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Cow genome map

           
Conread name:
           
LyN1-MLN01E060034
        

               
Conread position:
               
1-416
               

               
Cow position:
               
chr10:8365510-8365909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
196, 40
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr10:28528196-28528593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr10:45309987-45310390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
249, 91
               

               
Conread position:
               
15-401
               

               
Cow position:
               
chr10:61294189-61294569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
183, 50
               

               
Conread position:
               
15-411
               

               
Cow position:
               
chr10:39077697-39077312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
447-799
               

               
Cow position:
               
chr10:40388384-40388746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
452-805
               

               
Cow position:
               
chr10:7856175-7855821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
468-731
               

               
Cow position:
               
chr10:38866763-38867023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
468-804
               

               
Cow position:
               
chr10:49931424-49931075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
471-805
               

               
Cow position:
               
chr10:23543240-23542900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr11:34456843-34456658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr11:8820071-8819679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr11:15942452-15942700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
12-379
               

               
Cow position:
               
chr11:54279878-54280240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 93
               

               
Conread position:
               
24-365
               

               
Cow position:
               
chr11:52936649-52936315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
113-399
               

               
Cow position:
               
chr11:42309709-42309993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 126
               

               
Conread position:
               
123-411
               

               
Cow position:
               
chr11:5280788-5280497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr11:15652874-15652596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
414-805
               

               
Cow position:
               
chr11:64478014-64477614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
446-691
               

               
Cow position:
               
chr11:68423939-68424180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
453-805
               

               
Cow position:
               
chr11:76603108-76603476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr13:14183012-14183396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chr13:4934435-4934078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 90
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chr13:4856022-4855622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr13:34089266-34088854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
210, 118
               

               
Conread position:
               
7-434
               

               
Cow position:
               
chr13:41903437-41903864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
73, 105
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr13:52279758-52279351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
38-416
               

               
Cow position:
               
chr13:48549053-48548677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
414-799
               

               
Cow position:
               
chr13:571060-571466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
443-772
               

               
Cow position:
               
chr13:5165861-5166196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr14:7844593-7844197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
6-391
               

               
Cow position:
               
chr14:20912688-20912312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
217, 74
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr14:15272456-15272854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
22-411
               

               
Cow position:
               
chr14:39321630-39321250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
28-411
               

               
Cow position:
               
chr14:32449753-32449377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
187, 52
               

               
Conread position:
               
414-708
               

               
Cow position:
               
chr14:25316639-25316354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
22-389
               

               
Cow position:
               
chr15:49448362-49448720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 104
               

               
Conread position:
               
23-416
               

               
Cow position:
               
chr15:23215951-23216326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
91-415
               

               
Cow position:
               
chr15:9438334-9438018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
120-410
               

               
Cow position:
               
chr15:23274874-23275163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
414-799
               

               
Cow position:
               
chr15:3913410-3913799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
414-799
               

               
Cow position:
               
chr15:48287946-48288352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
433-805
               

               
Cow position:
               
chr15:7584213-7583838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
446-797
               

               
Cow position:
               
chr15:21808802-21809144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
577-799
               

               
Cow position:
               
chr15:22238867-22238637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 221
               

               
Conread position:
               
16-413
               

               
Cow position:
               
chr16:45816663-45817051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
178, 64
               

               
Conread position:
               
79-416
               

               
Cow position:
               
chr16:2229753-2229431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
449-799
               

               
Cow position:
               
chr16:52391030-52391391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 123
               

               
Conread position:
               
452-805
               

               
Cow position:
               
chr16:20124690-20125050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr17:3328157-3327749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 91
               

               
Conread position:
               
10-347
               

               
Cow position:
               
chr17:11775224-11775540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
149, 98
               

               
Conread position:
               
413-708
               

               
Cow position:
               
chr17:3605128-3604833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr18:48529361-48529012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
152, 73
               

               
Conread position:
               
122-411
               

               
Cow position:
               
chr18:16871409-16871120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
420-702
               

               
Cow position:
               
chr18:17399432-17399150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
420-799
               

               
Cow position:
               
chr18:25835740-25836119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
452-799
               

               
Cow position:
               
chr18:22482253-22482595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
486-707
               

               
Cow position:
               
chr18:37398614-37398830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
112, 38
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr19:36998972-36999189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
196, 78
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr19:42466249-42465843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 110
               

               
Conread position:
               
7-410
               

               
Cow position:
               
chr19:15871388-15871785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
7-416
               

               
Cow position:
               
chr19:30430789-30430371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 235
               

               
Conread position:
               
31-415
               

               
Cow position:
               
chr19:30561379-30560997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
163, 53
               

               
Conread position:
               
443-789
               

               
Cow position:
               
chr19:37797534-37797197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
449-802
               

               
Cow position:
               
chr19:47560208-47559847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
452-710
               

               
Cow position:
               
chr19:45146355-45146612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
453-797
               

               
Cow position:
               
chr19:30456171-30456513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
485-710
               

               
Cow position:
               
chr19:22860223-22859995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr2:43812046-43811700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
6-399
               

               
Cow position:
               
chr2:39116487-39116106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr2:834400-834007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
192, 105
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr2:15963980-15964379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 74
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr2:19014050-19013654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
209, 73
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chr2:26080216-26079813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
66, 114
               

               
Conread position:
               
28-411
               

               
Cow position:
               
chr2:28646953-28647327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
170, 52
               

               
Conread position:
               
113-409
               

               
Cow position:
               
chr2:33584205-33584500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
142-416
               

               
Cow position:
               
chr2:5284950-5285223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 66
               

               
Conread position:
               
414-799
               

               
Cow position:
               
chr2:62667947-62668344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
416-805
               

               
Cow position:
               
chr2:14405476-14405882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
423-707
               

               
Cow position:
               
chr2:39642318-39642600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
453-709
               

               
Cow position:
               
chr2:26714629-26714379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
454-804
               

               
Cow position:
               
chr2:33182992-33183355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
573-799
               

               
Cow position:
               
chr2:16424449-16424677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr20:28560671-28561068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
190, 47
               

               
Conread position:
               
448-801
               

               
Cow position:
               
chr20:8479324-8479675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
452-707
               

               
Cow position:
               
chr20:30188346-30188596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
6-388
               

               
Cow position:
               
chr21:30161887-30162259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
6-409
               

               
Cow position:
               
chr21:35389827-35390216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
188, 74
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr21:12099856-12099486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
30-415
               

               
Cow position:
               
chr21:22750154-22750528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
120-390
               

               
Cow position:
               
chr21:24083142-24083409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
283-409
               

               
Cow position:
               
chr21:14984753-14984878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
414-805
               

               
Cow position:
               
chr21:10093429-10093835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
450-804
               

               
Cow position:
               
chr21:20533800-20533436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
28, 113
               

               
Conread position:
               
6-398
               

               
Cow position:
               
chr22:36852685-36853068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
65, 110
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr22:3433812-3434211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
190, 74
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr22:28785270-28784873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
398-708
               

               
Cow position:
               
chr22:9982936-9982625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
416-804
               

               
Cow position:
               
chr22:11659404-11659016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 109
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr23:30634450-30634849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
190, 74
               

               
Conread position:
               
113-415
               

               
Cow position:
               
chr23:31613025-31612722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 82
               

               
Conread position:
               
381-804
               

               
Cow position:
               
chr23:17065206-17064774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
443-797
               

               
Cow position:
               
chr23:8087307-8087682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
467-805
               

               
Cow position:
               
chr23:16280930-16280597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr24:39055452-39055871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 110
               

               
Conread position:
               
6-396
               

               
Cow position:
               
chr24:5774896-5775278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
200, 105
               

               
Conread position:
               
453-805
               

               
Cow position:
               
chr24:23810114-23809756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
6-414
               

               
Cow position:
               
chr25:41408543-41408147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
286-411
               

               
Cow position:
               
chr25:13965709-13965584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
420-710
               

               
Cow position:
               
chr25:8015409-8015704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr26:17393705-17394100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
166, 74
               

               
Conread position:
               
32-411
               

               
Cow position:
               
chr26:30586181-30586555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
183, 48
               

               
Conread position:
               
414-709
               

               
Cow position:
               
chr26:12647202-12647495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
452-711
               

               
Cow position:
               
chr26:7022322-7022571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr27:17568246-17567847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
210, 49
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr27:4982517-4982118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
16-411
               

               
Cow position:
               
chr27:9255007-9255388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
237, 92
               

               
Conread position:
               
113-408
               

               
Cow position:
               
chr27:1904538-1904821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
159, 21
               

               
Conread position:
               
414-567
               

               
Cow position:
               
chr27:29021942-29021784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
416-708
               

               
Cow position:
               
chr27:12164562-12164275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
416-805
               

               
Cow position:
               
chr27:22586274-22586689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 124
               

               
Conread position:
               
447-705
               

               
Cow position:
               
chr27:27731654-27731397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
8-415
               

               
Cow position:
               
chr28:17249394-17249795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
17-411
               

               
Cow position:
               
chr28:13880700-13880315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
111-356
               

               
Cow position:
               
chr28:27030223-27030464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
147-415
               

               
Cow position:
               
chr28:12700705-12700436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
420-566
               

               
Cow position:
               
chr28:12683713-12683860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
420-796
               

               
Cow position:
               
chr28:12694231-12694610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
433-799
               

               
Cow position:
               
chr28:27804298-27804688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 154
               

               
Conread position:
               
470-796
               

               
Cow position:
               
chr28:20542593-20542931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr29:5635504-5635296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
9-411
               

               
Cow position:
               
chr29:19617622-19618004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
189, 71
               

               
Conread position:
               
294-586
               

               
Cow position:
               
chr29:5635276-5634979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr3:19108639-19108243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
198, 15
               

               
Conread position:
               
6-399
               

               
Cow position:
               
chr3:66043848-66044233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr3:43190194-43190593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr3:61554604-61555008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
22-393
               

               
Cow position:
               
chr3:77745204-77744838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
41-416
               

               
Cow position:
               
chr3:78905477-78905837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
204, 37
               

               
Conread position:
               
128-415
               

               
Cow position:
               
chr3:8452609-8452897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 112
               

               
Conread position:
               
411-805
               

               
Cow position:
               
chr3:51945899-51945509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
416-798
               

               
Cow position:
               
chr3:76139842-76139452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
420-777
               

               
Cow position:
               
chr3:71235546-71235193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
452-795
               

               
Cow position:
               
chr3:55324141-55323790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
28-415
               

               
Cow position:
               
chr4:1935669-1936046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
80-415
               

               
Cow position:
               
chr4:20789372-20789045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
176, 15
               

               
Conread position:
               
113-415
               

               
Cow position:
               
chr4:55540066-55540365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 126
               

               
Conread position:
               
414-798
               

               
Cow position:
               
chr4:35039585-35039190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 89
               

               
Conread position:
               
414-805
               

               
Cow position:
               
chr4:1309338-1309742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
446-799
               

               
Cow position:
               
chr4:25305235-25305582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
447-710
               

               
Cow position:
               
chr4:40650462-40650198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
447-799
               

               
Cow position:
               
chr4:44046741-44047105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
452-805
               

               
Cow position:
               
chr4:34020725-34021085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr5:2917445-2917048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr5:59771028-59770630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
107-396
               

               
Cow position:
               
chr5:39862689-39862398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
113-415
               

               
Cow position:
               
chr5:11287608-11287917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 193
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr5:20777831-20778112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
412-705
               

               
Cow position:
               
chr5:69753339-69753043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
480-710
               

               
Cow position:
               
chr5:74645696-74645466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
6-404
               

               
Cow position:
               
chr6:32418632-32418240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr6:34504401-34504801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
194, 74
               

               
Conread position:
               
113-407
               

               
Cow position:
               
chr6:37386171-37385878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chr6:67267272-67266991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 133
               

               
Conread position:
               
414-584
               

               
Cow position:
               
chr6:53133545-53133367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 112
               

               
Conread position:
               
414-805
               

               
Cow position:
               
chr6:15154523-15154914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
424-710
               

               
Cow position:
               
chr6:25607670-25607952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
449-795
               

               
Cow position:
               
chr6:2411948-2412295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
449-806
               

               
Cow position:
               
chr6:54140150-54139787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
455-712
               

               
Cow position:
               
chr6:10191753-10192003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr7:30043199-30042983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr7:38400062-38399665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr7:47190531-47190928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
8-410
               

               
Cow position:
               
chr7:44524019-44524413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
248, 66
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr7:19272362-19272744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 84
               

               
Conread position:
               
22-411
               

               
Cow position:
               
chr7:20829220-20828838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
28-415
               

               
Cow position:
               
chr7:1009844-1010215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
415-806
               

               
Cow position:
               
chr7:9190274-9190666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
416-656
               

               
Cow position:
               
chr7:26378614-26378851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
443-707
               

               
Cow position:
               
chr7:21227344-21227087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
449-710
               

               
Cow position:
               
chr7:55964939-55965193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
482-806
               

               
Cow position:
               
chr7:25016007-25015675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
482-806
               

               
Cow position:
               
chr7:25024714-25024382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr8:41950577-41950186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chr8:27561760-27562156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 109
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chr8:31222485-31222082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 74
               

               
Conread position:
               
28-416
               

               
Cow position:
               
chr8:37267898-37267520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
129-415
               

               
Cow position:
               
chr8:19823291-19823570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 69
               

               
Conread position:
               
414-805
               

               
Cow position:
               
chr8:6377200-6376791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
486-709
               

               
Cow position:
               
chr8:46778309-46778526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
6-409
               

               
Cow position:
               
chr9:10857069-10856672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
190, 74
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chr9:56166374-56166766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
414-763
               

               
Cow position:
               
chr9:18855792-18855433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
414-805
               

               
Cow position:
               
chr9:40131250-40131635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
630-805
               

               
Cow position:
               
chr9:18326488-18326309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:18289123-18289533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chrX:17610494-17610890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
215, 77
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chrX:23279984-23279585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chrX:164865-164461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chrX:13654451-13654054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
8-416
               

               
Cow position:
               
chrX:39765513-39765116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
83, 72
               

               
Conread position:
               
10-377
               

               
Cow position:
               
chrX:39387513-39387875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
16-416
               

               
Cow position:
               
chrX:28667005-28667396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 108
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chrX:24032036-24032352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
111-411
               

               
Cow position:
               
chrX:30317025-30316734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
416-798
               

               
Cow position:
               
chrX:6194063-6193664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
451-799
               

               
Cow position:
               
chrX:34115550-34115195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
452-795
               

               
Cow position:
               
chrX:41114503-41114855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
476-805
               

               
Cow position:
               
chrX:18152933-18152590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 89