380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 495

               
               
               Conread position:121-768
               
               
               Cow position:chr2:10732954-10732309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:121-771
               
               
               Cow position:chr2:49472052-49472715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 492

               
               
               Conread position:127-671
               
               
               Cow position:chr2:51990436-51989889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 126

               
               
               Conread position:127-771
               
               
               Cow position:chr2:3324752-3324094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 489

               
               
               Conread position:133-771
               
               
               Cow position:chr2:19011165-19011812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 313

               
               
               Conread position:141-602
               
               
               Cow position:chr2:47603419-47602948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 259

               
               
               Conread position:143-773
               
               
               Cow position:chr2:80293122-80292492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 463

               
               
               Conread position:153-773
               
               
               Cow position:chr2:781595-780973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 153

               
               
               Conread position:168-773
               
               
               Cow position:chr2:3835113-3834493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 443

               
               
               Conread position:169-773
               
               
               Cow position:chr2:14822979-14823561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:170-697
               
               
               Cow position:chr2:28620167-28619638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 213

               
               
               Conread position:174-773
               
               
               Cow position:chr2:31297660-31298252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 18

               
               
               Conread position:176-721
               
               
               Cow position:chr2:767572-767063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:363
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:178-698
               
               
               Cow position:chr2:76024653-76025151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:178-773
               
               
               Cow position:chr2:73193011-73193578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 51

               
               
               Conread position:193-771
               
               
               Cow position:chr2:41657063-41657642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:241-773
               
               
               Cow position:chr2:25888658-25888125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):262, 9

               
               
               Conread position:249-773
               
               
               Cow position:chr2:16075574-16075041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 187

               
               
               Conread position:254-771
               
               
               Cow position:chr2:78742520-78743058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:273-773
               
               
               Cow position:chr2:15576871-15576373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 55

               
               
               Conread position:279-773
               
               
               Cow position:chr2:1690945-1691444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 325

               
               
               Conread position:294-773
               
               
               Cow position:chr2:34051154-34051636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:304-718
               
               
               Cow position:chr2:41150618-41151032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 106

               
               
               Conread position:307-773
               
               
               Cow position:chr2:43960725-43961162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 44

               
               
               Conread position:310-773
               
               
               Cow position:chr2:47810845-47811313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:319-719
               
               
               Cow position:chr2:573607-573988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):142, 16

               
               
               Conread position:319-773
               
               
               Cow position:chr2:51617270-51617717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 76

               
               
               Conread position:380-765
               
               
               Cow position:chr2:4927319-4926953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:380-773
               
               
               Cow position:chr2:7903113-7903506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:418-739
               
               
               Cow position:chr2:32655779-32656104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 185

               
               
               Conread position:441-771
               
               
               Cow position:chr2:39421755-39422089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 164

               
               
               Conread position:459-773
               
               
               Cow position:chr2:38274007-38274315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:478-773
               
               
               Cow position:chr2:52062719-52063013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 120

               
               
               Conread position:488-773
               
               
               Cow position:chr2:24924746-24925031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:488-773
               
               
               Cow position:chr2:28649414-28649130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:488-773
               
               
               Cow position:chr2:78762837-78763120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:489-771
               
               
               Cow position:chr2:28640662-28640388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:511-771
               
               
               Cow position:chr2:2356232-2355974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:517-773
               
               
               Cow position:chr2:42670492-42670237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:519-773
               
               
               Cow position:chr2:53554181-53554426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):156, 78

               
               
               Conread position:520-771
               
               
               Cow position:chr2:72598027-72598268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:527-773
               
               
               Cow position:chr2:20902126-20901877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 197

               
               
               Conread position:528-771
               
               
               Cow position:chr2:5904094-5903852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:542-761
               
               
               Cow position:chr2:53744990-53745206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:563-768
               
               
               Cow position:chr2:81257434-81257634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:597-750
               
               
               Cow position:chr2:16290751-16290908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:611-773
               
               
               Cow position:chr2:64769386-64769223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:616-767
               
               
               Cow position:chr2:27317626-27317776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 37

               
               
               Conread position:5-771
               
               
               Cow position:chr20:18315114-18314365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 196

               
               
               Conread position:48-763
               
               
               Cow position:chr20:10855090-10854381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:49-773
               
               
               Cow position:chr20:8215753-8216500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:54-589
               
               
               Cow position:chr20:5230472-5229917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:359
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):113, 38

               
               
               Conread position:99-523
               
               
               Cow position:chr20:28161077-28161512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:99-771
               
               
               Cow position:chr20:27869504-27870188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr20:5535244-5535921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr20:15097570-15096894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr20:21914634-21915305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr20:23799192-23799870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr20:28565289-28564603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr20:29948805-29949490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:99-773
               
               
               Cow position:chr20:30684627-30685305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr20:35124804-35125480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:102-301
               
               
               Cow position:chr20:42076752-42076554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:105-277
               
               
               Cow position:chr20:10845810-10845633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:106-489
               
               
               Cow position:chr20:8003911-8003522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:106-767
               
               
               Cow position:chr20:13763219-13763885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:106-773
               
               
               Cow position:chr20:23469351-23468676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:116-762
               
               
               Cow position:chr20:13679723-13679073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 219

               
               
               Conread position:117-771
               
               
               Cow position:chr20:823084-823743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 318

               
               
               Conread position:118-402
               
               
               Cow position:chr20:7085350-7085068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 153

               
               
               Conread position:119-771
               
               
               Cow position:chr20:38350995-38351658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 176

               
               
               Conread position:142-773
               
               
               Cow position:chr20:42905561-42906184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:179-735
               
               
               Cow position:chr20:22697656-22698211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 56

               
               
               Conread position:240-773
               
               
               Cow position:chr20:12568968-12569507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 359

               
               
               Conread position:254-772
               
               
               Cow position:chr20:14870486-14869964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 136

               
               
               Conread position:288-773
               
               
               Cow position:chr20:24616363-24615882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 103

               
               
               Conread position:298-773
               
               
               Cow position:chr20:13434081-13433613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:313-773
               
               
               Cow position:chr20:17661557-17661087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 294

               
               
               Conread position:337-647
               
               
               Cow position:chr20:13664903-13664584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 221

               
               
               Conread position:381-777
               
               
               Cow position:chr20:37442713-37442306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 146

               
               
               Conread position:382-773
               
               
               Cow position:chr20:37580805-37581204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 152

               
               
               Conread position:391-773
               
               
               Cow position:chr20:7113586-7113205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 209

               
               
               Conread position:423-777
               
               
               Cow position:chr20:22207755-22208113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:469-773
               
               
               Cow position:chr20:10102013-10101719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:488-750
               
               
               Cow position:chr20:25850126-25849864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:493-773
               
               
               Cow position:chr20:28161526-28161806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:527-760
               
               
               Cow position:chr20:7083665-7083434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:551-762
               
               
               Cow position:chr20:16178968-16178768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:551-773
               
               
               Cow position:chr20:12437940-12437723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):121, 44

               
               
               Conread position:611-773
               
               
               Cow position:chr20:872138-871981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:7-773
               
               
               Cow position:chr21:29398-30178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 327

               
               
               Conread position:23-548
               
               
               Cow position:chr21:23812508-23813057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:24-163
               
               
               Cow position:chr21:9870410-9870546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):103, 57

               
               
               Conread position:48-658
               
               
               Cow position:chr21:2710876-2711475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:49-670
               
               
               Cow position:chr21:23861688-23862318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:50-499
               
               
               Cow position:chr21:27565759-27566235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:55-266
               
               
               Cow position:chr21:6109932-6110151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 205

               
               
               Conread position:66-773
               
               
               Cow position:chr21:21915081-21915782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:97-465
               
               
               Cow position:chr21:7267115-7266740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 313

               
               
               Conread position:97-769
               
               
               Cow position:chr21:4077261-4077930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:99-773
               
               
               Cow position:chr21:2883323-2882637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr21:3779192-3779868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr21:10567094-10567771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr21:10850503-10851180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr21:35144182-35144858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr21:40271255-40270574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr21:48116527-48117199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:100-510
               
               
               Cow position:chr21:21925899-21925487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 211

               
               
               Conread position:101-482
               
               
               Cow position:chr21:359794-360166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:103-315
               
               
               Cow position:chr21:2674184-2673971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:105-239
               
               
               Cow position:chr21:2502321-2502458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:116-773
               
               
               Cow position:chr21:146365-147030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:116-773
               
               
               Cow position:chr21:2416654-2417317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 93

               
               
               Conread position:117-770
               
               
               Cow position:chr21:37371681-37372335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 366

               
               
               Conread position:121-673
               
               
               Cow position:chr21:28735676-28736251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 209

               
               
               Conread position:121-773
               
               
               Cow position:chr21:467336-467969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:127-771
               
               
               Cow position:chr21:11453210-11452558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 169

               
               
               Conread position:130-690
               
               
               Cow position:chr21:4093950-4094522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:133-757
               
               
               Cow position:chr21:13313224-13313844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 267

               
               
               Conread position:163-706
               
               
               Cow position:chr21:47949550-47950095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:167-773
               
               
               Cow position:chr21:37148526-37149136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:168-773
               
               
               Cow position:chr21:1287729-1287117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:169-773
               
               
               Cow position:chr21:47941349-47941959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:174-773
               
               
               Cow position:chr21:21944238-21943663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 55

               
               
               Conread position:182-773
               
               
               Cow position:chr21:39087512-39088103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 41

               
               
               Conread position:185-773
               
               
               Cow position:chr21:1192264-1192858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 421

               
               
               Conread position:301-773
               
               
               Cow position:chr21:18817937-18817451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:314-773
               
               
               Cow position:chr21:4184542-4185005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 279

               
               
               Conread position:338-773
               
               
               Cow position:chr21:5840606-5840163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 269

               
               
               Conread position:340-774
               
               
               Cow position:chr21:5015631-5015206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 137

               
               
               Conread position:360-748
               
               
               Cow position:chr21:27149594-27149987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 248

               
               
               Conread position:376-750
               
               
               Cow position:chr21:217756-218129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:405-773
               
               
               Cow position:chr21:37719286-37718919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:415-773
               
               
               Cow position:chr21:28256170-28256534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:437-726
               
               
               Cow position:chr21:26743416-26743133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):238, 84

               
               
               Conread position:441-774
               
               
               Cow position:chr21:20743807-20743478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 81

               
               
               Conread position:480-773
               
               
               Cow position:chr21:49295415-49295708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:488-773
               
               
               Cow position:chr21:26402672-26402387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:488-773
               
               
               Cow position:chr21:27070151-27069867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:488-773
               
               
               Cow position:chr21:33252993-33253283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:489-773
               
               
               Cow position:chr21:27566464-27566739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:496-771
               
               
               Cow position:chr21:360467-360742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:496-773
               
               
               Cow position:chr21:1689334-1689060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:502-671
               
               
               Cow position:chr21:7591124-7591291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:517-773
               
               
               Cow position:chr21:31515479-31515227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:608-773
               
               
               Cow position:chr21:9892826-9892991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:7-440
               
               
               Cow position:chr22:13917964-13918432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:25-650
               
               
               Cow position:chr22:35907224-35906598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:36-773
               
               
               Cow position:chr22:6502958-6502217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:43-689
               
               
               Cow position:chr22:23853852-23854490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:46-247
               
               
               Cow position:chr22:44610103-44610298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:49-382
               
               
               Cow position:chr22:1322321-1322659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:50-773
               
               
               Cow position:chr22:11031951-11032675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:52-485
               
               
               Cow position:chr22:3306206-3305759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:57-546
               
               
               Cow position:chr22:17328526-17328029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:93-777
               
               
               Cow position:chr22:36184002-36184689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:95-492
               
               
               Cow position:chr22:46630802-46630394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 212

               
               
               Conread position:98-241
               
               
               Cow position:chr22:1860991-1861136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:99-757
               
               
               Cow position:chr22:36861277-36860620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-771
               
               
               Cow position:chr22:19143446-19142763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr22:21589577-21590266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr22:31313592-31314275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr22:31334785-31334107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr22:34168584-34169267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr22:39469270-39468592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr22:42991425-42992104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-774
               
               
               Cow position:chr22:34599659-34600310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:102-773
               
               
               Cow position:chr22:37072824-37072156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:103-273
               
               
               Cow position:chr22:1522266-1522439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:103-773
               
               
               Cow position:chr22:18816131-18815452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:104-774
               
               
               Cow position:chr22:326914-326240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 140

               
               
               Conread position:105-221
               
               
               Cow position:chr22:46853600-46853718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:115-340
               
               
               Cow position:chr22:15851581-15851810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):9, 219

               
               
               Conread position:116-771
               
               
               Cow position:chr22:44369363-44368691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:117-592
               
               
               Cow position:chr22:5308370-5308848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 321

               
               
               Conread position:119-771
               
               
               Cow position:chr22:20240579-20239915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:121-574
               
               
               Cow position:chr22:48004807-48005272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 142

               
               
               Conread position:122-773
               
               
               Cow position:chr22:1520740-1520095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:127-771
               
               
               Cow position:chr22:3278083-3277433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 200

               
               
               Conread position:129-769
               
               
               Cow position:chr22:5233007-5232367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 484

               
               
               Conread position:142-773
               
               
               Cow position:chr22:24536044-24536657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:227-772
               
               
               Cow position:chr22:8135732-8135190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:232-771
               
               
               Cow position:chr22:14629798-14630345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 376

               
               
               Conread position:276-774
               
               
               Cow position:chr22:44457480-44457983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 278

               
               
               Conread position:283-765
               
               
               Cow position:chr22:2395561-2395073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:336-773
               
               
               Cow position:chr22:45930167-45930602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:360-773
               
               
               Cow position:chr22:41239885-41240303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:375-670
               
               
               Cow position:chr22:9287116-9287410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 188

               
               
               Conread position:380-771
               
               
               Cow position:chr22:11804524-11804129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 223

               
               
               Conread position:387-745
               
               
               Cow position:chr22:36129454-36129815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 211

               
               
               Conread position:419-673
               
               
               Cow position:chr22:36276075-36276324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:421-773
               
               
               Cow position:chr22:522819-522466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:425-774
               
               
               Cow position:chr22:6332297-6332639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:427-773
               
               
               Cow position:chr22:3802777-3803117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:432-750
               
               
               Cow position:chr22:6142792-6142477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:490-773
               
               
               Cow position:chr22:44351016-44350734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:496-773
               
               
               Cow position:chr22:37293018-37292737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:510-773
               
               
               Cow position:chr22:28659694-28659432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:527-765
               
               
               Cow position:chr22:19586207-19585971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:528-773
               
               
               Cow position:chr22:17327770-17327526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:562-756
               
               
               Cow position:chr22:37140627-37140811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:618-773
               
               
               Cow position:chr22:1281958-1281802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:43-771
               
               
               Cow position:chr23:16615246-16614510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:49-497
               
               
               Cow position:chr23:7046465-7045990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:93-773
               
               
               Cow position:chr23:20155966-20155290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 5

               
               
               Conread position:96-446
               
               
               Cow position:chr23:4434701-4435057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:98-512
               
               
               Cow position:chr23:16616594-16616171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:98-773
               
               
               Cow position:chr23:36031125-36030449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:99-773
               
               
               Cow position:chr23:2716641-2717319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 317

               
               
               Conread position:99-773
               
               
               Cow position:chr23:4640371-4639696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr23:4888926-4889612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:100-472
               
               
               Cow position:chr23:25683787-25683428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:100-556
               
               
               Cow position:chr23:2781961-2781501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 214

               
               
               Conread position:100-583
               
               
               Cow position:chr23:5874387-5873912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:100-771
               
               
               Cow position:chr23:4510331-4510984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 5

               
               
               Conread position:103-767
               
               
               Cow position:chr23:27399758-27400430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:103-773
               
               
               Cow position:chr23:19489797-19490464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 312

               
               
               Conread position:105-380
               
               
               Cow position:chr23:22146996-22146718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:105-773
               
               
               Cow position:chr23:29452060-29451412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 143

               
               
               Conread position:106-773
               
               
               Cow position:chr23:28913654-28914323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:115-773
               
               
               Cow position:chr23:15177338-15178001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:115-773
               
               
               Cow position:chr23:15219629-15218974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:137-698
               
               
               Cow position:chr23:23830249-23830815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:215-748
               
               
               Cow position:chr23:28108025-28108555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:215-749
               
               
               Cow position:chr23:28025032-28025574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 370

               
               
               Conread position:232-747
               
               
               Cow position:chr23:27970921-27971443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 352

               
               
               Conread position:304-771
               
               
               Cow position:chr23:3880622-3880155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 273

               
               
               Conread position:315-769
               
               
               Cow position:chr23:3706586-3707045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:322-773
               
               
               Cow position:chr23:2026610-2026153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 284

               
               
               Conread position:345-590
               
               
               Cow position:chr23:2575462-2575699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:378-773
               
               
               Cow position:chr23:11077679-11077279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:421-771
               
               
               Cow position:chr23:11779361-11779710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:428-773
               
               
               Cow position:chr23:22146714-22146372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:434-773
               
               
               Cow position:chr23:15526155-15526497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 168

               
               
               Conread position:468-696
               
               
               Cow position:chr23:31594463-31594237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:504-773
               
               
               Cow position:chr23:14778500-14778238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:507-773
               
               
               Cow position:chr23:16498564-16498303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:527-773
               
               
               Cow position:chr23:25683252-25683007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:552-773
               
               
               Cow position:chr23:2781259-2781038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):120, 53

               
               
               Conread position:559-773
               
               
               Cow position:chr23:965780-965567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:599-762
               
               
               Cow position:chr23:15041993-15041828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:614-773
               
               
               Cow position:chr23:5873810-5873650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:617-773
               
               
               Cow position:chr23:2576197-2576353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 110

               
               
               Conread position:657-773
               
               
               Cow position:chr23:8286842-8286959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:25-773
               
               
               Cow position:chr24:12206054-12205293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 8

               
               
               Conread position:35-773
               
               
               Cow position:chr24:36559498-36558758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:49-773
               
               
               Cow position:chr24:38637822-38638553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:93-382
               
               
               Cow position:chr24:12232643-12232364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):74, 178

               
               
               Conread position:99-773
               
               
               Cow position:chr24:148280-147595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr24:12335436-12334744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr24:19833724-19834409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr24:29187622-29188305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-315
               
               
               Cow position:chr24:37217347-37217564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:100-773
               
               
               Cow position:chr24:17696638-17695968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:101-498
               
               
               Cow position:chr24:12130634-12130233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:103-773
               
               
               Cow position:chr24:4415188-4414518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:103-773
               
               
               Cow position:chr24:22971431-22972105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:105-773
               
               
               Cow position:chr24:33933710-33934387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 500

               
               
               Conread position:106-773
               
               
               Cow position:chr24:12086545-12087217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:117-771
               
               
               Cow position:chr24:43814113-43814776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:119-771
               
               
               Cow position:chr24:9188383-9187720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:121-771
               
               
               Cow position:chr24:29305972-29305308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 493

               
               
               Conread position:127-771
               
               
               Cow position:chr24:13188532-13189184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 310

               
               
               Conread position:165-773
               
               
               Cow position:chr24:6660096-6659480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 444

               
               
               Conread position:173-589
               
               
               Cow position:chr24:14754594-14754165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:232-771
               
               
               Cow position:chr24:12110224-12109693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:243-763
               
               
               Cow position:chr24:6059376-6059900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:244-756
               
               
               Cow position:chr24:9544542-9545062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 355

               
               
               Conread position:262-773
               
               
               Cow position:chr24:19702003-19702499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 51

               
               
               Conread position:263-773
               
               
               Cow position:chr24:14301994-14302493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):193, 41

               
               
               Conread position:272-771
               
               
               Cow position:chr24:12700312-12699804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 330

               
               
               Conread position:297-773
               
               
               Cow position:chr24:6065182-6064710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:313-638
               
               
               Cow position:chr24:6145957-6146277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:341-771
               
               
               Cow position:chr24:6435052-6435491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 269

               
               
               Conread position:380-585
               
               
               Cow position:chr24:37064371-37064170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:383-773
               
               
               Cow position:chr24:7090343-7089954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:413-773
               
               
               Cow position:chr24:14383934-14383578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:458-769
               
               
               Cow position:chr24:40655751-40656061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:479-773
               
               
               Cow position:chr24:12129343-12129053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:485-773
               
               
               Cow position:chr24:6406756-6407044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:496-748
               
               
               Cow position:chr24:6337122-6337375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:501-773
               
               
               Cow position:chr24:40193258-40193527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:504-773
               
               
               Cow position:chr24:6332951-6332680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:555-771
               
               
               Cow position:chr24:29182949-29183163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:611-771
               
               
               Cow position:chr24:11866397-11866236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:78-290
               
               
               Cow position:chr25:33665405-33665193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:99-749
               
               
               Cow position:chr25:26279554-26280195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:105-232
               
               
               Cow position:chr25:14016465-14016595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:105-382
               
               
               Cow position:chr25:9544361-9544638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:105-649
               
               
               Cow position:chr25:18303700-18304244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:106-395
               
               
               Cow position:chr25:17560337-17560045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:115-544
               
               
               Cow position:chr25:24659562-24659994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:115-773
               
               
               Cow position:chr25:13781339-13782009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 496

               
               
               Conread position:117-490
               
               
               Cow position:chr25:18274670-18274289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 350

               
               
               Conread position:117-739
               
               
               Cow position:chr25:32580270-32580897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 107

               
               
               Conread position:117-770
               
               
               Cow position:chr25:27022261-27021612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:151-773
               
               
               Cow position:chr25:26879538-26880159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 429

               
               
               Conread position:154-747
               
               
               Cow position:chr25:40918810-40918227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 153

               
               
               Conread position:172-773
               
               
               Cow position:chr25:22147907-22148515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:174-773
               
               
               Cow position:chr25:12758718-12758113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:218-773
               
               
               Cow position:chr25:20630045-20630605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 198

               
               
               Conread position:298-773
               
               
               Cow position:chr25:25507196-25507676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 307

               
               
               Conread position:395-773
               
               
               Cow position:chr25:17559951-17559576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:478-773
               
               
               Cow position:chr25:18274088-18273794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:488-773
               
               
               Cow position:chr25:18889053-18888768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:641-772
               
               
               Cow position:chr25:27525296-27525164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:49-203
               
               
               Cow position:chr26:20255613-20255772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:99-589
               
               
               Cow position:chr26:9563042-9562541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:99-770
               
               
               Cow position:chr26:4604872-4604191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 5

               
               
               Conread position:99-773
               
               
               Cow position:chr26:6849121-6848450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr26:19351198-19350520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr26:17396614-17395919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:105-223
               
               
               Cow position:chr26:12574088-12573967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:115-773
               
               
               Cow position:chr26:30589042-30588377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:117-771
               
               
               Cow position:chr26:2198952-2199617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 486

               
               
               Conread position:119-769
               
               
               Cow position:chr26:8870208-8870864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 134

               
               
               Conread position:127-771
               
               
               Cow position:chr26:8919186-8919822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 165

               
               
               Conread position:127-771
               
               
               Cow position:chr26:12588229-12587575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 454

               
               
               Conread position:127-771
               
               
               Cow position:chr26:15144424-15143770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 433

               
               
               Conread position:137-771
               
               
               Cow position:chr26:18852565-18853211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:153-771
               
               
               Cow position:chr26:9844524-9843912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:180-773
               
               
               Cow position:chr26:21826288-21825692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 145

               
               
               Conread position:414-773
               
               
               Cow position:chr26:14894575-14894935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 186

               
               
               Conread position:473-771
               
               
               Cow position:chr26:1087755-1087461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:533-730
               
               
               Cow position:chr26:33523999-33524192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:32-773
               
               
               Cow position:chr27:26555483-26554743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:99-768
               
               
               Cow position:chr27:9992950-9992276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr27:14460203-14459522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:105-234
               
               
               Cow position:chr27:25002277-25002143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:105-454
               
               
               Cow position:chr27:15277815-15277455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 208

               
               
               Conread position:105-773
               
               
               Cow position:chr27:28078705-28079364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:105-774
               
               
               Cow position:chr27:5911121-5911799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:107-773
               
               
               Cow position:chr27:1209613-1210285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:116-773
               
               
               Cow position:chr27:25804635-25803969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:121-773
               
               
               Cow position:chr27:9329999-9330662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:127-771
               
               
               Cow position:chr27:15541602-15542257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 440

               
               
               Conread position:169-589
               
               
               Cow position:chr27:15046493-15046920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 58

               
               
               Conread position:169-773
               
               
               Cow position:chr27:15037268-15036661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 239

               
               
               Conread position:181-773
               
               
               Cow position:chr27:26325402-26326003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 425

               
               
               Conread position:243-765
               
               
               Cow position:chr27:27196210-27195699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:245-729
               
               
               Cow position:chr27:27414265-27414753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 120

               
               
               Conread position:291-773
               
               
               Cow position:chr27:3235097-3234611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 307

               
               
               Conread position:375-759
               
               
               Cow position:chr27:22672869-22673258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:380-763
               
               
               Cow position:chr27:21287333-21286945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 66

               
               
               Conread position:380-771
               
               
               Cow position:chr27:11095341-11095732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 202

               
               
               Conread position:387-755
               
               
               Cow position:chr27:27663509-27663879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 206

               
               
               Conread position:528-777
               
               
               Cow position:chr27:15636661-15636412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:619-773
               
               
               Cow position:chr27:13898102-13898251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:8-594
               
               
               Cow position:chr28:10497820-10497237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:26-661
               
               
               Cow position:chr28:2989023-2988374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:32-696
               
               
               Cow position:chr28:10872437-10873077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:427
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):139, 6

               
               
               Conread position:35-516
               
               
               Cow position:chr28:5797987-5798463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:48-772
               
               
               Cow position:chr28:7789711-7788976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:49-186
               
               
               Cow position:chr28:14946876-14947021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:49-427
               
               
               Cow position:chr28:3020501-3020123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 46

               
               
               Conread position:49-769
               
               
               Cow position:chr28:10647141-10646432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:55-771
               
               
               Cow position:chr28:10071531-10072248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:99-589
               
               
               Cow position:chr28:7740778-7741265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:1814570-1813888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:5566442-5567130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:5937773-5938460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:99-773
               
               
               Cow position:chr28:12150601-12151280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr28:12409928-12409258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:99-773
               
               
               Cow position:chr28:13460267-13460949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:17388779-17389457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:99-773
               
               
               Cow position:chr28:17667000-17666331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:22260853-22260176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:99-773
               
               
               Cow position:chr28:26425954-26425280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:32792083-32791400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr28:33252609-33253279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-774
               
               
               Cow position:chr28:5751408-5750731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-407
               
               
               Cow position:chr28:10581686-10581372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:100-771
               
               
               Cow position:chr28:7002288-7002969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:106-767
               
               
               Cow position:chr28:1167576-1166907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:117-773
               
               
               Cow position:chr28:22233092-22232446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:127-771
               
               
               Cow position:chr28:14750864-14751517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:146-759
               
               
               Cow position:chr28:18100875-18100245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:154-762
               
               
               Cow position:chr28:3191895-3191291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:163-773
               
               
               Cow position:chr28:18520084-18519474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:174-659
               
               
               Cow position:chr28:14195320-14194830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:281-591
               
               
               Cow position:chr28:32627247-32626952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 29

               
               
               Conread position:298-773
               
               
               Cow position:chr28:14704892-14704412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:312-721
               
               
               Cow position:chr28:18147240-18146833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:373-773
               
               
               Cow position:chr28:29820579-29820971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:397-773
               
               
               Cow position:chr28:3020116-3019742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:399-773
               
               
               Cow position:chr28:8720348-8719971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 64

               
               
               Conread position:415-767
               
               
               Cow position:chr28:24668238-24668581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:441-777
               
               
               Cow position:chr28:5802674-5803017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:488-774
               
               
               Cow position:chr28:783367-783649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:511-771
               
               
               Cow position:chr28:7823257-7823514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:526-773
               
               
               Cow position:chr28:8379786-8380031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:549-771
               
               
               Cow position:chr28:24884224-24884002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:617-771
               
               
               Cow position:chr28:2085321-2085473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:628-773
               
               
               Cow position:chr28:15684066-15684214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:44-771
               
               
               Cow position:chr29:5982502-5981776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:45-773
               
               
               Cow position:chr29:31024568-31023848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:468
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:49-671
               
               
               Cow position:chr29:3177372-3176762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:392
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:49-773
               
               
               Cow position:chr29:14085920-14085188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:93-482
               
               
               Cow position:chr29:802670-802281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:99-742
               
               
               Cow position:chr29:16022793-16023448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-749
               
               
               Cow position:chr29:10823706-10823057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-768
               
               
               Cow position:chr29:20251422-20252100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr29:2100108-2100788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr29:2690163-2690852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr29:7430956-7430278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr29:26164559-26163889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr29:38227243-38227918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:99-773
               
               
               Cow position:chr29:40502719-40502040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:101-773
               
               
               Cow position:chr29:39079447-39078765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:103-761
               
               
               Cow position:chr29:45459981-45460652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 507

               
               
               Conread position:103-773
               
               
               Cow position:chr29:25932279-25931600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 237

               
               
               Conread position:104-223
               
               
               Cow position:chr29:16770389-16770509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:105-359
               
               
               Cow position:chr29:42650533-42650791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:105-465
               
               
               Cow position:chr29:42802393-42802761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 320

               
               
               Conread position:105-774
               
               
               Cow position:chr29:21426762-21426086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 436

               
               
               Conread position:106-382
               
               
               Cow position:chr29:6266230-6265952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:106-768
               
               
               Cow position:chr29:43322825-43323493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:106-773
               
               
               Cow position:chr29:10647980-10647309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:115-773
               
               
               Cow position:chr29:2841096-2840437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:117-771
               
               
               Cow position:chr29:669784-669120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 211

               
               
               Conread position:117-773
               
               
               Cow position:chr29:4634119-4633462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:127-771
               
               
               Cow position:chr29:31181698-31182342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:137-771
               
               
               Cow position:chr29:27250049-27249405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:137-771
               
               
               Cow position:chr29:34925772-34926416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 177

               
               
               Conread position:272-771
               
               
               Cow position:chr29:32559324-32558815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 338

               
               
               Conread position:396-771
               
               
               Cow position:chr29:6265714-6265336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 204

               
               
               Conread position:415-773
               
               
               Cow position:chr29:8664104-8664451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 147

               
               
               Conread position:454-648
               
               
               Cow position:chr29:16344861-16345054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:461-773
               
               
               Cow position:chr29:14216598-14216906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:462-773
               
               
               Cow position:chr29:14210938-14210628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:484-771
               
               
               Cow position:chr29:7845033-7845320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:496-773
               
               
               Cow position:chr29:23976786-23977061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:497-697
               
               
               Cow position:chr29:2748587-2748388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:504-773
               
               
               Cow position:chr29:32286873-32287136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:511-773
               
               
               Cow position:chr29:15948846-15948583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:517-773
               
               
               Cow position:chr29:32540780-32541034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:551-773
               
               
               Cow position:chr29:646520-646736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:559-772
               
               
               Cow position:chr29:21264673-21264880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:565-773
               
               
               Cow position:chr29:19622547-19622343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:607-773
               
               
               Cow position:chr29:45205274-45205443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-382
               
               
               Cow position:chr3:77423888-77424271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 52

               
               
               Conread position:1-490
               
               
               Cow position:chr3:6878967-6878496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 24

               
               
               Conread position:6-399
               
               
               Cow position:chr3:4027828-4028224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 165

               
               
               Conread position:25-773
               
               
               Cow position:chr3:58947729-58948471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:40-772
               
               
               Cow position:chr3:42053043-42052303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:43-773
               
               
               Cow position:chr3:6685919-6686663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:44-265
               
               
               Cow position:chr3:19944166-19944392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:48-497
               
               
               Cow position:chr3:15178830-15179281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:49-468
               
               
               Cow position:chr3:26836635-26836258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:49-574
               
               
               Cow position:chr3:52864014-52863471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:49-755
               
               
               Cow position:chr3:48230333-48229641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:79-309
               
               
               Cow position:chr3:18728612-18728389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):150, 37

               
               
               Conread position:93-756
               
               
               Cow position:chr3:18463392-18462731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:96-773
               
               
               Cow position:chr3:50915501-50916193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 220

               
               
               Conread position:97-773
               
               
               Cow position:chr3:49677974-49678657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:99-247
               
               
               Cow position:chr3:26822328-26822178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 6

               
               
               Conread position:99-463
               
               
               Cow position:chr3:36881741-36881367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:99-568
               
               
               Cow position:chr3:49333965-49334438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:99-748
               
               
               Cow position:chr3:64017184-64016533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 6

               
               
               Conread position:99-772
               
               
               Cow position:chr3:18811681-18812360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr3:5954005-5953326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr3:10239834-10240512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr3:19756778-19756093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:99-773
               
               
               Cow position:chr3:21182506-21181845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:23290161-23289479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:99-773
               
               
               Cow position:chr3:34030718-34030049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:40823568-40824244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:45774232-45773550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:99-773
               
               
               Cow position:chr3:49545026-49544354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:53515794-53516468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:57484549-57483874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr3:59861547-59862228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:75040989-75040305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr3:78027229-78026564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr3:63003367-63002688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:103-223
               
               
               Cow position:chr3:40157327-40157204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:103-773
               
               
               Cow position:chr3:66620355-66621038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:105-222
               
               
               Cow position:chr3:41000295-41000414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:105-263
               
               
               Cow position:chr3:55229515-55229355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:105-771
               
               
               Cow position:chr3:7481046-7480375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:105-773
               
               
               Cow position:chr3:42432417-42433074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:105-773
               
               
               Cow position:chr3:45895372-45894696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 119

               
               
               Conread position:105-773
               
               
               Cow position:chr3:45974683-45975358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 119

               
               
               Conread position:105-773
               
               
               Cow position:chr3:46502719-46503402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 316

               
               
               Conread position:106-772
               
               
               Cow position:chr3:30314756-30315415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:115-773
               
               
               Cow position:chr3:72630265-72630929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:116-515
               
               
               Cow position:chr3:50011867-50012269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 290

               
               
               Conread position:116-773
               
               
               Cow position:chr3:23213876-23213221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:116-773
               
               
               Cow position:chr3:56340230-56339563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 288

               
               
               Conread position:117-672
               
               
               Cow position:chr3:14439570-14439011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 322

               
               
               Conread position:117-771
               
               
               Cow position:chr3:6782575-6783219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 219

               
               
               Conread position:117-771
               
               
               Cow position:chr3:45032932-45033601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 498

               
               
               Conread position:117-771
               
               
               Cow position:chr3:64650817-64651482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 487

               
               
               Conread position:119-771
               
               
               Cow position:chr3:2917652-2918316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:127-771
               
               
               Cow position:chr3:68873554-68872902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 297

               
               
               Conread position:130-771
               
               
               Cow position:chr3:20380747-20381396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 307

               
               
               Conread position:137-771
               
               
               Cow position:chr3:24314678-24315323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 217

               
               
               Conread position:151-773
               
               
               Cow position:chr3:19939104-19939748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 187

               
               
               Conread position:167-773
               
               
               Cow position:chr3:29578876-29579480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 261

               
               
               Conread position:174-594
               
               
               Cow position:chr3:52654613-52654200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:257-773
               
               
               Cow position:chr3:2710531-2710013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 235

               
               
               Conread position:258-773
               
               
               Cow position:chr3:50127316-50126771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 190

               
               
               Conread position:261-762
               
               
               Cow position:chr3:6661142-6661641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:273-773
               
               
               Cow position:chr3:19944607-19945085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 204

               
               
               Conread position:301-771
               
               
               Cow position:chr3:64357409-64356941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:307-765
               
               
               Cow position:chr3:38493638-38494083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 167

               
               
               Conread position:314-774
               
               
               Cow position:chr3:56397593-56398045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:341-673
               
               
               Cow position:chr3:24589584-24589253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:367-771
               
               
               Cow position:chr3:7169656-7170053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:384-773
               
               
               Cow position:chr3:42447570-42447963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 217

               
               
               Conread position:396-695
               
               
               Cow position:chr3:4028365-4028673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:431-731
               
               
               Cow position:chr3:56145797-56146100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:450-773
               
               
               Cow position:chr3:3841273-3840954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 147

               
               
               Conread position:458-761
               
               
               Cow position:chr3:53411725-53412011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 126

               
               
               Conread position:488-771
               
               
               Cow position:chr3:56098788-56099073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:490-774
               
               
               Cow position:chr3:34845712-34846002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:496-766
               
               
               Cow position:chr3:46016344-46016608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:511-771
               
               
               Cow position:chr3:2869375-2869633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:511-771
               
               
               Cow position:chr3:18355673-18355418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:517-773
               
               
               Cow position:chr3:3057444-3057687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:529-773
               
               
               Cow position:chr3:48058742-48058499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:536-771
               
               
               Cow position:chr3:4286705-4286938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 63

               
               
               Conread position:537-771
               
               
               Cow position:chr3:63915494-63915262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):135, 61

               
               
               Conread position:537-773
               
               
               Cow position:chr3:6877545-6877318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):138, 25

               
               
               Conread position:555-773
               
               
               Cow position:chr3:5994449-5994233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:611-773
               
               
               Cow position:chr3:83294218-83294056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:617-773
               
               
               Cow position:chr3:24445380-24445226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:627-773
               
               
               Cow position:chr3:77424343-77424490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):53, 139

               
               
               Conread position:663-771
               
               
               Cow position:chr3:24589022-24588913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-532
               
               
               Cow position:chr4:22472417-22472946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:25-771
               
               
               Cow position:chr4:46664415-46665176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:48-750
               
               
               Cow position:chr4:13869950-13870652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:55-773
               
               
               Cow position:chr4:60264229-60263503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:56-768
               
               
               Cow position:chr4:34184586-34183884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:69-773
               
               
               Cow position:chr4:61694544-61693877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 24

               
               
               Conread position:91-378
               
               
               Cow position:chr4:12607686-12607406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:99-486
               
               
               Cow position:chr4:14821562-14821177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:99-747
               
               
               Cow position:chr4:12241232-12240577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:99-771
               
               
               Cow position:chr4:36896353-36897033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr4:6490379-6489701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr4:25599516-25598834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr4:43319661-43318980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr4:43881094-43881768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr4:48026382-48027062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:103-245
               
               
               Cow position:chr4:66925984-66926130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:103-773
               
               
               Cow position:chr4:31565316-31564646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:103-773
               
               
               Cow position:chr4:31669259-31669935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:105-589
               
               
               Cow position:chr4:26886870-26886374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:106-359
               
               
               Cow position:chr4:33493818-33494072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:108-749
               
               
               Cow position:chr4:39271398-39270764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:115-773
               
               
               Cow position:chr4:18516896-18517561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:117-777
               
               
               Cow position:chr4:1930628-1929965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 414

               
               
               Conread position:118-588
               
               
               Cow position:chr4:16056598-16057079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:119-771
               
               
               Cow position:chr4:32212163-32212830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 495

               
               
               Conread position:130-706
               
               
               Cow position:chr4:16326766-16326179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 482

               
               
               Conread position:166-773
               
               
               Cow position:chr4:33072774-33072158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 440

               
               
               Conread position:169-773
               
               
               Cow position:chr4:13493365-13493981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:174-773
               
               
               Cow position:chr4:33595623-33596199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:373
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:239-773
               
               
               Cow position:chr4:29531753-29531222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 116

               
               
               Conread position:245-773
               
               
               Cow position:chr4:62568560-62569095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 254

               
               
               Conread position:295-770
               
               
               Cow position:chr4:27301274-27300820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 62

               
               
               Conread position:335-762
               
               
               Cow position:chr4:41332930-41333354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 269

               
               
               Conread position:357-771
               
               
               Cow position:chr4:603258-603675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 237

               
               
               Conread position:358-771
               
               
               Cow position:chr4:58689847-58689431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:361-749
               
               
               Cow position:chr4:64854018-64853614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 248

               
               
               Conread position:411-773
               
               
               Cow position:chr4:10881847-10882209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 189

               
               
               Conread position:429-660
               
               
               Cow position:chr4:17365615-17365382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:434-771
               
               
               Cow position:chr4:18337184-18337523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 165

               
               
               Conread position:459-750
               
               
               Cow position:chr4:28831909-28832199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 58

               
               
               Conread position:459-773
               
               
               Cow position:chr4:20604079-20604386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:483-740
               
               
               Cow position:chr4:494208-493953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 115

               
               
               Conread position:488-773
               
               
               Cow position:chr4:11110895-11110602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:488-773
               
               
               Cow position:chr4:17925581-17925302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:504-773
               
               
               Cow position:chr4:47254533-47254270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:506-773
               
               
               Cow position:chr4:1049863-1049602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:520-773
               
               
               Cow position:chr4:6206007-6206256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:520-773
               
               
               Cow position:chr4:16360321-16360574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:526-771
               
               
               Cow position:chr4:44726013-44726254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:527-773
               
               
               Cow position:chr4:67681609-67681854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:528-773
               
               
               Cow position:chr4:22473774-22474011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):147, 9

               
               
               Conread position:551-773
               
               
               Cow position:chr4:16639053-16639273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:616-773
               
               
               Cow position:chr4:19006052-19005894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:617-771
               
               
               Cow position:chr4:44780720-44780565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:618-773
               
               
               Cow position:chr4:45298579-45298423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:652-773
               
               
               Cow position:chr4:49716216-49716338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:25-277
               
               
               Cow position:chr5:41961936-41961684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:25-771
               
               
               Cow position:chr5:41528759-41528018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 308

               
               
               Conread position:44-774
               
               
               Cow position:chr5:35525827-35526555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 265

               
               
               Conread position:46-497
               
               
               Cow position:chr5:39246985-39246525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 45

               
               
               Conread position:48-774
               
               
               Cow position:chr5:14785357-14784609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:53-473
               
               
               Cow position:chr5:46660069-46660489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:98-773
               
               
               Cow position:chr5:46738497-46737816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:99-698
               
               
               Cow position:chr5:415642-415035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-771
               
               
               Cow position:chr5:7273908-7274584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 23

               
               
               Conread position:99-771
               
               
               Cow position:chr5:30579402-30580085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-771
               
               
               Cow position:chr5:73489481-73488801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:99-773
               
               
               Cow position:chr5:2914528-2915204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr5:3504024-3503363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr5:37732426-37733105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr5:54792555-54791877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr5:55628066-55628749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr5:57482466-57481781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr5:10918902-10919584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:103-773
               
               
               Cow position:chr5:32947147-32947817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):569, 448

               
               
               Conread position:103-773
               
               
               Cow position:chr5:64781936-64781258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:105-223
               
               
               Cow position:chr5:9686342-9686221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:105-247
               
               
               Cow position:chr5:20971961-20971817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:105-247
               
               
               Cow position:chr5:38842104-38842249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:105-247
               
               
               Cow position:chr5:52805523-52805669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:105-290
               
               
               Cow position:chr5:32945961-32946147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:105-693
               
               
               Cow position:chr5:31101540-31100950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:105-773
               
               
               Cow position:chr5:4385331-4386001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 46

               
               
               Conread position:105-773
               
               
               Cow position:chr5:34696688-34697361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:117-491
               
               
               Cow position:chr5:46644775-46645153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 317

               
               
               Conread position:117-770
               
               
               Cow position:chr5:4019108-4018446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:117-771
               
               
               Cow position:chr5:10776174-10775515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 444

               
               
               Conread position:127-771
               
               
               Cow position:chr5:48468179-48467525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 279

               
               
               Conread position:137-706
               
               
               Cow position:chr5:4089181-4089758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:143-773
               
               
               Cow position:chr5:12643597-12642968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:166-773
               
               
               Cow position:chr5:4069362-4069971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 440

               
               
               Conread position:168-771
               
               
               Cow position:chr5:35300242-35300853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 442

               
               
               Conread position:169-773
               
               
               Cow position:chr5:53625744-53625155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:175-761
               
               
               Cow position:chr5:59282478-59283065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):497, 0

               
               
               Conread position:202-759
               
               
               Cow position:chr5:47894355-47893795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:207-771
               
               
               Cow position:chr5:241385-241950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:258-667
               
               
               Cow position:chr5:41465273-41465678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):128, 196

               
               
               Conread position:258-773
               
               
               Cow position:chr5:28011889-28012412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 304

               
               
               Conread position:258-773
               
               
               Cow position:chr5:45700554-45701070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 344

               
               
               Conread position:262-773
               
               
               Cow position:chr5:49591853-49591342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:279-773
               
               
               Cow position:chr5:41961464-41960971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 324

               
               
               Conread position:295-771
               
               
               Cow position:chr5:4757893-4757408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 315

               
               
               Conread position:299-773
               
               
               Cow position:chr5:1341756-1341274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 307

               
               
               Conread position:344-771
               
               
               Cow position:chr5:42505324-42505759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 265

               
               
               Conread position:357-771
               
               
               Cow position:chr5:38073365-38073787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 251

               
               
               Conread position:359-664
               
               
               Cow position:chr5:29457080-29457367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:398-773
               
               
               Cow position:chr5:29766269-29766642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:415-762
               
               
               Cow position:chr5:26078800-26078452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 177

               
               
               Conread position:437-762
               
               
               Cow position:chr5:52613527-52613200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:439-773
               
               
               Cow position:chr5:28241475-28241810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:442-773
               
               
               Cow position:chr5:49518987-49519318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:457-773
               
               
               Cow position:chr5:54861606-54861304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:459-774
               
               
               Cow position:chr5:46005409-46005098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):61, 140

               
               
               Conread position:496-741
               
               
               Cow position:chr5:59144722-59144967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:496-773
               
               
               Cow position:chr5:32308911-32308636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:497-767
               
               
               Cow position:chr5:59639267-59639529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:509-765
               
               
               Cow position:chr5:36444183-36443929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:510-773
               
               
               Cow position:chr5:28950371-28950105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:526-773
               
               
               Cow position:chr5:6154388-6154143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:537-773
               
               
               Cow position:chr5:39246288-39246054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:598-773
               
               
               Cow position:chr5:41554751-41554576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:3-425
               
               
               Cow position:chr6:35419730-35419294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:50-272
               
               
               Cow position:chr6:6475995-6475762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:52-774
               
               
               Cow position:chr6:14762674-14761991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:446
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:55-773
               
               
               Cow position:chr6:7179103-7178397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:66-591
               
               
               Cow position:chr6:44550918-44550375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:96-771
               
               
               Cow position:chr6:331255-330570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 515

               
               
               Conread position:98-773
               
               
               Cow position:chr6:52693244-52693914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:99-432
               
               
               Cow position:chr6:55544105-55543764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-756
               
               
               Cow position:chr6:3889256-3888614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:99-762
               
               
               Cow position:chr6:15140958-15140294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr6:8761083-8760392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr6:27529785-27529103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr6:35876496-35875818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 6

               
               
               Conread position:101-751
               
               
               Cow position:chr6:65928187-65928839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:103-773
               
               
               Cow position:chr6:17046279-17046950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:105-223
               
               
               Cow position:chr6:59919058-59918938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:105-253
               
               
               Cow position:chr6:19454142-19454292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:105-773
               
               
               Cow position:chr6:6566832-6567488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 184

               
               
               Conread position:105-773
               
               
               Cow position:chr6:30479326-30479999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 434

               
               
               Conread position:106-773
               
               
               Cow position:chr6:5949549-5948879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:106-773
               
               
               Cow position:chr6:24239295-24239956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:109-756
               
               
               Cow position:chr6:38900940-38900292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:115-762
               
               
               Cow position:chr6:20560876-20560219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:116-750
               
               
               Cow position:chr6:28275214-28275854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:121-664
               
               
               Cow position:chr6:15477146-15477705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:127-771
               
               
               Cow position:chr6:27169823-27170471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 203

               
               
               Conread position:127-771
               
               
               Cow position:chr6:40251905-40252557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:127-773
               
               
               Cow position:chr6:40275330-40275986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:127-773
               
               
               Cow position:chr6:51086188-51086841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 204

               
               
               Conread position:132-593
               
               
               Cow position:chr6:65914449-65914919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:137-767
               
               
               Cow position:chr6:13847277-13847919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 272

               
               
               Conread position:140-767
               
               
               Cow position:chr6:66232075-66232707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 168

               
               
               Conread position:163-752
               
               
               Cow position:chr6:11724824-11724232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 202

               
               
               Conread position:166-773
               
               
               Cow position:chr6:27470887-27471497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 250

               
               
               Conread position:168-771
               
               
               Cow position:chr6:12666028-12665423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:168-773
               
               
               Cow position:chr6:40315675-40316282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:170-773
               
               
               Cow position:chr6:185497-184885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:175-770
               
               
               Cow position:chr6:7141178-7140567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 443

               
               
               Conread position:232-773
               
               
               Cow position:chr6:58600837-58601378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 72

               
               
               Conread position:236-773
               
               
               Cow position:chr6:3488063-3487525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 32

               
               
               Conread position:262-767
               
               
               Cow position:chr6:6475486-6474975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 37

               
               
               Conread position:273-585
               
               
               Cow position:chr6:40973674-40973991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:273-773
               
               
               Cow position:chr6:914027-914529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:282-696
               
               
               Cow position:chr6:40326281-40325861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 59

               
               
               Conread position:298-773
               
               
               Cow position:chr6:28133354-28133828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 138

               
               
               Conread position:321-590
               
               
               Cow position:chr6:41804297-41804586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:344-771
               
               
               Cow position:chr6:28491103-28490672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 237

               
               
               Conread position:381-773
               
               
               Cow position:chr6:16634749-16635151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 118

               
               
               Conread position:396-773
               
               
               Cow position:chr6:65881731-65882109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 205

               
               
               Conread position:422-773
               
               
               Cow position:chr6:8202727-8203081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:431-717
               
               
               Cow position:chr6:55542699-55542406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:432-773
               
               
               Cow position:chr6:25214779-25215117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:440-588
               
               
               Cow position:chr6:58064805-58064953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:474-703
               
               
               Cow position:chr6:11274296-11274068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:474-772
               
               
               Cow position:chr6:38271501-38271786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:486-773
               
               
               Cow position:chr6:51730708-51730995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):6, 112

               
               
               Conread position:488-773
               
               
               Cow position:chr6:3276761-3276476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:488-773
               
               
               Cow position:chr6:39438380-39438663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:488-773
               
               
               Cow position:chr6:40866704-40866419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:496-773
               
               
               Cow position:chr6:30274270-30273995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:509-773
               
               
               Cow position:chr6:28169538-28169802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:510-771
               
               
               Cow position:chr6:56043083-56042823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:511-771
               
               
               Cow position:chr6:1411019-1410762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:517-728
               
               
               Cow position:chr6:36526905-36527119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:517-771
               
               
               Cow position:chr6:13316828-13316577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:517-773
               
               
               Cow position:chr6:39334226-39333971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:524-773
               
               
               Cow position:chr6:10609556-10609805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:537-762
               
               
               Cow position:chr6:14389242-14389465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 62

               
               
               Conread position:548-773
               
               
               Cow position:chr6:58027350-58027571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:556-758
               
               
               Cow position:chr6:29312209-29312409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):116, 40

               
               
               Conread position:559-773
               
               
               Cow position:chr6:34891438-34891226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 38

               
               
               Conread position:596-777
               
               
               Cow position:chr6:10644463-10644644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:611-765
               
               
               Cow position:chr6:58065469-58065621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:619-773
               
               
               Cow position:chr6:65842368-65842523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:7-499
               
               
               Cow position:chr7:29370082-29369577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 58

               
               
               Conread position:24-464
               
               
               Cow position:chr7:21310731-21311160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:25-408
               
               
               Cow position:chr7:20820948-20821332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:35-412
               
               
               Cow position:chr7:4415612-4416004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:37-273
               
               
               Cow position:chr7:55280092-55279857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:48-266
               
               
               Cow position:chr7:54644261-54644035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:49-771
               
               
               Cow position:chr7:48634685-48635412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:49-771
               
               
               Cow position:chr7:51014518-51015252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 147

               
               
               Conread position:55-176
               
               
               Cow position:chr7:6488204-6488079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:55-326
               
               
               Cow position:chr7:59683540-59683811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:56-773
               
               
               Cow position:chr7:29470728-29471449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:97-773
               
               
               Cow position:chr7:24057746-24058430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:98-773
               
               
               Cow position:chr7:8144933-8144244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:98-773
               
               
               Cow position:chr7:21127352-21126673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:99-512
               
               
               Cow position:chr7:68232252-68232658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:99-772
               
               
               Cow position:chr7:14139289-14138608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr7:21234700-21234021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr7:24808153-24807468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr7:33405930-33405254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:99-773
               
               
               Cow position:chr7:34486226-34486905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr7:45948840-45948155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr7:46901769-46901091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 6

               
               
               Conread position:100-773
               
               
               Cow position:chr7:10431105-10430434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:105-242
               
               
               Cow position:chr7:1610894-1610754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:105-499
               
               
               Cow position:chr7:5662690-5663080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:105-750
               
               
               Cow position:chr7:21929459-21930115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:105-773
               
               
               Cow position:chr7:27786937-27787620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 242

               
               
               Conread position:105-773
               
               
               Cow position:chr7:67799168-67799814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:115-672
               
               
               Cow position:chr7:25250424-25250993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:115-773
               
               
               Cow position:chr7:55537592-55536935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:119-771
               
               
               Cow position:chr7:3300834-3300169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:139-773
               
               
               Cow position:chr7:59679200-59679836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:143-773
               
               
               Cow position:chr7:38397167-38397804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 221

               
               
               Conread position:151-773
               
               
               Cow position:chr7:994879-995505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 309

               
               
               Conread position:154-774
               
               
               Cow position:chr7:21853460-21852844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:157-593
               
               
               Cow position:chr7:27127706-27128142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:169-773
               
               
               Cow position:chr7:525353-525965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 262

               
               
               Conread position:171-771
               
               
               Cow position:chr7:68480938-68481532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:174-594
               
               
               Cow position:chr7:68333370-68333795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:174-773
               
               
               Cow position:chr7:7211601-7211007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:176-768
               
               
               Cow position:chr7:65458784-65458204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:387
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:177-773
               
               
               Cow position:chr7:63386124-63386717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:227-774
               
               
               Cow position:chr7:39555021-39554486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:245-769
               
               
               Cow position:chr7:40269491-40269009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:339
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):275, 54

               
               
               Conread position:319-773
               
               
               Cow position:chr7:15810949-15810469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:326-771
               
               
               Cow position:chr7:545380-545830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:380-744
               
               
               Cow position:chr7:53407223-53407576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:380-749
               
               
               Cow position:chr7:63555555-63555922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:380-773
               
               
               Cow position:chr7:61578048-61578444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 222

               
               
               Conread position:396-773
               
               
               Cow position:chr7:67489315-67489697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 151

               
               
               Conread position:408-645
               
               
               Cow position:chr7:1610095-1609852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):59, 190

               
               
               Conread position:417-773
               
               
               Cow position:chr7:59683819-59684170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 126

               
               
               Conread position:419-761
               
               
               Cow position:chr7:59138291-59138634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:461-773
               
               
               Cow position:chr7:13533233-13532914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):60, 268

               
               
               Conread position:470-720
               
               
               Cow position:chr7:21311127-21311374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:488-773
               
               
               Cow position:chr7:64240305-64240014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:488-773
               
               
               Cow position:chr7:67429279-67429560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:490-773
               
               
               Cow position:chr7:29369317-29369036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:496-773
               
               
               Cow position:chr7:5309395-5309124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:502-771
               
               
               Cow position:chr7:44910759-44910495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:515-773
               
               
               Cow position:chr7:21986159-21986415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:517-771
               
               
               Cow position:chr7:11463312-11463059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:517-773
               
               
               Cow position:chr7:445606-445359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 30

               
               
               Conread position:528-773
               
               
               Cow position:chr7:1452388-1452631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:528-773
               
               
               Cow position:chr7:19269683-19269443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:530-772
               
               
               Cow position:chr7:67494857-67495089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:543-773
               
               
               Cow position:chr7:42870905-42871130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:563-773
               
               
               Cow position:chr7:52803879-52803675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:564-750
               
               
               Cow position:chr7:54671300-54671115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:593-773
               
               
               Cow position:chr7:3156269-3156457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:598-774
               
               
               Cow position:chr7:67675910-67676086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:611-773
               
               
               Cow position:chr7:33332392-33332549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:634-770
               
               
               Cow position:chr7:19989877-19990014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:4-525
               
               
               Cow position:chr8:45160669-45160131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:14-360
               
               
               Cow position:chr8:61034614-61034257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:24-549
               
               
               Cow position:chr8:42468157-42468677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 9

               
               
               Conread position:25-580
               
               
               Cow position:chr8:42160996-42160440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:49-498
               
               
               Cow position:chr8:58186758-58186310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 42

               
               
               Conread position:49-547
               
               
               Cow position:chr8:24419757-24419268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:49-773
               
               
               Cow position:chr8:11969830-11969106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:50-773
               
               
               Cow position:chr8:38606756-38606026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:96-771
               
               
               Cow position:chr8:4686891-4687577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:99-223
               
               
               Cow position:chr8:27925814-27925941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:99-454
               
               
               Cow position:chr8:42658357-42657997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:99-589
               
               
               Cow position:chr8:36636045-36635547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-658
               
               
               Cow position:chr8:12449447-12450014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:99-767
               
               
               Cow position:chr8:23771134-23771807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-771
               
               
               Cow position:chr8:49214926-49215616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr8:3856517-3855848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:99-773
               
               
               Cow position:chr8:5016680-5017356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr8:11832199-11832886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr8:17311517-17312200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:99-773
               
               
               Cow position:chr8:32319050-32318375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr8:39195718-39195038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr8:42484411-42485093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr8:47661826-47661143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:99-773
               
               
               Cow position:chr8:60060879-60061560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-773
               
               
               Cow position:chr8:7161392-7162074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:100-773
               
               
               Cow position:chr8:19050976-19051653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:103-320
               
               
               Cow position:chr8:12717467-12717682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):14, 151

               
               
               Conread position:103-773
               
               
               Cow position:chr8:14591401-14590725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:103-773
               
               
               Cow position:chr8:42419934-42419262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 72

               
               
               Conread position:105-368
               
               
               Cow position:chr8:8229277-8229012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 219

               
               
               Conread position:105-673
               
               
               Cow position:chr8:46944415-46943832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 490

               
               
               Conread position:105-773
               
               
               Cow position:chr8:2170875-2170197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 336

               
               
               Conread position:105-773
               
               
               Cow position:chr8:11802324-11802999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 149

               
               
               Conread position:106-773
               
               
               Cow position:chr8:25776166-25775499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:108-773
               
               
               Cow position:chr8:8911014-8911678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:115-773
               
               
               Cow position:chr8:24915824-24915159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:115-773
               
               
               Cow position:chr8:33588887-33589552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 490

               
               
               Conread position:115-773
               
               
               Cow position:chr8:50994299-50994947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:116-281
               
               
               Cow position:chr8:33430915-33431083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:116-589
               
               
               Cow position:chr8:47074778-47075262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:117-771
               
               
               Cow position:chr8:1319554-1320216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:117-771
               
               
               Cow position:chr8:2886260-2886922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:119-771
               
               
               Cow position:chr8:30891806-30891141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:119-771
               
               
               Cow position:chr8:47069296-47068638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 499

               
               
               Conread position:121-771
               
               
               Cow position:chr8:25408245-25408902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:127-771
               
               
               Cow position:chr8:34348197-34348848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 309

               
               
               Conread position:132-773
               
               
               Cow position:chr8:50930600-50929953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 284

               
               
               Conread position:142-771
               
               
               Cow position:chr8:8315913-8315286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 314

               
               
               Conread position:142-774
               
               
               Cow position:chr8:30487849-30487206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 395

               
               
               Conread position:163-773
               
               
               Cow position:chr8:14928321-14927702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 445

               
               
               Conread position:167-674
               
               
               Cow position:chr8:25436851-25437343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:169-773
               
               
               Cow position:chr8:50288357-50287748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:170-771
               
               
               Cow position:chr8:8401545-8400941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 243

               
               
               Conread position:187-773
               
               
               Cow position:chr8:11762526-11763117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:236-773
               
               
               Cow position:chr8:46050820-46051364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 99

               
               
               Conread position:259-671
               
               
               Cow position:chr8:25376416-25376834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 6

               
               
               Conread position:261-770
               
               
               Cow position:chr8:9964798-9964296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:343
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:264-754
               
               
               Cow position:chr8:8308256-8308752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 287

               
               
               Conread position:271-773
               
               
               Cow position:chr8:59262252-59261742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 335

               
               
               Conread position:294-773
               
               
               Cow position:chr8:28878406-28877927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 173

               
               
               Conread position:297-773
               
               
               Cow position:chr8:45692321-45691845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:309-771
               
               
               Cow position:chr8:56883218-56883675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:405-773
               
               
               Cow position:chr8:46147530-46147164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:411-771
               
               
               Cow position:chr8:49859950-49859588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 175

               
               
               Conread position:420-773
               
               
               Cow position:chr8:42579763-42579402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:474-771
               
               
               Cow position:chr8:61906037-61906334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:497-773
               
               
               Cow position:chr8:25417954-25417680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:502-750
               
               
               Cow position:chr8:38391565-38391811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:537-773
               
               
               Cow position:chr8:41644723-41644495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:559-728
               
               
               Cow position:chr8:46952898-46952731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):125, 42

               
               
               Conread position:559-776
               
               
               Cow position:chr8:4785905-4785692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:593-773
               
               
               Cow position:chr8:42158990-42158810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:611-773
               
               
               Cow position:chr8:42468677-42468839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 78

               
               
               Conread position:611-773
               
               
               Cow position:chr8:51666810-51666646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:617-773
               
               
               Cow position:chr8:19330733-19330889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:24-761
               
               
               Cow position:chr9:64119297-64120039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:25-341
               
               
               Cow position:chr9:3354615-3354290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:28-773
               
               
               Cow position:chr9:20309073-20308320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:49-527
               
               
               Cow position:chr9:28688186-28688687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:49-673
               
               
               Cow position:chr9:59425859-59426501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:49-767
               
               
               Cow position:chr9:44818277-44818976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:51-773
               
               
               Cow position:chr9:5514522-5515245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:53-498
               
               
               Cow position:chr9:13476795-13476326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:58-773
               
               
               Cow position:chr9:3566740-3566018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:65-773
               
               
               Cow position:chr9:9013217-9013922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:93-764
               
               
               Cow position:chr9:30487694-30488388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 493

               
               
               Conread position:93-773
               
               
               Cow position:chr9:42569041-42569731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 268

               
               
               Conread position:99-771
               
               
               Cow position:chr9:10321959-10322630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-772
               
               
               Cow position:chr9:59536246-59536923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr9:4532642-4533319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr9:7002933-7003627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr9:9705710-9706370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:99-773
               
               
               Cow position:chr9:16175918-16176597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr9:29028050-29027383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chr9:37162664-37161985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 137

               
               
               Conread position:99-773
               
               
               Cow position:chr9:37971059-37970368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:99-773
               
               
               Cow position:chr9:59174009-59173320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:99-773
               
               
               Cow position:chr9:60277871-60277187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-659
               
               
               Cow position:chr9:4281923-4282487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:103-773
               
               
               Cow position:chr9:7061939-7061254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:103-773
               
               
               Cow position:chr9:22653719-22654400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 456

               
               
               Conread position:103-773
               
               
               Cow position:chr9:47002342-47003021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 487

               
               
               Conread position:105-773
               
               
               Cow position:chr9:18509647-18508985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:105-773
               
               
               Cow position:chr9:51182038-51181357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:106-773
               
               
               Cow position:chr9:25187259-25187932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:109-757
               
               
               Cow position:chr9:7039510-7040158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:411
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:113-771
               
               
               Cow position:chr9:45873502-45874160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 499

               
               
               Conread position:115-247
               
               
               Cow position:chr9:3156188-3156322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:115-316
               
               
               Cow position:chr9:1995749-1995545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:115-762
               
               
               Cow position:chr9:5004159-5004788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:115-773
               
               
               Cow position:chr9:30672533-30673194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:115-773
               
               
               Cow position:chr9:42309848-42310508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:116-223
               
               
               Cow position:chr9:31020988-31021098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:116-771
               
               
               Cow position:chr9:36724663-36725326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:121-773
               
               
               Cow position:chr9:27034853-27035510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:127-771
               
               
               Cow position:chr9:780633-779983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 380

               
               
               Conread position:127-771
               
               
               Cow position:chr9:51210853-51211506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 445

               
               
               Conread position:130-773
               
               
               Cow position:chr9:28021978-28022632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:132-762
               
               
               Cow position:chr9:6249487-6250117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:140-750
               
               
               Cow position:chr9:30826866-30827482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:140-771
               
               
               Cow position:chr9:1251810-1251171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:154-762
               
               
               Cow position:chr9:53702520-53701915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:161-773
               
               
               Cow position:chr9:31807781-31808405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:163-773
               
               
               Cow position:chr9:3543054-3543686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 541

               
               
               Conread position:163-773
               
               
               Cow position:chr9:43664042-43664625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 22

               
               
               Conread position:168-771
               
               
               Cow position:chr9:50790928-50791538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 235

               
               
               Conread position:216-773
               
               
               Cow position:chr9:2867692-2867156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:346
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:236-773
               
               
               Cow position:chr9:32969234-32969775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 369

               
               
               Conread position:248-771
               
               
               Cow position:chr9:3763307-3763827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 157

               
               
               Conread position:249-773
               
               
               Cow position:chr9:828825-828307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 62

               
               
               Conread position:313-747
               
               
               Cow position:chr9:25633647-25633203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:380-724
               
               
               Cow position:chr9:27782652-27782987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:380-773
               
               
               Cow position:chr9:8401973-8402355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):164, 25

               
               
               Conread position:415-768
               
               
               Cow position:chr9:2476235-2476581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:461-773
               
               
               Cow position:chr9:17305460-17305149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 128

               
               
               Conread position:462-772
               
               
               Cow position:chr9:26102568-26102264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:462-773
               
               
               Cow position:chr9:2498462-2498167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:495-769
               
               
               Cow position:chr9:13475246-13474966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:496-771
               
               
               Cow position:chr9:31065270-31065544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 108

               
               
               Conread position:502-774
               
               
               Cow position:chr9:1980831-1981102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:537-770
               
               
               Cow position:chr9:25903108-25903336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):135, 50

               
               
               Conread position:555-773
               
               
               Cow position:chr9:4649982-4649766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:24-664
               
               
               Cow position:chrX:31081942-31082586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:25-594
               
               
               Cow position:chrX:17667921-17667325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:25-771
               
               
               Cow position:chrX:23019298-23020061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:35-772
               
               
               Cow position:chrX:6282761-6282026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:36-555
               
               
               Cow position:chrX:44387106-44387635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:44-406
               
               
               Cow position:chrX:24112827-24112463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:48-769
               
               
               Cow position:chrX:13053027-13053737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:49-777
               
               
               Cow position:chrX:13417417-13416696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:53-773
               
               
               Cow position:chrX:27960557-27961291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:89-312
               
               
               Cow position:chrX:28603412-28603190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:98-772
               
               
               Cow position:chrX:26767142-26766479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:99-332
               
               
               Cow position:chrX:22488238-22488473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:99-586
               
               
               Cow position:chrX:20697038-20696554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 17

               
               
               Conread position:99-701
               
               
               Cow position:chrX:21222985-21223588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-759
               
               
               Cow position:chrX:15127185-15126516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chrX:16699357-16700036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chrX:21829581-21830262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chrX:23041066-23040389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:99-773
               
               
               Cow position:chrX:26528033-26528709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:100-762
               
               
               Cow position:chrX:20797036-20797690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:100-773
               
               
               Cow position:chrX:2482580-2481896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:101-227
               
               
               Cow position:chrX:26627974-26627843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:103-773
               
               
               Cow position:chrX:23277079-23277760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:105-380
               
               
               Cow position:chrX:30056707-30056993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:105-773
               
               
               Cow position:chrX:320529-321199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 67

               
               
               Conread position:105-773
               
               
               Cow position:chrX:970829-971509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 428

               
               
               Conread position:105-773
               
               
               Cow position:chrX:21058855-21059515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:106-773
               
               
               Cow position:chrX:29853504-29852831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:110-772
               
               
               Cow position:chrX:29285504-29286162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 198

               
               
               Conread position:117-776
               
               
               Cow position:chrX:22619241-22618562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 503

               
               
               Conread position:119-632
               
               
               Cow position:chrX:26427571-26427056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 236

               
               
               Conread position:121-671
               
               
               Cow position:chrX:29794040-29793491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:121-671
               
               
               Cow position:chrX:30173601-30173040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 495

               
               
               Conread position:121-771
               
               
               Cow position:chrX:5863468-5864126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 218

               
               
               Conread position:121-773
               
               
               Cow position:chrX:13413061-13412398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:127-696
               
               
               Cow position:chrX:20359974-20359394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 485

               
               
               Conread position:127-756
               
               
               Cow position:chrX:7751977-7752623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:127-768
               
               
               Cow position:chrX:13076620-13075969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 429

               
               
               Conread position:127-771
               
               
               Cow position:chrX:12353317-12353973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 485

               
               
               Conread position:127-771
               
               
               Cow position:chrX:13097194-13096540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 429

               
               
               Conread position:127-771
               
               
               Cow position:chrX:27426243-27425594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 485

               
               
               Conread position:127-771
               
               
               Cow position:chrX:28585057-28585711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:127-771
               
               
               Cow position:chrX:31493497-31494150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 324

               
               
               Conread position:132-771
               
               
               Cow position:chrX:31198529-31199183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 479

               
               
               Conread position:133-771
               
               
               Cow position:chrX:7481715-7482364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 479

               
               
               Conread position:135-771
               
               
               Cow position:chrX:5394916-5394278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 234

               
               
               Conread position:142-771
               
               
               Cow position:chrX:15980858-15980227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 279

               
               
               Conread position:142-773
               
               
               Cow position:chrX:29950492-29949873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 336

               
               
               Conread position:163-773
               
               
               Cow position:chrX:1547096-1547707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 248

               
               
               Conread position:164-773
               
               
               Cow position:chrX:20720106-20720729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 443

               
               
               Conread position:165-773
               
               
               Cow position:chrX:21589091-21589701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 343

               
               
               Conread position:167-773
               
               
               Cow position:chrX:21579595-21580199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:168-771
               
               
               Cow position:chrX:12288274-12287672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 200

               
               
               Conread position:174-668
               
               
               Cow position:chrX:27495055-27495546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:185-773
               
               
               Cow position:chrX:30711727-30712321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 272

               
               
               Conread position:192-773
               
               
               Cow position:chrX:41851049-41850465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:196-774
               
               
               Cow position:chrX:4796458-4797059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:238-773
               
               
               Cow position:chrX:28651352-28650820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 147

               
               
               Conread position:243-773
               
               
               Cow position:chrX:15599167-15599699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:247-771
               
               
               Cow position:chrX:17478224-17477693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 65

               
               
               Conread position:260-773
               
               
               Cow position:chrX:16016210-16015704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 166

               
               
               Conread position:275-743
               
               
               Cow position:chrX:6884833-6884366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:276-773
               
               
               Cow position:chrX:28627408-28626901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:308-773
               
               
               Cow position:chrX:24134994-24134518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:313-771
               
               
               Cow position:chrX:29173495-29173031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 294

               
               
               Conread position:345-673
               
               
               Cow position:chrX:38038555-38038878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:376-773
               
               
               Cow position:chrX:18953346-18952947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 5

               
               
               Conread position:380-771
               
               
               Cow position:chrX:28758157-28757763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 224

               
               
               Conread position:380-773
               
               
               Cow position:chrX:22488489-22488879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:395-773
               
               
               Cow position:chrX:22816204-22816583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:400-773
               
               
               Cow position:chrX:30366409-30366048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 49

               
               
               Conread position:439-771
               
               
               Cow position:chrX:30171436-30171101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 45

               
               
               Conread position:439-773
               
               
               Cow position:chrX:16041791-16041471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 66

               
               
               Conread position:451-773
               
               
               Cow position:chrX:30183509-30183186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 149

               
               
               Conread position:459-734
               
               
               Cow position:chrX:22129355-22129080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 139

               
               
               Conread position:464-773
               
               
               Cow position:chrX:5297122-5296815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:480-769
               
               
               Cow position:chrX:14595294-14595575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:485-762
               
               
               Cow position:chrX:12315308-12315033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:488-771
               
               
               Cow position:chrX:16811994-16811711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:488-773
               
               
               Cow position:chrX:23390068-23389783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:496-773
               
               
               Cow position:chrX:38148051-38148324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:501-734
               
               
               Cow position:chrX:31372279-31372508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:502-773
               
               
               Cow position:chrX:18610932-18610666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:511-710
               
               
               Cow position:chrX:18534979-18535173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:528-773
               
               
               Cow position:chrX:19874882-19875124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 70

               
               
               Conread position:530-773
               
               
               Cow position:chrX:27315767-27316008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:549-773
               
               
               Cow position:chrX:9093063-9093292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:576-770
               
               
               Cow position:chrX:12183455-12183648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:611-763
               
               
               Cow position:chrX:13082437-13082284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:617-771
               
               
               Cow position:chrX:979172-979327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 0
Conread position:	5-252
Cow position:	chr1:86610039-86610289 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	186
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	11, 18
Conread position:	25-247
Cow position:	chr1:77656312-77656537 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	158
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	8, 32
Conread position:	25-671
Cow position:	chr1:55321927-55321278 (view UCSC Genome Browser custom track)
Alignm length:	673
Alignm identity:	482
Alignm E-value:	0
Alignm gaps (pig, cow):	30, 8
Conread position:	25-743
Cow position:	chr1:88269993-88269287 (view UCSC Genome Browser custom track)
Alignm length:	741
Alignm identity:	501
Alignm E-value:	0
Alignm gaps (pig, cow):	37, 8
Conread position:	49-248
Cow position:	chr1:38387102-38386900 (view UCSC Genome Browser custom track)
Alignm length:	210
Alignm identity:	161
Alignm E-value:	7e-31
Alignm gaps (pig, cow):	115, 46
Conread position:	49-773
Cow position:	chr1:67287077-67287800 (view UCSC Genome Browser custom track)
Alignm length:	742
Alignm identity:	539
Alignm E-value:	0
Alignm gaps (pig, cow):	70, 43
Conread position:	50-439
Cow position:	chr1:40512802-40512406 (view UCSC Genome Browser custom track)
Alignm length:	404
Alignm identity:	309
Alignm E-value:	0
Alignm gaps (pig, cow):	52, 42
Conread position:	78-773
Cow position:	chr1:8825334-8826027 (view UCSC Genome Browser custom track)
Alignm length:	712
Alignm identity:	514
Alignm E-value:	0
Alignm gaps (pig, cow):	89, 18
Conread position:	93-771
Cow position:	chr1:23052087-23052740 (view UCSC Genome Browser custom track)
Alignm length:	688
Alignm identity:	478
Alignm E-value:	0
Alignm gaps (pig, cow):	87, 28
Conread position:	98-760
Cow position:	chr1:63605475-63604810 (view UCSC Genome Browser custom track)
Alignm length:	679
Alignm identity:	517
Alignm E-value:	0
Alignm gaps (pig, cow):	69, 15
Conread position:	98-771
Cow position:	chr1:61309524-61310198 (view UCSC Genome Browser custom track)
Alignm length:	678
Alignm identity:	239
Alignm E-value:	0
Alignm gaps (pig, cow):	421, 503
Conread position:	98-773
Cow position:	chr1:56144037-56143357 (view UCSC Genome Browser custom track)
Alignm length:	691
Alignm identity:	510
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 39
Conread position:	99-767
Cow position:	chr1:3385718-3385052 (view UCSC Genome Browser custom track)
Alignm length:	681
Alignm identity:	503
Alignm E-value:	0
Alignm gaps (pig, cow):	68, 6
Conread position:	99-773
Cow position:	chr1:25179728-25179050 (view UCSC Genome Browser custom track)
Alignm length:	688
Alignm identity:	522
Alignm E-value:	0
Alignm gaps (pig, cow):	130, 6
Conread position:	100-594
Cow position:	chr1:29033418-29033924 (view UCSC Genome Browser custom track)
Alignm length:	517
Alignm identity:	358
Alignm E-value:	0
Alignm gaps (pig, cow):	43, 12
Conread position:	100-773
Cow position:	chr1:12061910-12061234 (view UCSC Genome Browser custom track)
Alignm length:	692
Alignm identity:	504
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 22
Conread position:	103-754
Cow position:	chr1:79456668-79456010 (view UCSC Genome Browser custom track)
Alignm length:	666
Alignm identity:	492
Alignm E-value:	0
Alignm gaps (pig, cow):	64, 314
Conread position:	103-773
Cow position:	chr1:33551228-33551906 (view UCSC Genome Browser custom track)
Alignm length:	685
Alignm identity:	517
Alignm E-value:	0
Alignm gaps (pig, cow):	41, 314
Conread position:	105-247
Cow position:	chr1:69537204-69537350 (view UCSC Genome Browser custom track)
Alignm length:	147
Alignm identity:	117
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	38, 0
Conread position:	105-326
Cow position:	chr1:33712371-33712596 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	180
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 182