• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
LyN1-MLN01B080092
        

               
Conread position:
               
450-694
               

               
Cow position:
               
chr1:72037111-72036871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
450-716
               

               
Cow position:
               
chr1:9260675-9260938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr1:86704322-86704585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
454-716
               

               
Cow position:
               
chr1:20831032-20831287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
210, 81
               

               
Conread position:
               
454-716
               

               
Cow position:
               
chr1:56725334-56725594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
455-721
               

               
Cow position:
               
chr1:73763418-73763158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
457-718
               

               
Cow position:
               
chr1:23970779-23970522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
458-694
               

               
Cow position:
               
chr1:56165708-56165942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 69
               

               
Conread position:
               
460-720
               

               
Cow position:
               
chr1:57948243-57948498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
96, 67
               

               
Conread position:
               
461-712
               

               
Cow position:
               
chr1:41780926-41780682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
188, 66
               

               
Conread position:
               
462-721
               

               
Cow position:
               
chr1:81869547-81869285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 88
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr1:27543328-27543577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
471-719
               

               
Cow position:
               
chr1:88675674-88675916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
472-669
               

               
Cow position:
               
chr1:89483332-89483521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
472-686
               

               
Cow position:
               
chr1:17189447-17189235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-708
               

               
Cow position:
               
chr1:82526572-82526801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr1:69768771-69769006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:4210308-4210552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:10724813-10725057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:15437727-15437482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:28713232-28713476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:39545970-39546214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:55274844-55274603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:56620428-56620672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:59206880-59206636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
192, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:65570909-65570665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:67000723-67000479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:82910630-82910388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:90973143-90973386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr1:100508940-100509188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
170, 61
               

               
Conread position:
               
478-708
               

               
Cow position:
               
chr1:53395710-53395938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr1:11856075-11855844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
186, 49
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr1:100605278-100605040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
479-719
               

               
Cow position:
               
chr1:76094662-76094424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
480-721
               

               
Cow position:
               
chr1:30439045-30439283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr1:55329191-55328963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr1:82367952-82368181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
492-677
               

               
Cow position:
               
chr1:21221882-21221703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 33
               

               
Conread position:
               
492-719
               

               
Cow position:
               
chr1:79254277-79254505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
528-717
               

               
Cow position:
               
chr1:99108996-99108804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
528-719
               

               
Cow position:
               
chr1:92281357-92281172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
108, 70
               

               
Conread position:
               
528-721
               

               
Cow position:
               
chr1:51966518-51966714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
531-719
               

               
Cow position:
               
chr1:77164731-77164912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
534-721
               

               
Cow position:
               
chr1:99017811-99017624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr10:20368938-20368691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 85
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr10:44706508-44706250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
212, 83
               

               
Conread position:
               
454-719
               

               
Cow position:
               
chr10:39209959-39210221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
210, 81
               

               
Conread position:
               
455-719
               

               
Cow position:
               
chr10:37127586-37127327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
209, 78
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr10:41654504-41654758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
212, 63
               

               
Conread position:
               
459-714
               

               
Cow position:
               
chr10:36467657-36467404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr10:48396911-48396655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr10:48745610-48745354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
461-695
               

               
Cow position:
               
chr10:31045335-31045107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr10:51781222-51780987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
472-689
               

               
Cow position:
               
chr10:31022679-31022465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-715
               

               
Cow position:
               
chr10:12546201-12546441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr10:25564336-25564098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:5868338-5868103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:6286963-6287207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
191, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:13851360-13851604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:17958298-17958542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
192, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:19841903-19842130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:23848179-23848423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:53173104-53172860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr10:55095487-55095728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
193, 55
               

               
Conread position:
               
473-643
               

               
Cow position:
               
chr10:42642808-42642972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
478-718
               

               
Cow position:
               
chr10:39877217-39876980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr10:55400976-55401215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
480-714
               

               
Cow position:
               
chr10:36448380-36448610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
188, 37
               

               
Conread position:
               
520-719
               

               
Cow position:
               
chr10:31540623-31540820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr11:2349782-2350048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr11:32478972-32478717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
242, 81
               

               
Conread position:
               
455-719
               

               
Cow position:
               
chr11:20732384-20732127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
209, 78
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr11:22934752-22934494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
462-678
               

               
Cow position:
               
chr11:42310592-42310385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
472-695
               

               
Cow position:
               
chr11:261828-261613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-708
               

               
Cow position:
               
chr11:44232314-44232535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr11:17105827-17105589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:3494836-3495080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:15987108-15987352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:19062215-19061979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
222, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:23415343-23415103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
192, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:32453913-32454157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:57626322-57626078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:67446388-67446144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:75392104-75392348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr11:84965969-84966213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
478-672
               

               
Cow position:
               
chr11:18069115-18068924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
478-718
               

               
Cow position:
               
chr11:13064121-13063889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr11:27936993-27937229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
201, 49
               

               
Conread position:
               
478-721
               

               
Cow position:
               
chr11:7317780-7318018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
481-716
               

               
Cow position:
               
chr11:78671991-78671759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
484-718
               

               
Cow position:
               
chr11:83325835-83325606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
182, 43
               

               
Conread position:
               
488-669
               

               
Cow position:
               
chr11:84962278-84962453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr12:22592866-22593083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr12:15949681-15949424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 70
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr12:30685868-30686127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
207, 70
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr12:24432746-24432505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
161, 54
               

               
Conread position:
               
470-678
               

               
Cow position:
               
chr12:8675938-8675738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
471-718
               

               
Cow position:
               
chr12:8844362-8844118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
196, 56
               

               
Conread position:
               
472-663
               

               
Cow position:
               
chr12:21427443-21427258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr12:14214032-14213788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr12:24993832-24993588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr12:33926384-33926140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-721
               

               
Cow position:
               
chr12:24979825-24980066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr12:29445881-29446108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr12:757610-757837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
183, 33
               

               
Conread position:
               
440-719
               

               
Cow position:
               
chr13:36348218-36347946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 87
               

               
Conread position:
               
443-719
               

               
Cow position:
               
chr13:30653384-30653112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 84
               

               
Conread position:
               
450-710
               

               
Cow position:
               
chr13:60647675-60647417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr13:42089779-42089516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
218, 81
               

               
Conread position:
               
453-719
               

               
Cow position:
               
chr13:50111377-50111640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
215, 80
               

               
Conread position:
               
454-713
               

               
Cow position:
               
chr13:14523241-14522981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
73, 96
               

               
Conread position:
               
457-718
               

               
Cow position:
               
chr13:44325047-44324787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr13:54312012-54312274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr13:12566542-12566294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
465-718
               

               
Cow position:
               
chr13:3481936-3481689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
203, 74
               

               
Conread position:
               
468-718
               

               
Cow position:
               
chr13:20767828-20768073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr13:7049575-7049812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
208, 54
               

               
Conread position:
               
470-715
               

               
Cow position:
               
chr13:32548685-32548927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
194, 63
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr13:30305123-30305365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
194, 50
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr13:3023345-3023109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr13:11389134-11389378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr13:16252588-16252350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
192, 45
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr13:16921388-16921632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr13:33524029-33523785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr13:49613606-49613362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
477-718
               

               
Cow position:
               
chr13:19395074-19394844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr13:21400772-21401012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
184, 78
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr13:25381338-25381576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr13:34509874-34509639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
190, 49
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr13:34939349-34939584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
478-721
               

               
Cow position:
               
chr13:46459976-46459741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr13:11827782-11827553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr13:54239486-54239259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
442-719
               

               
Cow position:
               
chr14:50142742-50143013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr14:17489548-17489283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr14:9450750-9450489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
213, 81
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr14:13275105-13275360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
205, 74
               

               
Conread position:
               
465-719
               

               
Cow position:
               
chr14:1660250-1660497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
467-719
               

               
Cow position:
               
chr14:46469392-46469146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
161, 60
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr14:30665782-30665538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
205, 47
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr14:33392124-33391883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
189, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr14:19548999-19549240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr14:27065959-27065722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr14:29045874-29045636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr14:44229094-44229338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr14:46221882-46222126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
473-719
               

               
Cow position:
               
chr14:13861713-13861475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
478-678
               

               
Cow position:
               
chr14:25693740-25693934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr14:33490638-33490869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
189, 55
               

               
Conread position:
               
478-721
               

               
Cow position:
               
chr14:38813681-38813429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
479-719
               

               
Cow position:
               
chr14:35931182-35931419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
189, 48
               

               
Conread position:
               
484-694
               

               
Cow position:
               
chr14:13463251-13463457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
484-716
               

               
Cow position:
               
chr14:42121767-42121538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
443-719
               

               
Cow position:
               
chr15:20405963-20405690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
221, 84
               

               
Conread position:
               
450-661
               

               
Cow position:
               
chr15:4080444-4080239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
105, 77
               

               
Conread position:
               
450-716
               

               
Cow position:
               
chr15:25552770-25553028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
106, 74
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr15:6382368-6382106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
217, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr15:8101237-8101501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr15:17075639-17075375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr15:480364-480625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
210, 85
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr15:40062984-40063241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
458-715
               

               
Cow position:
               
chr15:5939874-5939620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
206, 75
               

               
Conread position:
               
469-710
               

               
Cow position:
               
chr15:9431733-9431971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
470-670
               

               
Cow position:
               
chr15:6329851-6330040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
470-678
               

               
Cow position:
               
chr15:35645890-35645687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 73
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr15:8752697-8752941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
197, 63
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr15:24296993-24297239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:6614825-6615066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:7262418-7262658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:10825274-10825513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:13429626-13429868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:16189968-16189724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:18228866-18229110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr15:31586595-31586351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr15:13389546-13389309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
88, 49
               

               
Conread position:
               
480-712
               

               
Cow position:
               
chr15:21914167-21913939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
531-718
               

               
Cow position:
               
chr15:41358490-41358661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
450-718
               

               
Cow position:
               
chr16:818143-818409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr16:51086217-51086479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
470-647
               

               
Cow position:
               
chr16:2481692-2481517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
167, 63
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr16:42162199-42162445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
472-708
               

               
Cow position:
               
chr16:2237315-2237082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
192, 63
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr16:20192713-20192481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr16:46521596-46521352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
196, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr16:47787411-47787655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
481-719
               

               
Cow position:
               
chr16:16239633-16239401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
484-716
               

               
Cow position:
               
chr16:32325319-32325547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr16:25259273-25259502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
488-719
               

               
Cow position:
               
chr16:55149708-55149931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
493-718
               

               
Cow position:
               
chr16:41572874-41573094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
450-716
               

               
Cow position:
               
chr17:11784892-11785155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
452-715
               

               
Cow position:
               
chr17:20490323-20490580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
453-719
               

               
Cow position:
               
chr17:4084027-4084285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 74
               

               
Conread position:
               
453-719
               

               
Cow position:
               
chr17:23322425-23322162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
212, 80
               

               
Conread position:
               
454-701
               

               
Cow position:
               
chr17:19367660-19367904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr17:2175985-2176245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
185, 82
               

               
Conread position:
               
458-719
               

               
Cow position:
               
chr17:2032244-2032496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
461-721
               

               
Cow position:
               
chr17:22561917-22562172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
203, 66
               

               
Conread position:
               
470-716
               

               
Cow position:
               
chr17:3235982-3236212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
472-663
               

               
Cow position:
               
chr17:39050462-39050647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-685
               

               
Cow position:
               
chr17:36284056-36284266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr17:27792747-27792525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr17:2554240-2553996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr17:8210675-8210916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr17:15709972-15709728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr17:34574778-34575023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr17:18124902-18124678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
478-718
               

               
Cow position:
               
chr17:18590463-18590692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
450-694
               

               
Cow position:
               
chr18:24618363-24618604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr18:40158545-40158807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr18:51344327-51344585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
243, 76
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr18:54026026-54026284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
455-721
               

               
Cow position:
               
chr18:29070671-29070934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
210, 78
               

               
Conread position:
               
469-717
               

               
Cow position:
               
chr18:38091109-38090867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
197, 50
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr18:32769983-32770224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
470-717
               

               
Cow position:
               
chr18:37156510-37156256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
472-674
               

               
Cow position:
               
chr18:9722846-9723043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr18:16464618-16464379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
222, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr18:19354606-19354844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr18:27167866-27168110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr18:30762721-30762477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr18:51460601-51460360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr18:9660962-9661197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
479-718
               

               
Cow position:
               
chr18:5077821-5077585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
187, 48
               

               
Conread position:
               
492-719
               

               
Cow position:
               
chr18:46875135-46874912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
528-718
               

               
Cow position:
               
chr18:15171168-15171356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
443-678
               

               
Cow position:
               
chr19:375483-375254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
446-719
               

               
Cow position:
               
chr19:3141849-3142119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
450-716
               

               
Cow position:
               
chr19:774843-775105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
453-719
               

               
Cow position:
               
chr19:5731737-5731996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
455-710
               

               
Cow position:
               
chr19:40835035-40834784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
203, 78
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr19:15445630-15445378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
97, 68
               

               
Conread position:
               
461-702
               

               
Cow position:
               
chr19:28789777-28789537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
462-716
               

               
Cow position:
               
chr19:42582052-42581807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr19:36418212-36418457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
192, 58
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr19:20610573-20610819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
195, 63
               

               
Conread position:
               
472-642
               

               
Cow position:
               
chr19:3014893-3014729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-714
               

               
Cow position:
               
chr19:40885502-40885265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr19:5899262-5899021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
190, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr19:16318366-16318122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr19:22511530-22511289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
187, 61
               

               
Conread position:
               
474-626
               

               
Cow position:
               
chr19:42723653-42723799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
478-696
               

               
Cow position:
               
chr19:39749514-39749719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
479-719
               

               
Cow position:
               
chr19:16129623-16129844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
480-719
               

               
Cow position:
               
chr19:35382896-35382666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
186, 39
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr19:33649932-33649699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
518-718
               

               
Cow position:
               
chr19:34031648-34031851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
445-719
               

               
Cow position:
               
chr2:52498414-52498146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
450-708
               

               
Cow position:
               
chr2:74492967-74492716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
106, 79
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr2:62730189-62730455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
452-710
               

               
Cow position:
               
chr2:52161198-52160946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
215, 81
               

               
Conread position:
               
453-676
               

               
Cow position:
               
chr2:32433659-32433447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
454-719
               

               
Cow position:
               
chr2:42331178-42330916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr2:20871802-20871542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 100
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr2:20891156-20890899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
459-697
               

               
Cow position:
               
chr2:39691528-39691757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr2:43757965-43757708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr2:16332596-16332842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
461-719
               

               
Cow position:
               
chr2:57337635-57337889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
203, 72
               

               
Conread position:
               
469-678
               

               
Cow position:
               
chr2:48815952-48816156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr2:52064444-52064689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
194, 53
               

               
Conread position:
               
472-678
               

               
Cow position:
               
chr2:9188364-9188164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
472-694
               

               
Cow position:
               
chr2:59423198-59423417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:4452056-4452300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:6005158-6004904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 86
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:6640494-6640738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:26904089-26903848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:34500729-34500485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:46908762-46908517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr2:59412054-59411810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr2:11694132-11694361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr2:74859675-74859913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
198, 59
               

               
Conread position:
               
480-718
               

               
Cow position:
               
chr2:60367090-60366863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
75, 53
               

               
Conread position:
               
480-719
               

               
Cow position:
               
chr2:25757283-25757048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
519-719
               

               
Cow position:
               
chr2:8120430-8120633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
534-721
               

               
Cow position:
               
chr2:48359695-48359885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr20:29758088-29757829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
208, 75
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr20:30430464-30430720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
207, 76
               

               
Conread position:
               
458-708
               

               
Cow position:
               
chr20:3678113-3677873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
110, 85
               

               
Conread position:
               
459-698
               

               
Cow position:
               
chr20:20752646-20752408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr20:12436191-12435948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
198, 63
               

               
Conread position:
               
472-691
               

               
Cow position:
               
chr20:6906146-6905930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr20:15602556-15602313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
193, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr20:19440123-19440364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr20:24541633-24541874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr20:33598649-33598882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
478-692
               

               
Cow position:
               
chr20:19366928-19366719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
190, 49
               

               
Conread position:
               
478-715
               

               
Cow position:
               
chr20:18322767-18322540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
480-718
               

               
Cow position:
               
chr20:13500522-13500748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
445-719
               

               
Cow position:
               
chr21:4899886-4899616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
223, 88
               

               
Conread position:
               
450-635
               

               
Cow position:
               
chr21:24886037-24886215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr21:7063375-7063109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr21:39427371-39427637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
453-663
               

               
Cow position:
               
chr21:4737971-4738177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr21:28987448-28987699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
461-719
               

               
Cow position:
               
chr21:44253926-44254183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
462-708
               

               
Cow position:
               
chr21:36978597-36978353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
472-702
               

               
Cow position:
               
chr21:42916124-42916352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
190, 61
               

               
Conread position:
               
472-715
               

               
Cow position:
               
chr21:19613078-19613318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr21:11507928-11508171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr21:32397734-32397490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr21:36375305-36375549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
472-721
               

               
Cow position:
               
chr21:29949646-29949400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
478-678
               

               
Cow position:
               
chr21:29003002-29002807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-718
               

               
Cow position:
               
chr21:22462518-22462754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr21:11291012-11291249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
186, 55
               

               
Conread position:
               
479-721
               

               
Cow position:
               
chr21:38024425-38024660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
77, 50
               

               
Conread position:
               
528-719
               

               
Cow position:
               
chr21:37150572-37150766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
443-719
               

               
Cow position:
               
chr22:325049-324773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
451-716
               

               
Cow position:
               
chr22:50162-50420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
213, 65
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr22:35905036-35904784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
453-666
               

               
Cow position:
               
chr22:15953137-15953344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
454-719
               

               
Cow position:
               
chr22:36185754-36186017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
456-616
               

               
Cow position:
               
chr22:36562313-36562158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
456-710
               

               
Cow position:
               
chr22:10561481-10561723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
238, 73
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr22:26106004-26105763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
194, 57
               

               
Conread position:
               
472-717
               

               
Cow position:
               
chr22:36544805-36544566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
196, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr22:980434-980678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr22:11802905-11802661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr22:18614430-18614674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr22:40372555-40372807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
164, 55
               

               
Conread position:
               
473-719
               

               
Cow position:
               
chr22:41473548-41473299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
164, 64
               

               
Conread position:
               
480-715
               

               
Cow position:
               
chr22:36573869-36573632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
488-717
               

               
Cow position:
               
chr22:36585682-36585456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
440-672
               

               
Cow position:
               
chr23:2578097-2578325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
450-712
               

               
Cow position:
               
chr23:14971828-14971570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
217, 69
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr23:943095-943359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr23:38579798-38580044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
458-719
               

               
Cow position:
               
chr23:16612669-16612411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
97, 66
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr23:3878943-3878698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
194, 63
               

               
Conread position:
               
472-656
               

               
Cow position:
               
chr23:4102120-4101942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr23:21792331-21792096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr23:41142483-41142724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr23:3708545-3708785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr23:7313955-7313711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr23:11713721-11713477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
473-694
               

               
Cow position:
               
chr23:16497109-16496895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr23:17877762-17877530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
443-719
               

               
Cow position:
               
chr24:7063766-7064035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
222, 90
               

               
Conread position:
               
450-715
               

               
Cow position:
               
chr24:6069652-6069390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
218, 83
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr24:12698809-12698545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
213, 81
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr24:12126880-12126622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 77
               

               
Conread position:
               
472-649
               

               
Cow position:
               
chr24:18212595-18212766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-678
               

               
Cow position:
               
chr24:6962515-6962313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-709
               

               
Cow position:
               
chr24:16082259-16082025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr24:6439981-6440225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr24:13190400-13190644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr24:40550855-40551096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
477-719
               

               
Cow position:
               
chr24:17454897-17454658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
188, 56
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr24:18268249-18268014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 50
               

               
Conread position:
               
479-708
               

               
Cow position:
               
chr24:14174495-14174269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr24:17312480-17312259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
489-720
               

               
Cow position:
               
chr24:42583518-42583297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
528-716
               

               
Cow position:
               
chr24:36037933-36037745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 171
               

               
Conread position:
               
531-698
               

               
Cow position:
               
chr24:17957281-17957113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr25:34510839-34510577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
215, 77
               

               
Conread position:
               
451-714
               

               
Cow position:
               
chr25:21966152-21966412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
458-721
               

               
Cow position:
               
chr25:18250745-18250485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
463-657
               

               
Cow position:
               
chr25:36635548-36635359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
467-719
               

               
Cow position:
               
chr25:34344781-34344532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr25:28861801-28862045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
195, 64
               

               
Conread position:
               
470-710
               

               
Cow position:
               
chr25:15366091-15366326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
470-717
               

               
Cow position:
               
chr25:32897829-32898056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr25:11828785-11828548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
471-719
               

               
Cow position:
               
chr25:24656508-24656263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
193, 62
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr25:11042551-11042790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr25:29358958-29359199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
477-719
               

               
Cow position:
               
chr25:29803845-29803609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
190, 56
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr26:8281507-8281256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 74
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr26:9114073-9114338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr26:4327247-4326993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 90
               

               
Conread position:
               
453-719
               

               
Cow position:
               
chr26:12586359-12586106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
211, 80
               

               
Conread position:
               
464-719
               

               
Cow position:
               
chr26:17394709-17394461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
200, 69
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr26:2349989-2349746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr26:2418215-2417971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr26:3028446-3028202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr26:12667638-12667892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
133, 239
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr26:30784954-30785198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chr26:13772720-13772486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
481-719
               

               
Cow position:
               
chr26:4602959-4602724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr27:3995773-3995510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
215, 94
               

               
Conread position:
               
454-641
               

               
Cow position:
               
chr27:13352439-13352617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 89
               

               
Conread position:
               
469-710
               

               
Cow position:
               
chr27:1211504-1211738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
472-673
               

               
Cow position:
               
chr27:4803050-4802852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-673
               

               
Cow position:
               
chr27:21453567-21453765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-677
               

               
Cow position:
               
chr27:1676424-1676226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr27:66668-66424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr27:22743244-22743003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
473-718
               

               
Cow position:
               
chr27:6016576-6016817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
479-709
               

               
Cow position:
               
chr27:27194195-27193973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
484-717
               

               
Cow position:
               
chr27:25085707-25085933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
184, 55
               

               
Conread position:
               
485-710
               

               
Cow position:
               
chr27:26553285-26553063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
183, 42
               

               
Conread position:
               
450-613
               

               
Cow position:
               
chr28:1768593-1768748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr28:24560077-24560340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 82
               

               
Conread position:
               
452-719
               

               
Cow position:
               
chr28:24591035-24591299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
212, 68
               

               
Conread position:
               
453-721
               

               
Cow position:
               
chr28:25675835-25675571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
467-715
               

               
Cow position:
               
chr28:31849742-31849496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr28:22578917-22579169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
470-712
               

               
Cow position:
               
chr28:2086654-2086889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
197, 63
               

               
Conread position:
               
472-708
               

               
Cow position:
               
chr28:1460290-1460523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr28:21894136-21894377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr28:22041208-22040968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
222, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr28:24885042-24885286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr28:30805955-30806199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr28:32588847-32588603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
193, 60
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr28:34730116-34730360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
478-718
               

               
Cow position:
               
chr28:8785625-8785864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr28:1385239-1385008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
479-719
               

               
Cow position:
               
chr28:5815573-5815803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
479-719
               

               
Cow position:
               
chr28:15674508-15674740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
480-672
               

               
Cow position:
               
chr28:16684010-16684202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
481-719
               

               
Cow position:
               
chr28:21568099-21568334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
185, 45
               

               
Conread position:
               
484-719
               

               
Cow position:
               
chr28:15588313-15588541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
445-664
               

               
Cow position:
               
chr29:15945705-15945492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr29:32642378-32642641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 93
               

               
Conread position:
               
452-718
               

               
Cow position:
               
chr29:19733360-19733617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
104, 75
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr29:15624562-15624306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
204, 73
               

               
Conread position:
               
468-719
               

               
Cow position:
               
chr29:40470564-40470809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
197, 65
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr29:409105-408862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr29:20253325-20253563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
472-678
               

               
Cow position:
               
chr29:1477315-1477515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:7846547-7846791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:13922659-13922903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:15260837-15260593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:15967401-15967157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:19526133-19525892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:19889732-19889973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr29:31095434-31095191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
473-714
               

               
Cow position:
               
chr29:16688988-16689226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
477-719
               

               
Cow position:
               
chr29:27977671-27977424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
478-694
               

               
Cow position:
               
chr29:7750690-7750477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
199, 51
               

               
Conread position:
               
478-716
               

               
Cow position:
               
chr29:17407290-17407532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
480-718
               

               
Cow position:
               
chr29:4518065-4518299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
434-719
               

               
Cow position:
               
chr3:6323686-6323968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
231, 99
               

               
Conread position:
               
445-719
               

               
Cow position:
               
chr3:63240182-63239915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
450-716
               

               
Cow position:
               
chr3:19882539-19882783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
244, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr3:20380679-20380413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr3:48524793-48525057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
212, 77
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr3:1031020-1031282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 76
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr3:41208550-41208285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
213, 82
               

               
Conread position:
               
452-655
               

               
Cow position:
               
chr3:67770470-67770668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
453-708
               

               
Cow position:
               
chr3:59331490-59331735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr3:56337901-56337641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
100, 67
               

               
Conread position:
               
456-719
               

               
Cow position:
               
chr3:72670500-72670243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr3:15053651-15053402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
459-718
               

               
Cow position:
               
chr3:79600126-79599881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr3:2870850-2871107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
206, 74
               

               
Conread position:
               
459-719
               

               
Cow position:
               
chr3:3982689-3982946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
469-719
               

               
Cow position:
               
chr3:63278548-63278307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 64
               

               
Conread position:
               
470-719
               

               
Cow position:
               
chr3:83766317-83766563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
195, 63
               

               
Conread position:
               
472-678
               

               
Cow position:
               
chr3:77425771-77425984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 188
               

               
Conread position:
               
472-714
               

               
Cow position:
               
chr3:77580694-77580924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-716
               

               
Cow position:
               
chr3:70719584-70719825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:4288151-4288395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:7156644-7156400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:13035756-13036000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:18113620-18113376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:19799086-19798842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:27920516-27920760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:28670156-28670399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:29329216-29328972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:30990178-30989934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:34505279-34505036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
190, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:37010112-37009868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:38495844-38496083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:46859218-46858974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:49003237-49003481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:68697901-68697657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr3:68890502-68890261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
189, 61
               

               
Conread position:
               
472-721
               

               
Cow position:
               
chr3:40338073-40337827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
473-719
               

               
Cow position:
               
chr3:70889356-70889591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
195, 46
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr3:15657465-15657229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
186, 55
               

               
Conread position:
               
480-717
               

               
Cow position:
               
chr3:18760319-18760095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
484-678
               

               
Cow position:
               
chr3:1886343-1886156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
520-694
               

               
Cow position:
               
chr3:13467130-13466961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
528-718
               

               
Cow position:
               
chr3:52662520-52662712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
539-717
               

               
Cow position:
               
chr3:40102668-40102494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr4:1928769-1928506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
214, 83
               

               
Conread position:
               
450-719
               

               
Cow position:
               
chr4:59356981-59356720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
243, 87
               

               
Conread position:
               
451-719
               

               
Cow position:
               
chr4:161023-161286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
216, 82
               

               
Conread position:
               
454-718
               

               
Cow position:
               
chr4:44900137-44900393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
454-719
               

               
Cow position:
               
chr4:33021773-33021511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
211, 79
               

               
Conread position:
               
457-718
               

               
Cow position:
               
chr4:65917104-65917355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
462-719
               

               
Cow position:
               
chr4:48028726-48028977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
206, 65
               

               
Conread position:
               
471-718
               

               
Cow position:
               
chr4:4183707-4183948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
195, 56
               

               
Conread position:
               
472-644
               

               
Cow position:
               
chr4:14387694-14387860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
472-678
               

               
Cow position:
               
chr4:51859357-51859559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-710
               

               
Cow position:
               
chr4:41473968-41473731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
119, 61
               

               
Conread position:
               
472-715
               

               
Cow position:
               
chr4:6864354-6864116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr4:6267340-6267097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
193, 55
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr4:16061153-16061397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr4:27335809-27336053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
192, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr4:29605602-29605358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
472-719
               

               
Cow position:
               
chr4:58622654-58622410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
473-719
               

               
Cow position:
               
chr4:6445695-6445441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
167, 54
               

               
Conread position:
               
478-698
               

               
Cow position:
               
chr4:19253671-19253878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-714
               

               
Cow position:
               
chr4:50976484-50976709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
478-715
               

               
Cow position:
               
chr4:68837113-68836881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
190, 55
               

               
Conread position:
               
478-719
               

               
Cow position:
               
chr4:11109184-11108952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
214, 55
               

               
Conread position:
               
484-690
               

               
Cow position:
               
chr4:17044394-17044195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
489-716
               

               
Cow position:
               
chr4:14794324-14794546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
175, 38
               
528-721UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr4:1240491-1240297 (view  custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 22
               
443-663UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr5:306445-306232 (view  custom track)

               
               
               
Alignm length:
221

               
               
               
Alignm identity:
158

               
               
               
Alignm E-value:
5e-31

               
               
               
Alignm gaps (pig, cow):
90, 0
450-719UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr5:55993486-55993223 (view  custom track)

               
               
               
Alignm length:
274

               
               
               
Alignm identity:
198

               
               
               
Alignm E-value:
1e-37

               
               
               
Alignm gaps (pig, cow):
106, 82

               
               
               Conread position:454-719
               
               
               Cow position:chr5:26077245-26076984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):211, 79

               
               
               Conread position:455-719
               
               
               Cow position:chr5:41955409-41955151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:456-719
               
               
               Cow position:chr5:73457124-73457387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 67

               
               
               Conread position:459-713
               
               
               Cow position:chr5:39393125-39392881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:459-719
               
               
               Cow position:chr5:4352598-4352843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:459-719
               
               
               Cow position:chr5:50605376-50605120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:469-679
               
               
               Cow position:chr5:57364593-57364386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):195, 55

               
               
               Conread position:469-710
               
               
               Cow position:chr5:27172666-27172897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:470-713
               
               
               Cow position:chr5:4964398-4964161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):198, 63

               
               
               Conread position:470-719
               
               
               Cow position:chr5:64780034-64779788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):194, 63

               
               
               Conread position:472-716
               
               
               Cow position:chr5:18120501-18120260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-716
               
               
               Cow position:chr5:40130618-40130377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-717
               
               
               Cow position:chr5:28024685-28024916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:472-719
               
               
               Cow position:chr5:5925989-5925745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:472-719
               
               
               Cow position:chr5:9056635-9056879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr5:13407571-13407815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr5:30567247-30567492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr5:50391132-50390888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr5:58197998-58198239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:477-719
               
               
               Cow position:chr5:12730733-12730494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):187, 56

               
               
               Conread position:477-719
               
               
               Cow position:chr5:48533920-48534159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):163, 42

               
               
               Conread position:478-696
               
               
               Cow position:chr5:62375909-62376121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:478-718
               
               
               Cow position:chr5:43989046-43989294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:484-719
               
               
               Cow position:chr5:23847132-23846901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:484-719
               
               
               Cow position:chr5:41979493-41979715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:488-712
               
               
               Cow position:chr5:46627269-46627054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:488-719
               
               
               Cow position:chr5:14544310-14544085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):206, 45

               
               
               Conread position:488-719
               
               
               Cow position:chr5:31121212-31120986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:493-719
               
               
               Cow position:chr5:7756275-7756504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 57

               
               
               Conread position:443-719
               
               
               Cow position:chr6:68029259-68029531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 64

               
               
               Conread position:450-719
               
               
               Cow position:chr6:28702607-28702351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):215, 83

               
               
               Conread position:450-719
               
               
               Cow position:chr6:62578093-62577828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:451-719
               
               
               Cow position:chr6:26777081-26776812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:452-716
               
               
               Cow position:chr6:2580522-2580774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):214, 81

               
               
               Conread position:453-719
               
               
               Cow position:chr6:67552576-67552839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 80

               
               
               Conread position:454-719
               
               
               Cow position:chr6:2376805-2377058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):240, 72

               
               
               Conread position:455-719
               
               
               Cow position:chr6:7192583-7192327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):207, 29

               
               
               Conread position:456-714
               
               
               Cow position:chr6:14081652-14081908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:456-719
               
               
               Cow position:chr6:65929337-65929598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):232, 77

               
               
               Conread position:457-718
               
               
               Cow position:chr6:6186340-6186598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:470-673
               
               
               Cow position:chr6:1535811-1536008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:471-719
               
               
               Cow position:chr6:25216414-25216657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:472-656
               
               
               Cow position:chr6:66388722-66388544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:472-660
               
               
               Cow position:chr6:31913733-31913915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:472-673
               
               
               Cow position:chr6:55785754-55785952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-692
               
               
               Cow position:chr6:2446092-2446309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-710
               
               
               Cow position:chr6:32632933-32633168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-710
               
               
               Cow position:chr6:33465085-33465315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:472-719
               
               
               Cow position:chr6:5750045-5750286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:11870817-11870573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:13757836-13758080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr6:13849188-13849432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:18513668-18513909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:20351979-20351735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:21890368-21890607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:28186723-28186479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:37386695-37386936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr6:45902775-45902531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):193, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr6:45936378-45936619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):193, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr6:46479242-46479486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr6:55237805-55238049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:478-655
               
               
               Cow position:chr6:10633639-10633805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:479-719
               
               
               Cow position:chr6:57471933-57472170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:481-714
               
               
               Cow position:chr6:41676060-41676288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:528-719
               
               
               Cow position:chr6:14133582-14133388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 22

               
               
               Conread position:443-719
               
               
               Cow position:chr7:33066530-33066263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:450-716
               
               
               Cow position:chr7:27100090-27099827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):105, 77

               
               
               Conread position:450-719
               
               
               Cow position:chr7:7276589-7276855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):215, 83

               
               
               Conread position:450-719
               
               
               Cow position:chr7:8337562-8337825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):214, 83

               
               
               Conread position:451-719
               
               
               Cow position:chr7:6665682-6665947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):214, 82

               
               
               Conread position:451-719
               
               
               Cow position:chr7:45169720-45169985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:454-719
               
               
               Cow position:chr7:64351916-64352178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:461-718
               
               
               Cow position:chr7:8142-8393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:461-719
               
               
               Cow position:chr7:44218279-44218531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:462-714
               
               
               Cow position:chr7:63948907-63948655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:470-719
               
               
               Cow position:chr7:24806282-24806041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):224, 63

               
               
               Conread position:472-678
               
               
               Cow position:chr7:35759050-35759248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:472-713
               
               
               Cow position:chr7:30301100-30300862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-716
               
               
               Cow position:chr7:64247393-64247155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:472-719
               
               
               Cow position:chr7:537636-537395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr7:950409-950656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr7:11461926-11461682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr7:20061681-20061921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):222, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr7:20151510-20151266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr7:20797244-20797005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr7:26927970-26927726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr7:68896849-68897091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:472-721
               
               
               Cow position:chr7:34817853-34818099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:478-712
               
               
               Cow position:chr7:26836639-26836862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:478-712
               
               
               Cow position:chr7:43280096-43280325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:478-718
               
               
               Cow position:chr7:47974096-47973862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:478-719
               
               
               Cow position:chr7:29472665-29472900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:484-643
               
               
               Cow position:chr7:30117006-30116854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:518-716
               
               
               Cow position:chr7:51839446-51839643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:534-718
               
               
               Cow position:chr7:468584-468398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 49

               
               
               Conread position:442-718
               
               
               Cow position:chr8:38575830-38575552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:443-719
               
               
               Cow position:chr8:47067436-47067163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:450-715
               
               
               Cow position:chr8:24191341-24191603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:450-719
               
               
               Cow position:chr8:1569489-1569753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):215, 83

               
               
               Conread position:451-719
               
               
               Cow position:chr8:32629651-32629375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):181, 82

               
               
               Conread position:453-693
               
               
               Cow position:chr8:46601465-46601702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):215, 71

               
               
               Conread position:453-714
               
               
               Cow position:chr8:11604603-11604860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:454-710
               
               
               Cow position:chr8:43665-43415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):210, 79

               
               
               Conread position:455-721
               
               
               Cow position:chr8:21251615-21251877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):210, 78

               
               
               Conread position:456-719
               
               
               Cow position:chr8:51700697-51700958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:468-716
               
               
               Cow position:chr8:36310705-36310468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:470-672
               
               
               Cow position:chr8:50682446-50682641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:470-716
               
               
               Cow position:chr8:59260558-59260310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:472-709
               
               
               Cow position:chr8:6749628-6749393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:472-709
               
               
               Cow position:chr8:51068456-51068690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-710
               
               
               Cow position:chr8:1151881-1151655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr8:1321414-1321649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:472-719
               
               
               Cow position:chr8:1501881-1501649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:472-719
               
               
               Cow position:chr8:14257475-14257719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr8:21042236-21041992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr8:26606058-26606288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:472-719
               
               
               Cow position:chr8:30156495-30156735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr8:32435455-32435215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):222, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr8:34405759-34405997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):202, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr8:35129408-35129164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr8:36786407-36786162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:477-710
               
               
               Cow position:chr8:32082259-32082032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:477-719
               
               
               Cow position:chr8:42153902-42153666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:478-701
               
               
               Cow position:chr8:11777057-11777277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):186, 49

               
               
               Conread position:478-719
               
               
               Cow position:chr8:26393433-26393205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:478-719
               
               
               Cow position:chr8:47888247-47888484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:528-718
               
               
               Cow position:chr8:18210013-18209827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:528-719
               
               
               Cow position:chr8:54268189-54268383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:450-714
               
               
               Cow position:chr9:2872369-2872630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):214, 83

               
               
               Conread position:450-719
               
               
               Cow position:chr9:28679993-28680259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):214, 83

               
               
               Conread position:450-719
               
               
               Cow position:chr9:64013203-64012937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):215, 57

               
               
               Conread position:455-719
               
               
               Cow position:chr9:5535193-5534934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):100, 71

               
               
               Conread position:456-719
               
               
               Cow position:chr9:52293395-52293660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 73

               
               
               Conread position:461-721
               
               
               Cow position:chr9:49302203-49301943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:470-690
               
               
               Cow position:chr9:19077710-19077925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):65, 83

               
               
               Conread position:472-669
               
               
               Cow position:chr9:6300626-6300819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr9:1249955-1249710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):174, 61

               
               
               Conread position:472-719
               
               
               Cow position:chr9:6884371-6884613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr9:17313544-17313788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):192, 55

               
               
               Conread position:472-719
               
               
               Cow position:chr9:38678175-38678419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:477-719
               
               
               Cow position:chr9:35594038-35593796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:478-691
               
               
               Cow position:chr9:3961577-3961370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):186, 53

               
               
               Conread position:478-717
               
               
               Cow position:chr9:4307304-4307066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:479-717
               
               
               Cow position:chr9:37066915-37067146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:479-719
               
               
               Cow position:chr9:50774900-50775128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:481-719
               
               
               Cow position:chr9:31091234-31091469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):183, 52

               
               
               Conread position:484-718
               
               
               Cow position:chr9:29333665-29333897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:528-714
               
               
               Cow position:chr9:20175612-20175431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:528-717
               
               
               Cow position:chr9:9515159-9515345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 22

               
               
               Conread position:534-717
               
               
               Cow position:chr9:23420710-23420884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:442-719
               
               
               Cow position:chrX:20799220-20799494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 84

               
               
               Conread position:443-719
               
               
               Cow position:chrX:16036511-16036241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):224, 45

               
               
               Conread position:446-719
               
               
               Cow position:chrX:11458879-11458608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):218, 73

               
               
               Conread position:450-702
               
               
               Cow position:chrX:24323624-24323374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:450-710
               
               
               Cow position:chrX:16361177-16360920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):105, 77

               
               
               Conread position:450-716
               
               
               Cow position:chrX:31727412-31727665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):244, 77

               
               
               Conread position:450-719
               
               
               Cow position:chrX:12652562-12652299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:450-719
               
               
               Cow position:chrX:21792560-21792817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:450-719
               
               
               Cow position:chrX:23021243-23021509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):214, 83

               
               
               Conread position:450-719
               
               
               Cow position:chrX:24446282-24446016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):215, 83

               
               
               Conread position:450-719
               
               
               Cow position:chrX:27984659-27984398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):218, 83

               
               
               Conread position:451-719
               
               
               Cow position:chrX:14596786-14597048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):213, 82

               
               
               Conread position:451-719
               
               
               Cow position:chrX:22565758-22565493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:451-719
               
               
               Cow position:chrX:27424356-27424091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):213, 82

               
               
               Conread position:452-714
               
               
               Cow position:chrX:7032395-7032655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:452-716
               
               
               Cow position:chrX:6871152-6870891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):210, 81

               
               
               Conread position:452-719
               
               
               Cow position:chrX:12358818-12359082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):213, 81

               
               
               Conread position:452-719
               
               
               Cow position:chrX:17476478-17476214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):212, 81

               
               
               Conread position:453-719
               
               
               Cow position:chrX:10529850-10529595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):212, 80

               
               
               Conread position:454-719
               
               
               Cow position:chrX:1941419-1941166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:454-721
               
               
               Cow position:chrX:43791223-43790959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 63

               
               
               Conread position:455-710
               
               
               Cow position:chrX:31979915-31979663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):209, 78

               
               
               Conread position:455-719
               
               
               Cow position:chrX:7095433-7095691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):210, 78

               
               
               Conread position:456-719
               
               
               Cow position:chrX:28608156-28607900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):207, 79

               
               
               Conread position:457-719
               
               
               Cow position:chrX:5678388-5678131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:457-719
               
               
               Cow position:chrX:28505327-28505068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:457-719
               
               
               Cow position:chrX:35283229-35283499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):209, 80

               
               
               Conread position:458-719
               
               
               Cow position:chrX:2010681-2010426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):209, 77

               
               
               Conread position:469-719
               
               
               Cow position:chrX:20358055-20357808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):196, 64

               
               
               Conread position:470-678
               
               
               Cow position:chrX:9066633-9066834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:470-686
               
               
               Cow position:chrX:21581438-21581651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):198, 63

               
               
               Conread position:470-707
               
               
               Cow position:chrX:8513242-8513471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:470-710
               
               
               Cow position:chrX:16781235-16781476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):198, 63

               
               
               Conread position:470-719
               
               
               Cow position:chrX:14783528-14783285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):198, 63

               
               
               Conread position:471-714
               
               
               Cow position:chrX:24110621-24110382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:472-644
               
               
               Cow position:chrX:28550470-28550636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:472-651
               
               
               Cow position:chrX:16683881-16683708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:472-694
               
               
               Cow position:chrX:2578374-2578593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:472-713
               
               
               Cow position:chrX:28520648-28520410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:2814529-2814285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:3359779-3360022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:3373970-3373726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:3419270-3419026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):89, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:11147379-11147147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:15261661-15261425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:472-719
               
               
               Cow position:chrX:15622542-15622298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:472-719
               
               
               Cow position:chrX:18657853-18657609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:19397725-19397968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:24411981-24412220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:24730598-24730842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):196, 55

               
               
               Conread position:472-719
               
               
               Cow position:chrX:29095367-29095123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:32065214-32064970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:472-719
               
               
               Cow position:chrX:34093879-34093635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:472-719
               
               
               Cow position:chrX:39561983-39561739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:475-719
               
               
               Cow position:chrX:31511559-31511805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):80, 52

               
               
               Conread position:477-716
               
               
               Cow position:chrX:28556346-28556580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:478-714
               
               
               Cow position:chrX:13180596-13180372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:478-716
               
               
               Cow position:chrX:6248217-6247989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):215, 51

               
               
               Conread position:478-718
               
               
               Cow position:chrX:28867286-28867051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:478-718
               
               
               Cow position:chrX:41887040-41886809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:478-719
               
               
               Cow position:chrX:32328169-32328402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:483-718
               
               
               Cow position:chrX:47395044-47394811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):163, 50

               
               
               Conread position:484-719
               
               
               Cow position:chrX:2381473-2381694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:484-719
               
               
               Cow position:chrX:36838679-36838914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):184, 43

               
               
               Conread position:488-710
               
               
               Cow position:chrX:23133575-23133788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:515-719
               
               
               Cow position:chrX:30071878-30072085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):152, 16