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Cow genome map

           
Conread name:
           
LyN1-MLN01D110092
        

               
Conread position:
               
21-578
               

               
Cow position:
               
chr10:4499983-4500551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
35-263
               

               
Cow position:
               
chr10:6556567-6556799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr10:37127761-37127111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 198
               

               
Conread position:
               
40-484
               

               
Cow position:
               
chr10:24784102-24783655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
78-629
               

               
Cow position:
               
chr10:20936780-20936210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
111-636
               

               
Cow position:
               
chr10:24100969-24100438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr11:26123265-26122623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr11:38833812-38833174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 263
               

               
Conread position:
               
27-271
               

               
Cow position:
               
chr11:51042991-51043243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 167
               

               
Conread position:
               
27-635
               

               
Cow position:
               
chr11:46722579-46721979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
41-280
               

               
Cow position:
               
chr11:4885307-4885054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 239
               

               
Conread position:
               
46-271
               

               
Cow position:
               
chr11:74948610-74948372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
46-630
               

               
Cow position:
               
chr11:9762097-9761487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
84-579
               

               
Cow position:
               
chr11:55270823-55270306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
87, 269
               

               
Conread position:
               
85-636
               

               
Cow position:
               
chr11:26069321-26068763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
86-640
               

               
Cow position:
               
chr11:84965835-84966415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 140
               

               
Conread position:
               
90-395
               

               
Cow position:
               
chr11:23221453-23221144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
97-616
               

               
Cow position:
               
chr11:21010661-21010129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
6-493
               

               
Cow position:
               
chr12:29716268-29715763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
21-486
               

               
Cow position:
               
chr12:30685681-30686166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
21-643
               

               
Cow position:
               
chr12:3179312-3179961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
27-637
               

               
Cow position:
               
chr12:27514609-27515244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
27-675
               

               
Cow position:
               
chr12:8554802-8555485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 221
               

               
Conread position:
               
21-431
               

               
Cow position:
               
chr13:12566730-12566311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
21-631
               

               
Cow position:
               
chr13:34510080-34509445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr13:34096226-34095977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
15, 223
               

               
Conread position:
               
27-480
               

               
Cow position:
               
chr13:47575828-47576301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
28-637
               

               
Cow position:
               
chr13:28343382-28342755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
41-457
               

               
Cow position:
               
chr13:11796960-11796534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
52-272
               

               
Cow position:
               
chr13:21830303-21830526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 156
               

               
Conread position:
               
54-631
               

               
Cow position:
               
chr13:17050475-17049866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
23, 289
               

               
Conread position:
               
105-480
               

               
Cow position:
               
chr13:19565537-19565921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
328-636
               

               
Cow position:
               
chr13:41276853-41277183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
21-395
               

               
Cow position:
               
chr14:37454229-37453844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 156
               

               
Conread position:
               
72-393
               

               
Cow position:
               
chr14:18197244-18197580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 134
               

               
Conread position:
               
76-637
               

               
Cow position:
               
chr14:35931035-35931611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
85-636
               

               
Cow position:
               
chr14:13580507-13581076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
86-484
               

               
Cow position:
               
chr14:13826129-13825718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
95-483
               

               
Cow position:
               
chr14:12802899-12802505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
96-645
               

               
Cow position:
               
chr14:17768482-17767926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 141
               

               
Conread position:
               
19-228
               

               
Cow position:
               
chr15:20849630-20849410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
27-640
               

               
Cow position:
               
chr15:9342906-9343529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
27-640
               

               
Cow position:
               
chr15:48008004-48008667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 150
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr15:21804630-21805238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
45-493
               

               
Cow position:
               
chr15:20414884-20415330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
86-636
               

               
Cow position:
               
chr15:40647734-40647188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
86-637
               

               
Cow position:
               
chr15:35737464-35738027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 370
               

               
Conread position:
               
6-620
               

               
Cow position:
               
chr16:30072640-30073275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr16:25086868-25087510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
29-430
               

               
Cow position:
               
chr16:44866194-44865786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
34-480
               

               
Cow position:
               
chr16:20192903-20192440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr16:28169049-28168415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
41-269
               

               
Cow position:
               
chr16:28374706-28374471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 204
               

               
Conread position:
               
41-546
               

               
Cow position:
               
chr16:45232652-45233174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 170
               

               
Conread position:
               
46-621
               

               
Cow position:
               
chr16:30697435-30696831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
31, 191
               

               
Conread position:
               
48-484
               

               
Cow position:
               
chr16:52474708-52474253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 293
               

               
Conread position:
               
80-493
               

               
Cow position:
               
chr16:39231808-39232229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
135-637
               

               
Cow position:
               
chr16:3331293-3331810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
21-621
               

               
Cow position:
               
chr17:9230725-9230093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 230
               

               
Conread position:
               
32-596
               

               
Cow position:
               
chr17:1786167-1785584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
35-637
               

               
Cow position:
               
chr17:15437631-15438263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 204
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr17:29826132-29825500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
41-637
               

               
Cow position:
               
chr17:21419787-21420414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr17:19477544-19477214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
28-640
               

               
Cow position:
               
chr18:14422316-14422959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr18:22183470-22182842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
96-628
               

               
Cow position:
               
chr18:20692060-20691516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
331-640
               

               
Cow position:
               
chr18:44023850-44024176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
335-613
               

               
Cow position:
               
chr18:17960599-17960319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
178, 75
               

               
Conread position:
               
27-280
               

               
Cow position:
               
chr19:29142117-29142377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 248
               

               
Conread position:
               
32-640
               

               
Cow position:
               
chr19:7481882-7481244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 310
               

               
Conread position:
               
41-496
               

               
Cow position:
               
chr19:13460001-13459519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 112
               

               
Conread position:
               
44-518
               

               
Cow position:
               
chr19:16129436-16129920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 288
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr19:29629640-29629452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 149
               

               
Conread position:
               
291-611
               

               
Cow position:
               
chr19:32498417-32498084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
15-616
               

               
Cow position:
               
chr2:26069510-26068902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
24, 120
               

               
Conread position:
               
21-625
               

               
Cow position:
               
chr2:41052237-41051604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
41-640
               

               
Cow position:
               
chr2:44058517-44057897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
111-637
               

               
Cow position:
               
chr2:13068413-13067871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
135-637
               

               
Cow position:
               
chr2:24471032-24470501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
178-637
               

               
Cow position:
               
chr2:54728427-54727947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
206-655
               

               
Cow position:
               
chr2:84756202-84756673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr20:22697018-22696395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 312
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr20:30577907-30578542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 195
               

               
Conread position:
               
82-637
               

               
Cow position:
               
chr20:20752767-20752194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 79
               

               
Conread position:
               
139-554
               

               
Cow position:
               
chr20:13500434-13500859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
155-640
               

               
Cow position:
               
chr20:24541568-24542080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr21:32397922-32397284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
93-276
               

               
Cow position:
               
chr21:1076229-1076414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
19-555
               

               
Cow position:
               
chr22:36128352-36127794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 311
               

               
Conread position:
               
21-640
               

               
Cow position:
               
chr22:36356019-36356664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
15, 290
               

               
Conread position:
               
36-636
               

               
Cow position:
               
chr22:11803092-11802468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
38, 193
               

               
Conread position:
               
90-628
               

               
Cow position:
               
chr22:42492304-42491773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
105-422
               

               
Cow position:
               
chr22:8689219-8689549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 203
               

               
Conread position:
               
116-393
               

               
Cow position:
               
chr22:44417083-44416801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
80, 218
               

               
Conread position:
               
25-385
               

               
Cow position:
               
chr23:10717639-10717271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
165-493
               

               
Cow position:
               
chr23:16055850-16056179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 173
               

               
Conread position:
               
165-640
               

               
Cow position:
               
chr23:28220790-28221294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 179
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chr24:33029204-33029626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
21-631
               

               
Cow position:
               
chr24:18867919-18867286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
53, 194
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr24:29189320-29189962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
53-277
               

               
Cow position:
               
chr24:16856344-16856571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
86-629
               

               
Cow position:
               
chr24:22321833-22322384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
85, 146
               

               
Conread position:
               
86-640
               

               
Cow position:
               
chr24:16082392-16081809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
105-366
               

               
Cow position:
               
chr24:13086358-13086096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
168-480
               

               
Cow position:
               
chr24:19468417-19468081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
289-607
               

               
Cow position:
               
chr24:16857207-16857538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
29-602
               

               
Cow position:
               
chr26:26998377-26997802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
43-270
               

               
Cow position:
               
chr26:19489135-19489365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
82-277
               

               
Cow position:
               
chr26:9106298-9106097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
23-637
               

               
Cow position:
               
chr27:9331690-9332329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
41-271
               

               
Cow position:
               
chr27:23656781-23657007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
86-395
               

               
Cow position:
               
chr27:15274068-15273749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
90, 256
               

               
Conread position:
               
5-640
               

               
Cow position:
               
chr28:32825100-32824467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr28:29760642-29759999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
33-264
               

               
Cow position:
               
chr28:33383929-33383692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 191
               

               
Conread position:
               
34-616
               

               
Cow position:
               
chr28:27241649-27241037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
80-394
               

               
Cow position:
               
chr28:18183651-18183329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 211
               

               
Conread position:
               
90-273
               

               
Cow position:
               
chr28:19905987-19906169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
172-637
               

               
Cow position:
               
chr28:21568043-21568535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
21-510
               

               
Cow position:
               
chr29:9640825-9640313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
35-480
               

               
Cow position:
               
chr29:19621296-19620834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
51-637
               

               
Cow position:
               
chr29:10844940-10845556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
286-640
               

               
Cow position:
               
chr29:4518137-4518501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
107, 36
               

               
Conread position:
               
21-480
               

               
Cow position:
               
chr3:15053844-15053366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
27-556
               

               
Cow position:
               
chr3:14798291-14798847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
29-639
               

               
Cow position:
               
chr3:18760518-18759905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
32-389
               

               
Cow position:
               
chr3:58897338-58897700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
34-593
               

               
Cow position:
               
chr3:13724835-13724254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
35-480
               

               
Cow position:
               
chr3:36862570-36862108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 266
               

               
Conread position:
               
35-637
               

               
Cow position:
               
chr3:31122265-31121631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 224
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr3:29575234-29574604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 175
               

               
Conread position:
               
35-673
               

               
Cow position:
               
chr3:19940811-19941464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
43-637
               

               
Cow position:
               
chr3:63256007-63256625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
43-640
               

               
Cow position:
               
chr3:68718826-68718190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 192
               

               
Conread position:
               
76-281
               

               
Cow position:
               
chr3:66740907-66740698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
93-393
               

               
Cow position:
               
chr3:71206360-71206668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
96-602
               

               
Cow position:
               
chr3:25999201-25998673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 162
               

               
Conread position:
               
96-631
               

               
Cow position:
               
chr3:67532118-67532666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
75, 95
               

               
Conread position:
               
104-493
               

               
Cow position:
               
chr3:21103498-21103103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
134-477
               

               
Cow position:
               
chr3:29641411-29641758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
165-504
               

               
Cow position:
               
chr3:55729061-55729417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 171
               

               
Conread position:
               
172-632
               

               
Cow position:
               
chr3:54358707-54358237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 158
               

               
Conread position:
               
195-612
               

               
Cow position:
               
chr3:73530751-73531180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
205-628
               

               
Cow position:
               
chr3:40209414-40208972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
21-446
               

               
Cow position:
               
chr4:32393904-32394338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
34-432
               

               
Cow position:
               
chr4:67353003-67353405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 246
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr4:68942892-68942675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 176
               

               
Conread position:
               
35-277
               

               
Cow position:
               
chr4:59957681-59957434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 164
               

               
Conread position:
               
35-536
               

               
Cow position:
               
chr4:27874660-27874131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
35-637
               

               
Cow position:
               
chr4:41960590-41961216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr4:41956454-41957084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 300
               

               
Conread position:
               
41-309
               

               
Cow position:
               
chr4:25347930-25348205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr4:29032728-29033165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 250
               

               
Conread position:
               
86-602
               

               
Cow position:
               
chr4:20890450-20889909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
105-480
               

               
Cow position:
               
chr4:25877175-25877560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
105-640
               

               
Cow position:
               
chr4:9798479-9797920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 238
               

               
Conread position:
               
165-629
               

               
Cow position:
               
chr4:54275961-54275480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
22-277
               

               
Cow position:
               
chr5:70099556-70099815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
27-484
               

               
Cow position:
               
chr5:18886774-18886301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 173
               

               
Conread position:
               
28-385
               

               
Cow position:
               
chr5:57266731-57267078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr5:5926175-5925539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
86-640
               

               
Cow position:
               
chr5:3966281-3966858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr6:19104983-19104349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 195
               

               
Conread position:
               
43-601
               

               
Cow position:
               
chr6:13849008-13849590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
106-476
               

               
Cow position:
               
chr6:7058647-7058273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 169
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chr7:38398822-38399398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
29-270
               

               
Cow position:
               
chr7:45652627-45652869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 167
               

               
Conread position:
               
34-271
               

               
Cow position:
               
chr7:67026187-67025947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 175
               

               
Conread position:
               
35-637
               

               
Cow position:
               
chr7:26928158-26927522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
21-320
               

               
Cow position:
               
chr8:45689603-45689298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
21-436
               

               
Cow position:
               
chr8:18510116-18510534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
21-494
               

               
Cow position:
               
chr8:48801984-48801499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
21-637
               

               
Cow position:
               
chr8:42486097-42486742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
21-640
               

               
Cow position:
               
chr8:43180809-43180189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 209
               

               
Conread position:
               
26-380
               

               
Cow position:
               
chr8:22322816-22323162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chr8:55272324-55271692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
36-447
               

               
Cow position:
               
chr8:53837149-53837580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 303
               

               
Conread position:
               
73-388
               

               
Cow position:
               
chr8:33091998-33092309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
82-272
               

               
Cow position:
               
chr8:42476185-42476375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
113, 166
               

               
Conread position:
               
86-649
               

               
Cow position:
               
chr8:47675098-47675690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 247
               

               
Conread position:
               
21-263
               

               
Cow position:
               
chr9:46273220-46273471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
21-635
               

               
Cow position:
               
chr9:7060226-7059578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
33-274
               

               
Cow position:
               
chr9:19293157-19293401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
14-278
               

               
Cow position:
               
chrX:3627026-3627305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
21-283
               

               
Cow position:
               
chrX:20873305-20873035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 256
               

               
Conread position:
               
21-530
               

               
Cow position:
               
chrX:27388515-27388002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
21-640
               

               
Cow position:
               
chrX:36547020-36546378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 191
               

               
Conread position:
               
27-432
               

               
Cow position:
               
chrX:23328052-23327637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
28-661
               

               
Cow position:
               
chrX:43073512-43074156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 182
               

               
Conread position:
               
29-360
               

               
Cow position:
               
chrX:13914175-13914506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 164
               

               
Conread position:
               
33-557
               

               
Cow position:
               
chrX:21731020-21730498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 119
               

               
Conread position:
               
33-600
               

               
Cow position:
               
chrX:23848567-23849163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chrX:2273072-2273700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
35-640
               

               
Cow position:
               
chrX:9010103-9010731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
41-633
               

               
Cow position:
               
chrX:23384770-23384156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
33, 306
               

               
Conread position:
               
42-269
               

               
Cow position:
               
chrX:30728178-30727958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
72-432
               

               
Cow position:
               
chrX:11449972-11449602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 119