Non-Coding RNA Search

Cow genome map


           Conread name:
           LyN1-MLN01E070058
        

               Conread position:
               145-437
               

               Cow position:
               chr1:23041799-23041513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               170, 5
               

               Conread position:
               179-411
               

               Cow position:
               chr1:75383186-75382953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               22, 111
               

               Conread position:
               184-451
               

               Cow position:
               chr1:60281566-60281306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               103, 33
               

               Conread position:
               186-456
               

               Cow position:
               chr1:23100097-23099830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 83
               

               Conread position:
               189-451
               

               Cow position:
               chr1:41182048-41181781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               74, 221
               

               Conread position:
               189-451
               

               Cow position:
               chr1:71136343-71136085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               230, 43
               

               Conread position:
               193-431
               

               Cow position:
               chr1:59147151-59147391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 82
               

               Conread position:
               193-437
               

               Cow position:
               chr1:11021209-11020976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               77, 34
               

               Conread position:
               193-450
               

               Cow position:
               chr1:14098975-14098728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               219, 76
               

               Conread position:
               194-384
               

               Cow position:
               chr1:50261741-50261927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               194-445
               

               Cow position:
               chr1:26427674-26427921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               93, 10
               

               Conread position:
               194-451
               

               Cow position:
               chr1:29975424-29975667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               227, 16
               

               Conread position:
               195-366
               

               Cow position:
               chr1:29338104-29337933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               13, 78
               

               Conread position:
               195-386
               

               Cow position:
               chr1:95229143-95229333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               195-451
               

               Cow position:
               chr1:92010503-92010240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               22, 122
               

               Conread position:
               195-467
               

               Cow position:
               chr1:96929216-96928954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               224, 25
               

               Conread position:
               196-321
               

               Cow position:
               chr1:48143692-48143569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               196-355
               

               Cow position:
               chr1:90390194-90390353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               69, 28
               

               Conread position:
               196-441
               

               Cow position:
               chr1:10063800-10064032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               196-451
               

               Cow position:
               chr1:15902681-15902427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 74
               

               Conread position:
               196-451
               

               Cow position:
               chr1:38525794-38525527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               65, 76
               

               Conread position:
               196-451
               

               Cow position:
               chr1:52052528-52052785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               25, 91
               

               Conread position:
               196-451
               

               Cow position:
               chr1:96472620-96472381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               63, 140
               

               Conread position:
               197-376
               

               Cow position:
               chr1:46822154-46821976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               90, 73
               

               Conread position:
               197-451
               

               Cow position:
               chr1:50634075-50634324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               220, 77
               

               Conread position:
               197-451
               

               Cow position:
               chr1:56643419-56643654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               222, 74
               

               Conread position:
               197-451
               

               Cow position:
               chr1:69415525-69415777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 77
               

               Conread position:
               197-454
               

               Cow position:
               chr1:20099551-20099298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               20, 58
               

               Conread position:
               198-373
               

               Cow position:
               chr1:79663250-79663426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               63, 95
               

               Conread position:
               198-431
               

               Cow position:
               chr1:15314733-15314966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               81, 71
               

               Conread position:
               198-451
               

               Cow position:
               chr1:19466239-19465992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               68, 53
               

               Conread position:
               198-451
               

               Cow position:
               chr1:20582125-20581877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               221, 34
               

               Conread position:
               198-451
               

               Cow position:
               chr1:28678707-28678456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               222, 73
               

               Conread position:
               198-451
               

               Cow position:
               chr1:65665236-65664991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               215, 73
               

               Conread position:
               198-451
               

               Cow position:
               chr1:66355530-66355780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               186, 64
               

               Conread position:
               198-451
               

               Cow position:
               chr1:97622036-97622272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               220, 71
               

               Conread position:
               198-454
               

               Cow position:
               chr1:61737280-61737027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               185, 73
               

               Conread position:
               198-455
               

               Cow position:
               chr1:6304674-6304931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               65, 203
               

               Conread position:
               199-356
               

               Cow position:
               chr1:12226917-12227072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-376
               

               Cow position:
               chr1:82076756-82076586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               199-382
               

               Cow position:
               chr1:64624646-64624828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               159, 19
               

               Conread position:
               199-391
               

               Cow position:
               chr1:39183640-39183834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               148, 53
               

               Conread position:
               199-396
               

               Cow position:
               chr1:70416311-70416118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               199-400
               

               Cow position:
               chr1:71782487-71782678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               186, 23
               

               Conread position:
               199-400
               

               Cow position:
               chr1:96346505-96346704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               8, 22
               

               Conread position:
               199-420
               

               Cow position:
               chr1:54289008-54289227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               199-440
               

               Cow position:
               chr1:35170510-35170281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               220, 70
               

               Conread position:
               199-447
               

               Cow position:
               chr1:22526076-22525815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               63, 106
               

               Conread position:
               199-449
               

               Cow position:
               chr1:5278236-5278474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               222, 21
               

               Conread position:
               199-451
               

               Cow position:
               chr1:5102311-5102545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               223, 33
               

               Conread position:
               199-451
               

               Cow position:
               chr1:31871611-31871361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               81, 31
               

               Conread position:
               199-451
               

               Cow position:
               chr1:39224737-39224991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               62, 221
               

               Conread position:
               199-451
               

               Cow position:
               chr1:54217199-54216951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-451
               

               Cow position:
               chr1:82378974-82378724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               165, 70
               

               Conread position:
               199-452
               

               Cow position:
               chr1:46218752-46218507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               88, 70
               

               Conread position:
               200-384
               

               Cow position:
               chr1:80384581-80384763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               200-404
               

               Cow position:
               chr1:53920769-53920571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               200-407
               

               Cow position:
               chr1:38205652-38205449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               91, 20
               

               Conread position:
               200-409
               

               Cow position:
               chr1:3288966-3289167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               201, 32
               

               Conread position:
               200-416
               

               Cow position:
               chr1:18414288-18414498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               168
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               200-437
               

               Cow position:
               chr1:57119165-57119399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               207, 70
               

               Conread position:
               200-444
               

               Cow position:
               chr1:52414782-52415018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               212, 69
               

               Conread position:
               200-447
               

               Cow position:
               chr1:68863220-68862972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               59, 91
               

               Conread position:
               200-448
               

               Cow position:
               chr1:26688290-26688536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               208, 71
               

               Conread position:
               200-449
               

               Cow position:
               chr1:541976-541738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               200-449
               

               Cow position:
               chr1:7142679-7142910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               222, 71
               

               Conread position:
               200-449
               

               Cow position:
               chr1:51904160-51904394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               40, 15
               

               Conread position:
               200-451
               

               Cow position:
               chr1:4788716-4788471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               200-451
               

               Cow position:
               chr1:15028938-15028685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               48, 73
               

               Conread position:
               200-451
               

               Cow position:
               chr1:20000555-20000816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               61, 96
               

               Conread position:
               200-451
               

               Cow position:
               chr1:21787525-21787266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               46, 91
               

               Conread position:
               200-451
               

               Cow position:
               chr1:42545599-42545850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               61, 24
               

               Conread position:
               200-451
               

               Cow position:
               chr1:44747042-44746800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               222, 71
               

               Conread position:
               200-451
               

               Cow position:
               chr1:46839790-46839537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               108, 22
               

               Conread position:
               200-451
               

               Cow position:
               chr1:54478517-54478260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               61, 90
               

               Conread position:
               200-451
               

               Cow position:
               chr1:59650452-59650202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               210, 35
               

               Conread position:
               200-451
               

               Cow position:
               chr1:72732218-72731973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 15
               

               Conread position:
               200-451
               

               Cow position:
               chr1:74946938-74947187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 32
               

               Conread position:
               200-451
               

               Cow position:
               chr1:78791126-78791370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               200-453
               

               Cow position:
               chr1:54125035-54125286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               18, 78
               

               Conread position:
               200-455
               

               Cow position:
               chr1:76096618-76096367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               14, 73
               

               Conread position:
               200-456
               

               Cow position:
               chr1:93110431-93110690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               201-345
               

               Cow position:
               chr1:33921099-33921241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               201-407
               

               Cow position:
               chr1:45925222-45925018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               24, 70
               

               Conread position:
               201-445
               

               Cow position:
               chr1:89548368-89548133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               221, 70
               

               Conread position:
               201-450
               

               Cow position:
               chr1:18283662-18283420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               209, 10
               

               Conread position:
               201-451
               

               Cow position:
               chr1:21934002-21934240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               218, 70
               

               Conread position:
               201-451
               

               Cow position:
               chr1:42541791-42541533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               60, 21
               

               Conread position:
               201-451
               

               Cow position:
               chr1:46205990-46205754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               221, 31
               

               Conread position:
               201-451
               

               Cow position:
               chr1:51565710-51565468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               219, 67
               

               Conread position:
               201-451
               

               Cow position:
               chr1:64189682-64189433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               218, 69
               

               Conread position:
               201-451
               

               Cow position:
               chr1:70533757-70534005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               201, 68
               

               Conread position:
               201-451
               

               Cow position:
               chr1:75998290-75998522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               201-452
               

               Cow position:
               chr1:42555443-42555198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               226, 31
               

               Conread position:
               201-456
               

               Cow position:
               chr1:13195252-13195490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               222, 70
               

               Conread position:
               201-456
               

               Cow position:
               chr1:22777362-22777614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               201-456
               

               Cow position:
               chr1:81300902-81301163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               33, 23
               

               Conread position:
               202-441
               

               Cow position:
               chr1:64218249-64218483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               219, 69
               

               Conread position:
               202-449
               

               Cow position:
               chr1:79115526-79115280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               182, 67
               

               Conread position:
               202-451
               

               Cow position:
               chr1:63504513-63504269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               202-456
               

               Cow position:
               chr1:51257194-51256945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 30
               

               Conread position:
               203-451
               

               Cow position:
               chr1:90413558-90413316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               20, 69
               

               Conread position:
               204-406
               

               Cow position:
               chr1:46006031-46006227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               161
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               76, 16
               

               Conread position:
               204-443
               

               Cow position:
               chr1:24188399-24188170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               215, 48
               

               Conread position:
               204-445
               

               Cow position:
               chr1:26531404-26531645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               126, 19
               

               Conread position:
               204-445
               

               Cow position:
               chr1:69004562-69004336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               215, 14
               

               Conread position:
               204-451
               

               Cow position:
               chr1:32341018-32341273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               111, 66
               

               Conread position:
               206-451
               

               Cow position:
               chr1:53039533-53039765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               178, 63
               

               Conread position:
               206-451
               

               Cow position:
               chr1:95764917-95765154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               216, 63
               

               Conread position:
               206-455
               

               Cow position:
               chr1:24406719-24406962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               66, 51
               

               Conread position:
               207-451
               

               Cow position:
               chr1:3657191-3657427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               210, 61
               

               Conread position:
               207-456
               

               Cow position:
               chr1:25793264-25793504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               193, 75
               

               Conread position:
               208-451
               

               Cow position:
               chr1:30066795-30066553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 60
               

               Conread position:
               216-451
               

               Cow position:
               chr1:31189947-31190173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               216-451
               

               Cow position:
               chr1:81319452-81319228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               153, 35
               

               Conread position:
               222-456
               

               Cow position:
               chr1:31390429-31390661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               117, 8
               

               Conread position:
               224-450
               

               Cow position:
               chr1:85141577-85141794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               224-451
               

               Cow position:
               chr1:50045959-50045736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               224-451
               

               Cow position:
               chr1:58825698-58825477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 43
               

               Conread position:
               224-452
               

               Cow position:
               chr1:59132058-59132277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               224-455
               

               Cow position:
               chr1:80764377-80764606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 47
               

               Conread position:
               224-456
               

               Cow position:
               chr1:2998109-2997877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               17, 92
               

               Conread position:
               225-412
               

               Cow position:
               chr1:35843769-35843954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               225-420
               

               Cow position:
               chr1:72641486-72641679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               76, 45
               

               Conread position:
               225-451
               

               Cow position:
               chr1:30442114-30441892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               202, 46
               

               Conread position:
               227-403
               

               Cow position:
               chr1:62142328-62142503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 44
               

               Conread position:
               227-448
               

               Cow position:
               chr1:88910745-88910960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               67, 44
               

               Conread position:
               228-419
               

               Cow position:
               chr1:32913896-32913709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               228-448
               

               Cow position:
               chr1:97962798-97962581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               64, 43
               

               Conread position:
               230-451
               

               Cow position:
               chr1:72807473-72807257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 40
               

               Conread position:
               230-454
               

               Cow position:
               chr1:8192583-8192798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               231-449
               

               Cow position:
               chr1:89443328-89443544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               188, 31
               

               Conread position:
               232-451
               

               Cow position:
               chr1:75347775-75347557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 39
               

               Conread position:
               239-447
               

               Cow position:
               chr1:41735477-41735684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               143, 23
               

               Conread position:
               239-451
               

               Cow position:
               chr1:38692798-38692600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               113, 29
               

               Conread position:
               239-451
               

               Cow position:
               chr1:77118386-77118600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               35, 77
               

               Conread position:
               239-451
               

               Cow position:
               chr1:80973465-80973670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               183, 32
               

               Conread position:
               239-451
               

               Cow position:
               chr1:95467195-95467397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               239-451
               

               Cow position:
               chr1:96192517-96192727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               85, 32
               

               Conread position:
               239-469
               

               Cow position:
               chr1:77132744-77132520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               145, 44
               

               Conread position:
               240-391
               

               Cow position:
               chr1:44511391-44511540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               240-453
               

               Cow position:
               chr1:48083870-48083660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               180, 34
               

               Conread position:
               243-446
               

               Cow position:
               chr1:85411717-85411518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               72, 28
               

               Conread position:
               245-445
               

               Cow position:
               chr1:5228828-5229026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               245-449
               

               Cow position:
               chr1:21679293-21679090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               120, 23
               

               Conread position:
               245-456
               

               Cow position:
               chr1:5161917-5162118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               177, 10
               

               Conread position:
               247-451
               

               Cow position:
               chr1:62732705-62732512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               249-456
               

               Cow position:
               chr1:39068819-39069024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               250-449
               

               Cow position:
               chr1:10719348-10719543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               171, 18
               

               Conread position:
               250-454
               

               Cow position:
               chr1:101772032-101771836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               172, 21
               

               Conread position:
               251-455
               

               Cow position:
               chr1:50345677-50345474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               170, 19
               

               Conread position:
               252-446
               

               Cow position:
               chr1:39121706-39121899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               166, 20
               

               Conread position:
               253-451
               

               Cow position:
               chr1:15691462-15691269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               8, 18
               

               Conread position:
               260-451
               

               Cow position:
               chr1:83748068-83747876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               16, 27
               

               Conread position:
               263-453
               

               Cow position:
               chr1:24777875-24778052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               265-451
               

               Cow position:
               chr1:73196110-73196298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               26, 18
               

               Conread position:
               266-449
               

               Cow position:
               chr1:2765533-2765349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               271-451
               

               Cow position:
               chr1:6794813-6794989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               151, 46
               

               Conread position:
               271-451
               

               Cow position:
               chr1:45223694-45223515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               271-456
               

               Cow position:
               chr1:63038357-63038169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               107, 181
               

               Conread position:
               274-390
               

               Cow position:
               chr1:69941613-69941729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               274-442
               

               Cow position:
               chr1:4451165-4451328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               87, 43
               

               Conread position:
               277-448
               

               Cow position:
               chr1:57783111-57782943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               142, 40
               

               Conread position:
               280-451
               

               Cow position:
               chr1:56635202-56635031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               14, 6
               

               Conread position:
               282-446
               

               Cow position:
               chr1:93577185-93577349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               138, 26
               

               Conread position:
               293-456
               

               Cow position:
               chr1:99807625-99807790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               294-429
               

               Cow position:
               chr1:92642359-92642493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               129, 23
               

               Conread position:
               315-454
               

               Cow position:
               chr1:99321277-99321417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               104, 79
               

               Conread position:
               318-451
               

               Cow position:
               chr1:7609686-7609552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               184-451
               

               Cow position:
               chr10:4827854-4828117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               189, 85
               

               Conread position:
               186-449
               

               Cow position:
               chr10:42755480-42755229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               103, 36
               

               Conread position:
               189-437
               

               Cow position:
               chr10:2406969-2407212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               226, 52
               

               Conread position:
               192-349
               

               Cow position:
               chr10:64364378-64364222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               192-356
               

               Cow position:
               chr10:47789181-47789017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               192-456
               

               Cow position:
               chr10:29339237-29339490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               99, 65
               

               Conread position:
               193-451
               

               Cow position:
               chr10:52589521-52589786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               154, 78
               

               Conread position:
               194-450
               

               Cow position:
               chr10:28152219-28152473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               98, 26
               

               Conread position:
               194-451
               

               Cow position:
               chr10:56705427-56705682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 75
               

               Conread position:
               195-441
               

               Cow position:
               chr10:66311368-66311126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               99, 9
               

               Conread position:
               196-443
               

               Cow position:
               chr10:20109794-20110029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               196-447
               

               Cow position:
               chr10:60388606-60388857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               128, 39
               

               Conread position:
               196-450
               

               Cow position:
               chr10:62517039-62516787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               222, 75
               

               Conread position:
               197-356
               

               Cow position:
               chr10:49586310-49586468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               197-445
               

               Cow position:
               chr10:15391645-15391400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               123, 74
               

               Conread position:
               197-449
               

               Cow position:
               chr10:9529840-9530078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               224, 35
               

               Conread position:
               197-451
               

               Cow position:
               chr10:16683655-16683905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               90, 21
               

               Conread position:
               197-451
               

               Cow position:
               chr10:54947970-54948229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               63, 102
               

               Conread position:
               197-451
               

               Cow position:
               chr10:65558539-65558790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               198-355
               

               Cow position:
               chr10:41672358-41672520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               68, 102
               

               Conread position:
               198-380
               

               Cow position:
               chr10:32560856-32560677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               198-407
               

               Cow position:
               chr10:52244492-52244699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               198-417
               

               Cow position:
               chr10:34168027-34167825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               198-451
               

               Cow position:
               chr10:6038189-6038431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               220, 38
               

               Conread position:
               198-451
               

               Cow position:
               chr10:9341581-9341827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               100, 72
               

               Conread position:
               198-451
               

               Cow position:
               chr10:17863736-17863488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               221, 9
               

               Conread position:
               198-451
               

               Cow position:
               chr10:25479246-25479008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               221, 76
               

               Conread position:
               198-451
               

               Cow position:
               chr10:57461526-57461260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               198-451
               

               Cow position:
               chr10:58608257-58608015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               198-455
               

               Cow position:
               chr10:27538655-27538403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               7, 72
               

               Conread position:
               199-399
               

               Cow position:
               chr10:28492308-28492512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               22, 74
               

               Conread position:
               199-420
               

               Cow position:
               chr10:39081547-39081333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-447
               

               Cow position:
               chr10:8412900-8413141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               219, 23
               

               Conread position:
               199-448
               

               Cow position:
               chr10:37707242-37706994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               64, 74
               

               Conread position:
               199-450
               

               Cow position:
               chr10:53365188-53364932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               63, 23
               

               Conread position:
               199-450
               

               Cow position:
               chr10:55012287-55012047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               41, 73
               

               Conread position:
               199-450
               

               Cow position:
               chr10:62290470-62290723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               82, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr10:19704358-19704609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               219, 118
               

               Conread position:
               199-451
               

               Cow position:
               chr10:22708352-22708110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               199-451
               

               Cow position:
               chr10:23404352-23404106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               223, 33
               

               Conread position:
               199-451
               

               Cow position:
               chr10:23948765-23949016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               223, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr10:42454273-42454034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-451
               

               Cow position:
               chr10:49624921-49624670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               221, 75
               

               Conread position:
               199-451
               

               Cow position:
               chr10:50776859-50776613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               142, 62
               

               Conread position:
               199-451
               

               Cow position:
               chr10:69226082-69225830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               50, 74
               

               Conread position:
               199-455
               

               Cow position:
               chr10:21447761-21448004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               169, 60
               

               Conread position:
               199-457
               

               Cow position:
               chr10:11403986-11404237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               221, 50
               

               Conread position:
               199-465
               

               Cow position:
               chr10:11317106-11316849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               200-352
               

               Cow position:
               chr10:11497374-11497223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               143, 69
               

               Conread position:
               200-362
               

               Cow position:
               chr10:61426582-61426742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               200-371
               

               Cow position:
               chr10:37884642-37884814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               61, 91
               

               Conread position:
               200-390
               

               Cow position:
               chr10:1108310-1108499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               87, 71
               

               Conread position:
               200-417
               

               Cow position:
               chr10:29689180-29689394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               200-438
               

               Cow position:
               chr10:65071965-65072200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               219, 51
               

               Conread position:
               200-449
               

               Cow position:
               chr10:51220924-51221157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               218, 32
               

               Conread position:
               200-451
               

               Cow position:
               chr10:2849500-2849254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               190, 56
               

               Conread position:
               200-451
               

               Cow position:
               chr10:22479574-22479819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               219, 60
               

               Conread position:
               200-451
               

               Cow position:
               chr10:30741527-30741284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               219, 20
               

               Conread position:
               200-451
               

               Cow position:
               chr10:41984734-41984983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               222, 71
               

               Conread position:
               200-451
               

               Cow position:
               chr10:45606281-45606518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               200-451
               

               Cow position:
               chr10:48741011-48741253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               85, 59
               

               Conread position:
               200-451
               

               Cow position:
               chr10:62325763-62325520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               219, 71
               

               Conread position:
               200-452
               

               Cow position:
               chr10:19590611-19590860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 38
               

               Conread position:
               200-452
               

               Cow position:
               chr10:38429399-38429642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               222, 32
               

               Conread position:
               200-454
               

               Cow position:
               chr10:69544190-69544433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               86, 43
               

               Conread position:
               200-455
               

               Cow position:
               chr10:24786261-24786007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               91, 78
               

               Conread position:
               200-456
               

               Cow position:
               chr10:26145258-26145518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               173, 55
               

               Conread position:
               201-369
               

               Cow position:
               chr10:52069823-52069988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               201-438
               

               Cow position:
               chr10:33240530-33240763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               201-448
               

               Cow position:
               chr10:3115634-3115388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               201-449
               

               Cow position:
               chr10:67020767-67020534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               201-451
               

               Cow position:
               chr10:31368583-31368828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               220, 21
               

               Conread position:
               201-455
               

               Cow position:
               chr10:48178509-48178255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               93, 34
               

               Conread position:
               201-456
               

               Cow position:
               chr10:19126764-19127006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               212, 19
               

               Conread position:
               201-456
               

               Cow position:
               chr10:64285630-64285895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               60, 101
               

               Conread position:
               202-454
               

               Cow position:
               chr10:6568375-6568136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               202, 18
               

               Conread position:
               202-454
               

               Cow position:
               chr10:10124494-10124246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               162, 69
               

               Conread position:
               204-452
               

               Cow position:
               chr10:35911613-35911845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               214, 65
               

               Conread position:
               206-449
               

               Cow position:
               chr10:15873933-15874168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               208-451
               

               Cow position:
               chr10:12100398-12100643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               64, 20
               

               Conread position:
               208-451
               

               Cow position:
               chr10:32584057-32583816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               213, 63
               

               Conread position:
               209-451
               

               Cow position:
               chr10:48255080-48255318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               212, 61
               

               Conread position:
               209-456
               

               Cow position:
               chr10:21082534-21082285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               52, 94
               

               Conread position:
               210-417
               

               Cow position:
               chr10:58746108-58746313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               132, 22
               

               Conread position:
               215-445
               

               Cow position:
               chr10:1070006-1070234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               17, 57
               

               Conread position:
               215-448
               

               Cow position:
               chr10:66874683-66874912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               200, 20
               

               Conread position:
               217-430
               

               Cow position:
               chr10:9794525-9794730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               25, 5
               

               Conread position:
               224-391
               

               Cow position:
               chr10:16649800-16649962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               224-391
               

               Cow position:
               chr10:38449184-38449347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               224-407
               

               Cow position:
               chr10:8330747-8330565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               46, 97
               

               Conread position:
               224-451
               

               Cow position:
               chr10:26620432-26620654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               132, 46
               

               Conread position:
               227-443
               

               Cow position:
               chr10:38518506-38518715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               65, 43
               

               Conread position:
               227-445
               

               Cow position:
               chr10:28038807-28039024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               65, 44
               

               Conread position:
               227-451
               

               Cow position:
               chr10:23096650-23096877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               230-451
               

               Cow position:
               chr10:50044521-50044743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               94, 32
               

               Conread position:
               235-451
               

               Cow position:
               chr10:68857544-68857758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               77, 34
               

               Conread position:
               240-379
               

               Cow position:
               chr10:65130372-65130507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               240-451
               

               Cow position:
               chr10:6490651-6490860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               179, 36
               

               Conread position:
               241-451
               

               Cow position:
               chr10:66753351-66753143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               179, 30
               

               Conread position:
               242-408
               

               Cow position:
               chr10:1478321-1478487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               109, 28
               

               Conread position:
               242-456
               

               Cow position:
               chr10:11032389-11032594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               243-432
               

               Cow position:
               chr10:30449953-30450141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               159, 28
               

               Conread position:
               244-451
               

               Cow position:
               chr10:64721897-64722098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               246-384
               

               Cow position:
               chr10:46067213-46067076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               249-455
               

               Cow position:
               chr10:13311836-13311633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               250-448
               

               Cow position:
               chr10:49472411-49472610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               22, 41
               

               Conread position:
               250-456
               

               Cow position:
               chr10:31855438-31855232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               105, 20
               

               Conread position:
               253-451
               

               Cow position:
               chr10:21424579-21424771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               165, 18
               

               Conread position:
               259-450
               

               Cow position:
               chr10:31779174-31779364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               259-451
               

               Cow position:
               chr10:29279540-29279347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               28, 12
               

               Conread position:
               260-455
               

               Cow position:
               chr10:4184291-4184094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 32
               

               Conread position:
               265-451
               

               Cow position:
               chr10:28340954-28340772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               154, 8
               

               Conread position:
               271-451
               

               Cow position:
               chr10:25699733-25699556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               16, 20
               

               Conread position:
               275-451
               

               Cow position:
               chr10:8219365-8219191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               143, 50
               

               Conread position:
               289-451
               

               Cow position:
               chr10:20478964-20478805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               18, 29
               

               Conread position:
               314-451
               

               Cow position:
               chr10:58399240-58399378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               184-378
               

               Cow position:
               chr11:35668274-35668471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               143, 35
               

               Conread position:
               191-449
               

               Cow position:
               chr11:55821549-55821791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               49, 25
               

               Conread position:
               193-410
               

               Cow position:
               chr11:14941444-14941654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               211, 76
               

               Conread position:
               193-455
               

               Cow position:
               chr11:47565772-47566032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               159, 16
               

               Conread position:
               194-345
               

               Cow position:
               chr11:39864361-39864210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               13, 79
               

               Conread position:
               194-355
               

               Cow position:
               chr11:45553918-45553765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               195-398
               

               Cow position:
               chr11:14045915-14046113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               195-407
               

               Cow position:
               chr11:29802430-29802632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               97, 20
               

               Conread position:
               196-381
               

               Cow position:
               chr11:75255563-75255389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               196-451
               

               Cow position:
               chr11:21852133-21852393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               67, 100
               

               Conread position:
               196-451
               

               Cow position:
               chr11:48650939-48650707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               226, 31
               

               Conread position:
               196-451
               

               Cow position:
               chr11:56821079-56821339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               176, 73
               

               Conread position:
               196-456
               

               Cow position:
               chr11:51729457-51729194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               65, 203
               

               Conread position:
               196-456
               

               Cow position:
               chr11:55762039-55761777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               67, 13
               

               Conread position:
               197-339
               

               Cow position:
               chr11:54058153-54058013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               197-451
               

               Cow position:
               chr11:37372473-37372220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               143, 63
               

               Conread position:
               197-451
               

               Cow position:
               chr11:43525959-43526216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               69, 128
               

               Conread position:
               197-451
               

               Cow position:
               chr11:45890121-45889876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               198-368
               

               Cow position:
               chr11:35882072-35881903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               85, 71
               

               Conread position:
               198-410
               

               Cow position:
               chr11:63508572-63508366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               205, 73
               

               Conread position:
               198-438
               

               Cow position:
               chr11:67236556-67236325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               223, 22
               

               Conread position:
               198-448
               

               Cow position:
               chr11:62215031-62215277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               148, 65
               

               Conread position:
               198-451
               

               Cow position:
               chr11:18572964-18572713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               63, 89
               

               Conread position:
               198-451
               

               Cow position:
               chr11:54133926-54134160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               198-451
               

               Cow position:
               chr11:69402090-69402339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 72
               

               Conread position:
               198-456
               

               Cow position:
               chr11:16001087-16000834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               117, 73
               

               Conread position:
               198-490
               

               Cow position:
               chr11:30211066-30210778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               63, 22
               

               Conread position:
               199-351
               

               Cow position:
               chr11:49218187-49218338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               199-355
               

               Cow position:
               chr11:372984-373139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               151, 72
               

               Conread position:
               199-356
               

               Cow position:
               chr11:40269438-40269589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               199-391
               

               Cow position:
               chr11:19606472-19606288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               199-406
               

               Cow position:
               chr11:40275441-40275645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-406
               

               Cow position:
               chr11:40278933-40279137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-410
               

               Cow position:
               chr11:23047604-23047806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-415
               

               Cow position:
               chr11:19502128-19501914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               213, 70
               

               Conread position:
               199-418
               

               Cow position:
               chr11:38639279-38639055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               62, 93
               

               Conread position:
               199-420
               

               Cow position:
               chr11:46705379-46705595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               48, 119
               

               Conread position:
               199-437
               

               Cow position:
               chr11:81518020-81518249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               220, 19
               

               Conread position:
               199-450
               

               Cow position:
               chr11:17151831-17151586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               220, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr11:11752356-11752606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               221, 71
               

               Conread position:
               199-451
               

               Cow position:
               chr11:12111296-12111542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               73, 96
               

               Conread position:
               199-451
               

               Cow position:
               chr11:18699050-18698789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 101
               

               Conread position:
               199-451
               

               Cow position:
               chr11:41272298-41272047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               222, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr11:42083633-42083384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               62, 95
               

               Conread position:
               199-451
               

               Cow position:
               chr11:44815664-44815417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               227, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr11:49153120-49152863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               60, 102
               

               Conread position:
               199-451
               

               Cow position:
               chr11:53445930-53445688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               220, 33
               

               Conread position:
               199-451
               

               Cow position:
               chr11:54244833-54244590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               220, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr11:63156764-63156997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               220, 52
               

               Conread position:
               199-454
               

               Cow position:
               chr11:84795592-84795842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               219, 19
               

               Conread position:
               200-326
               

               Cow position:
               chr11:76851678-76851802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               200-345
               

               Cow position:
               chr11:22009227-22009371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               200-356
               

               Cow position:
               chr11:5188285-5188134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               200-371
               

               Cow position:
               chr11:44609719-44609555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               200-374
               

               Cow position:
               chr11:48900680-48900858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               200-379
               

               Cow position:
               chr11:58112768-58112945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               200-383
               

               Cow position:
               chr11:60985123-60985299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               200-407
               

               Cow position:
               chr11:65958541-65958745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               17, 71
               

               Conread position:
               200-429
               

               Cow position:
               chr11:52402622-52402396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               208, 29
               

               Conread position:
               200-431
               

               Cow position:
               chr11:75874593-75874826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               76, 198
               

               Conread position:
               200-437
               

               Cow position:
               chr11:27722552-27722316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               220, 68
               

               Conread position:
               200-438
               

               Cow position:
               chr11:1596303-1596531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               103, 58
               

               Conread position:
               200-445
               

               Cow position:
               chr11:62599361-62599130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               215, 69
               

               Conread position:
               200-446
               

               Cow position:
               chr11:21136973-21136729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               205, 69
               

               Conread position:
               200-449
               

               Cow position:
               chr11:65988380-65988144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               219, 18
               

               Conread position:
               200-451
               

               Cow position:
               chr11:24967598-24967366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               40, 11
               

               Conread position:
               200-451
               

               Cow position:
               chr11:28395635-28395382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               220, 73
               

               Conread position:
               200-451
               

               Cow position:
               chr11:32438793-32439040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 70
               

               Conread position:
               200-451
               

               Cow position:
               chr11:38794691-38794458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               200-451
               

               Cow position:
               chr11:47125703-47125459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               87, 71
               

               Conread position:
               200-451
               

               Cow position:
               chr11:47193673-47193431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               200-451
               

               Cow position:
               chr11:50937579-50937836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               59, 183
               

               Conread position:
               200-451
               

               Cow position:
               chr11:53452190-53452436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               221, 60
               

               Conread position:
               200-451
               

               Cow position:
               chr11:67871444-67871693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               205, 70
               

               Conread position:
               200-456
               

               Cow position:
               chr11:8828473-8828723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               221, 71
               

               Conread position:
               200-456
               

               Cow position:
               chr11:9368985-9368733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 71
               

               Conread position:
               200-456
               

               Cow position:
               chr11:38845108-38845356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               219, 22
               

               Conread position:
               200-459
               

               Cow position:
               chr11:6041595-6041849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               188, 29
               

               Conread position:
               200-459
               

               Cow position:
               chr11:9056116-9055862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               219, 44
               

               Conread position:
               200-481
               

               Cow position:
               chr11:26468306-26468027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               201-356
               

               Cow position:
               chr11:34136660-34136507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               201-369
               

               Cow position:
               chr11:6729826-6729659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               150, 70
               

               Conread position:
               201-415
               

               Cow position:
               chr11:61427746-61427541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               201-428
               

               Cow position:
               chr11:11785491-11785265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               93, 69
               

               Conread position:
               201-442
               

               Cow position:
               chr11:19259354-19259594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               94, 69
               

               Conread position:
               201-451
               

               Cow position:
               chr11:1668824-1668588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               201-451
               

               Cow position:
               chr11:9874471-9874231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               218, 73
               

               Conread position:
               201-451
               

               Cow position:
               chr11:32072301-32072061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               221, 68
               

               Conread position:
               201-451
               

               Cow position:
               chr11:34945913-34946161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 70
               

               Conread position:
               201-451
               

               Cow position:
               chr11:51745501-51745267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               221, 33
               

               Conread position:
               201-451
               

               Cow position:
               chr11:62573850-62574094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               95, 67
               

               Conread position:
               201-451
               

               Cow position:
               chr11:77683330-77683079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               139, 68
               

               Conread position:
               201-455
               

               Cow position:
               chr11:14308793-14308544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               215, 47
               

               Conread position:
               201-455
               

               Cow position:
               chr11:52832568-52832809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               220, 19
               

               Conread position:
               201-480
               

               Cow position:
               chr11:84890549-84890838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               8, 99
               

               Conread position:
               202-422
               

               Cow position:
               chr11:5648896-5648684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               216, 68
               

               Conread position:
               202-448
               

               Cow position:
               chr11:50953406-50953652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               202, 68
               

               Conread position:
               202-451
               

               Cow position:
               chr11:7001772-7002022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               129, 69
               

               Conread position:
               203-445
               

               Cow position:
               chr11:16232778-16233024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               134, 68
               

               Conread position:
               203-451
               

               Cow position:
               chr11:31507004-31506756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               82, 60
               

               Conread position:
               203-452
               

               Cow position:
               chr11:27681657-27681409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 68
               

               Conread position:
               206-447
               

               Cow position:
               chr11:4059909-4060143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               134, 52
               

               Conread position:
               207-410
               

               Cow position:
               chr11:31422883-31422682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               208-450
               

               Cow position:
               chr11:19586612-19586367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               86, 78
               

               Conread position:
               210-524
               

               Cow position:
               chr11:696199-696502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               209, 61
               

               Conread position:
               213-447
               

               Cow position:
               chr11:59365928-59366163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               144, 55
               

               Conread position:
               213-456
               

               Cow position:
               chr11:50951701-50951461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               191, 57
               

               Conread position:
               217-451
               

               Cow position:
               chr11:2484377-2484602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               202, 10
               

               Conread position:
               224-454
               

               Cow position:
               chr11:67174842-67174628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               195, 49
               

               Conread position:
               225-449
               

               Cow position:
               chr11:7684091-7683878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               176, 45
               

               Conread position:
               227-370
               

               Cow position:
               chr11:77008173-77008033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               227-451
               

               Cow position:
               chr11:64905130-64904909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               145, 44
               

               Conread position:
               229-452
               

               Cow position:
               chr11:25112387-25112609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               190, 76
               

               Conread position:
               235-451
               

               Cow position:
               chr11:20491691-20491483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               150, 14
               

               Conread position:
               239-447
               

               Cow position:
               chr11:60137810-60137609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               181, 32
               

               Conread position:
               240-451
               

               Cow position:
               chr11:12949830-12950034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               179, 21
               

               Conread position:
               241-407
               

               Cow position:
               chr11:76404417-76404256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               72, 27
               

               Conread position:
               241-428
               

               Cow position:
               chr11:72082822-72082641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               180, 30
               

               Conread position:
               241-451
               

               Cow position:
               chr11:24243911-24243705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               141, 29
               

               Conread position:
               242-396
               

               Cow position:
               chr11:8232333-8232484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               243-451
               

               Cow position:
               chr11:27765272-27765062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 18
               

               Conread position:
               243-451
               

               Cow position:
               chr11:35775454-35775250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               176, 28
               

               Conread position:
               243-452
               

               Cow position:
               chr11:32398750-32398547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               44, 19
               

               Conread position:
               252-451
               

               Cow position:
               chr11:16540972-16540773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               18, 40
               

               Conread position:
               252-451
               

               Cow position:
               chr11:46413680-46413488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               255-456
               

               Cow position:
               chr11:9083582-9083382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               163, 68
               

               Conread position:
               256-451
               

               Cow position:
               chr11:21473020-21473206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               166, 15
               

               Conread position:
               259-456
               

               Cow position:
               chr11:70097382-70097191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               163, 14
               

               Conread position:
               260-414
               

               Cow position:
               chr11:39250070-39249918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               260-451
               

               Cow position:
               chr11:36658722-36658909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               260-454
               

               Cow position:
               chr11:66188217-66188414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               129, 33
               

               Conread position:
               261-451
               

               Cow position:
               chr11:65444749-65444934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               158, 9
               

               Conread position:
               262-456
               

               Cow position:
               chr11:46024609-46024791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               263-451
               

               Cow position:
               chr11:11125758-11125574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               31, 10
               

               Conread position:
               263-451
               

               Cow position:
               chr11:37160887-37160698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               52, 8
               

               Conread position:
               265-451
               

               Cow position:
               chr11:67745415-67745234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               155, 24
               

               Conread position:
               265-456
               

               Cow position:
               chr11:25331649-25331833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               19, 53
               

               Conread position:
               275-451
               

               Cow position:
               chr11:52983761-52983588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               12, 16
               

               Conread position:
               286-451
               

               Cow position:
               chr11:16261951-16262116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               141, 5
               

               Conread position:
               310-451
               

               Cow position:
               chr11:42232657-42232517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               113, 37
               

               Conread position:
               348-455
               

               Cow position:
               chr11:8846480-8846588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               182-451
               

               Cow position:
               chr12:37728304-37728031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               79, 106
               

               Conread position:
               186-451
               

               Cow position:
               chr12:18577998-18577729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               75, 221
               

               Conread position:
               192-451
               

               Cow position:
               chr12:37732631-37732893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               69, 95
               

               Conread position:
               194-421
               

               Cow position:
               chr12:47486978-47486751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               186, 79
               

               Conread position:
               195-439
               

               Cow position:
               chr12:4583085-4582847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               195, 38
               

               Conread position:
               195-444
               

               Cow position:
               chr12:12331366-12331611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               196-403
               

               Cow position:
               chr12:18094032-18093831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               87, 73
               

               Conread position:
               196-435
               

               Cow position:
               chr12:40715906-40716134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               196-451
               

               Cow position:
               chr12:48425852-48425602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               223, 75
               

               Conread position:
               197-455
               

               Cow position:
               chr12:1333377-1333115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               197-456
               

               Cow position:
               chr12:33458281-33458031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               216, 59
               

               Conread position:
               198-371
               

               Cow position:
               chr12:39781200-39781370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               198-445
               

               Cow position:
               chr12:47804294-47804051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               89, 61
               

               Conread position:
               198-455
               

               Cow position:
               chr12:749498-749255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               229, 70
               

               Conread position:
               199-354
               

               Cow position:
               chr12:8980914-8981067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               10, 22
               

               Conread position:
               199-370
               

               Cow position:
               chr12:11520312-11520147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               199-382
               

               Cow position:
               chr12:11080960-11081141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               173, 70
               

               Conread position:
               199-409
               

               Cow position:
               chr12:10763404-10763188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               199-437
               

               Cow position:
               chr12:29691057-29691298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               43, 47
               

               Conread position:
               199-437
               

               Cow position:
               chr12:41642571-41642334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               152, 72
               

               Conread position:
               199-438
               

               Cow position:
               chr12:40931476-40931710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               223, 71
               

               Conread position:
               199-441
               

               Cow position:
               chr12:5658607-5658848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               161, 75
               

               Conread position:
               199-444
               

               Cow position:
               chr12:5680823-5680578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               93, 72
               

               Conread position:
               199-447
               

               Cow position:
               chr12:5714776-5714523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 101
               

               Conread position:
               199-451
               

               Cow position:
               chr12:7996550-7996304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               219, 75
               

               Conread position:
               199-451
               

               Cow position:
               chr12:25619239-25619482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               223, 72
               

               Conread position:
               199-451
               

               Cow position:
               chr12:30210628-30210373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 236
               

               Conread position:
               199-451
               

               Cow position:
               chr12:45225850-45226098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 72
               

               Conread position:
               200-382
               

               Cow position:
               chr12:14855951-14855772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 73
               

               Conread position:
               200-390
               

               Cow position:
               chr12:34242187-34242375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               200-407
               

               Cow position:
               chr12:1883400-1883595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               200-421
               

               Cow position:
               chr12:30065071-30064859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               200-436
               

               Cow position:
               chr12:42478148-42477918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               189, 68
               

               Conread position:
               200-445
               

               Cow position:
               chr12:34465861-34466110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 94
               

               Conread position:
               200-451
               

               Cow position:
               chr12:1031121-1030869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               75, 92
               

               Conread position:
               200-451
               

               Cow position:
               chr12:1505154-1504914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               200-451
               

               Cow position:
               chr12:25606845-25606593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               200-453
               

               Cow position:
               chr12:30413801-30414059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               69, 199
               

               Conread position:
               200-455
               

               Cow position:
               chr12:18768934-18769186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               165, 32
               

               Conread position:
               200-455
               

               Cow position:
               chr12:42918602-42918357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               219, 69
               

               Conread position:
               200-456
               

               Cow position:
               chr12:29448782-29448529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               128, 20
               

               Conread position:
               201-343
               

               Cow position:
               chr12:24681956-24681816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               201-391
               

               Cow position:
               chr12:5497692-5497872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               201-402
               

               Cow position:
               chr12:3816624-3816423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               110, 71
               

               Conread position:
               201-424
               

               Cow position:
               chr12:18966619-18966837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               158, 70
               

               Conread position:
               201-445
               

               Cow position:
               chr12:23983801-23983558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               94, 121
               

               Conread position:
               202-443
               

               Cow position:
               chr12:27055739-27055504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 18
               

               Conread position:
               202-451
               

               Cow position:
               chr12:1223212-1223452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               218, 20
               

               Conread position:
               202-451
               

               Cow position:
               chr12:16543442-16543685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               74, 20
               

               Conread position:
               202-451
               

               Cow position:
               chr12:30596605-30596360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               129, 68
               

               Conread position:
               203-451
               

               Cow position:
               chr12:24559494-24559247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 68
               

               Conread position:
               204-391
               

               Cow position:
               chr12:44908150-44907966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               87, 65
               

               Conread position:
               207-344
               

               Cow position:
               chr12:28017177-28017042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               208-420
               

               Cow position:
               chr12:3616132-3615923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               53, 87
               

               Conread position:
               209-377
               

               Cow position:
               chr12:25933812-25933648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               223-451
               

               Cow position:
               chr12:27038627-27038865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               224-446
               

               Cow position:
               chr12:31528741-31528955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               224-451
               

               Cow position:
               chr12:32413630-32413402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               151, 46
               

               Conread position:
               226-451
               

               Cow position:
               chr12:27366038-27365817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               198, 27
               

               Conread position:
               227-401
               

               Cow position:
               chr12:13657632-13657804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               164, 44
               

               Conread position:
               228-451
               

               Cow position:
               chr12:31517054-31517282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               240-445
               

               Cow position:
               chr12:31198866-31198661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               161
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               179, 31
               

               Conread position:
               241-456
               

               Cow position:
               chr12:14325175-14325383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               178, 27
               

               Conread position:
               241-456
               

               Cow position:
               chr12:23379669-23379463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               248-450
               

               Cow position:
               chr12:31429478-31429678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               17, 44
               

               Conread position:
               249-450
               

               Cow position:
               chr12:25312284-25312478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               170, 22
               

               Conread position:
               259-451
               

               Cow position:
               chr12:26217745-26217935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               35, 12
               

               Conread position:
               264-451
               

               Cow position:
               chr12:18765897-18766087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               23, 27
               

               Conread position:
               290-451
               

               Cow position:
               chr12:38484344-38484501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               107, 31
               

               Conread position:
               311-456
               

               Cow position:
               chr12:33756881-33757024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               107, 135
               

               Conread position:
               317-456
               

               Cow position:
               chr12:41596842-41596701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               349-451
               

               Cow position:
               chr12:16851015-16851118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               85
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               184-451
               

               Cow position:
               chr13:16343485-16343742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               96, 107
               

               Conread position:
               185-454
               

               Cow position:
               chr13:43193964-43194236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               18, 36
               

               Conread position:
               190-355
               

               Cow position:
               chr13:54564839-54564675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               192-451
               

               Cow position:
               chr13:59688080-59687825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               69, 78
               

               Conread position:
               193-410
               

               Cow position:
               chr13:32904581-32904795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 0
               
195-451UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr13:33161190-33160939 (view  custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               212, 76
               
195-456UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr13:46284804-46284554 (view  custom track)

               
               
               
Alignm length: 263

               
               
               
Alignm identity: 188

               
               
               
Alignm E-value: 2e-35

               
               
               
Alignm gaps (pig, cow): 226, 38
195-468UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr13:32167507-32167241 (view  custom track)

               
               
               
Alignm length: 276

               
               
               
Alignm identity: 203

               
               
               
Alignm E-value: 9.94922e-44

               
               
               
Alignm gaps (pig, cow): 24, 11

               
               
               Conread position:196-427
               
               
               Cow position:chr13:43156051-43155822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):222, 75

               
               
               Conread position:196-427
               
               
               Cow position:chr13:43167227-43167000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:196-445
               
               
               Cow position:chr13:21628076-21627833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):177, 73

               
               
               Conread position:196-452
               
               
               Cow position:chr13:33975237-33975473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:196-459
               
               
               Cow position:chr13:12233649-12233391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):144, 73

               
               
               Conread position:197-431
               
               
               Cow position:chr13:11794257-11794476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr13:9664870-9665117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:197-451
               
               
               Cow position:chr13:13578229-13577978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):138, 73

               
               
               Conread position:197-451
               
               
               Cow position:chr13:25435318-25435064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:197-451
               
               
               Cow position:chr13:37558089-37558336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):224, 74

               
               
               Conread position:197-451
               
               
               Cow position:chr13:49200446-49200692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 20

               
               
               Conread position:197-454
               
               
               Cow position:chr13:34995524-34995265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:198-326
               
               
               Cow position:chr13:19239227-19239353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:198-410
               
               
               Cow position:chr13:54815107-54814897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:198-451
               
               
               Cow position:chr13:10932362-10932610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:198-451
               
               
               Cow position:chr13:12323991-12324239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:198-451
               
               
               Cow position:chr13:12521972-12521730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr13:22075477-22075728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):216, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr13:34664937-34665185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:198-451
               
               
               Cow position:chr13:47322603-47322349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:198-456
               
               
               Cow position:chr13:47188250-47188504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):196, 22

               
               
               Conread position:199-345
               
               
               Cow position:chr13:56270432-56270285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:199-345
               
               
               Cow position:chr13:56281040-56281187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:199-383
               
               
               Cow position:chr13:17991466-17991644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-384
               
               
               Cow position:chr13:14209703-14209904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:199-431
               
               
               Cow position:chr13:38631773-38631539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:199-445
               
               
               Cow position:chr13:52251992-52251752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:199-447
               
               
               Cow position:chr13:16020649-16020904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:199-451
               
               
               Cow position:chr13:661829-661586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):222, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr13:2803276-2803528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 64

               
               
               Conread position:199-451
               
               
               Cow position:chr13:9083191-9082952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:199-451
               
               
               Cow position:chr13:29814360-29814598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):220, 52

               
               
               Conread position:199-456
               
               
               Cow position:chr13:15091100-15090847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):220, 33

               
               
               Conread position:199-456
               
               
               Cow position:chr13:30509873-30510120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):221, 23

               
               
               Conread position:200-356
               
               
               Cow position:chr13:57341482-57341330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-379
               
               
               Cow position:chr13:1558705-1558529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-385
               
               
               Cow position:chr13:7046671-7046863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:200-390
               
               
               Cow position:chr13:8822678-8822859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:200-390
               
               
               Cow position:chr13:29820398-29820210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-391
               
               
               Cow position:chr13:49457493-49457679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:200-397
               
               
               Cow position:chr13:31852576-31852766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:200-406
               
               
               Cow position:chr13:17796176-17796380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:200-407
               
               
               Cow position:chr13:32718055-32717851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:200-410
               
               
               Cow position:chr13:26523128-26522920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:200-420
               
               
               Cow position:chr13:20156295-20156506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-443
               
               
               Cow position:chr13:8245523-8245284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:200-448
               
               
               Cow position:chr13:30271132-30271377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:200-449
               
               
               Cow position:chr13:47502900-47502670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):168, 62

               
               
               Conread position:200-450
               
               
               Cow position:chr13:15945284-15945539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr13:6079612-6079363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 208

               
               
               Conread position:200-451
               
               
               Cow position:chr13:9802877-9803125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):193, 42

               
               
               Conread position:200-451
               
               
               Cow position:chr13:18550813-18551048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr13:20180224-20180471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr13:29630683-29630913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):219, 27

               
               
               Conread position:200-451
               
               
               Cow position:chr13:34761493-34761735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):209, 60

               
               
               Conread position:200-451
               
               
               Cow position:chr13:54094618-54094869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):214, 71

               
               
               Conread position:200-455
               
               
               Cow position:chr13:11768236-11767982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:200-455
               
               
               Cow position:chr13:25537428-25537686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:201-353
               
               
               Cow position:chr13:34689740-34689891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:201-411
               
               
               Cow position:chr13:40464039-40464244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-432
               
               
               Cow position:chr13:33346948-33347164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):219, 17

               
               
               Conread position:201-447
               
               
               Cow position:chr13:20839372-20839615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:201-451
               
               
               Cow position:chr13:1958817-1959066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:201-451
               
               
               Cow position:chr13:6621781-6621533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:201-451
               
               
               Cow position:chr13:6759976-6759738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):221, 17

               
               
               Conread position:201-451
               
               
               Cow position:chr13:12745482-12745730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):149, 21

               
               
               Conread position:201-451
               
               
               Cow position:chr13:13446345-13446104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:201-451
               
               
               Cow position:chr13:20466476-20466229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:201-456
               
               
               Cow position:chr13:24715041-24715304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:202-367
               
               
               Cow position:chr13:50824005-50823838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):138, 68

               
               
               Conread position:202-407
               
               
               Cow position:chr13:9161727-9161936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 89

               
               
               Conread position:202-443
               
               
               Cow position:chr13:18761918-18761684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):216, 69

               
               
               Conread position:202-451
               
               
               Cow position:chr13:17886328-17886564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):217, 68

               
               
               Conread position:202-468
               
               
               Cow position:chr13:29831634-29831366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:207-451
               
               
               Cow position:chr13:12206859-12207099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:207-451
               
               
               Cow position:chr13:14717523-14717280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):212, 64

               
               
               Conread position:208-352
               
               
               Cow position:chr13:25057971-25058113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:208-443
               
               
               Cow position:chr13:23265548-23265782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:209-451
               
               
               Cow position:chr13:52748977-52748740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):212, 62

               
               
               Conread position:210-416
               
               
               Cow position:chr13:52569185-52568980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:213-456
               
               
               Cow position:chr13:54969984-54969741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:215-451
               
               
               Cow position:chr13:33955204-33954974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:224-449
               
               
               Cow position:chr13:60651074-60650849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 170

               
               
               Conread position:225-413
               
               
               Cow position:chr13:58621111-58620926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):158, 46

               
               
               Conread position:226-451
               
               
               Cow position:chr13:32535490-32535714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:229-476
               
               
               Cow position:chr13:53788271-53788025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):190, 42

               
               
               Conread position:230-420
               
               
               Cow position:chr13:32657215-32657404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):83, 165

               
               
               Conread position:230-447
               
               
               Cow position:chr13:24280095-24280299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):191, 38

               
               
               Conread position:239-371
               
               
               Cow position:chr13:58615035-58615166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr13:35719290-35719083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:240-406
               
               
               Cow position:chr13:14099264-14099103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:241-449
               
               
               Cow position:chr13:49847775-49847978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:243-456
               
               
               Cow position:chr13:46430452-46430242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):149, 28

               
               
               Conread position:246-451
               
               
               Cow position:chr13:3016319-3016123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:249-445
               
               
               Cow position:chr13:38898382-38898192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):173, 22

               
               
               Conread position:255-451
               
               
               Cow position:chr13:11643803-11643997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:260-451
               
               
               Cow position:chr13:51940602-51940792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:260-451
               
               
               Cow position:chr13:62007973-62008168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:262-468
               
               
               Cow position:chr13:54080944-54080740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):159, 9

               
               
               Conread position:265-451
               
               
               Cow position:chr13:12547036-12546855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:265-451
               
               
               Cow position:chr13:56034987-56034803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:269-451
               
               
               Cow position:chr13:18350712-18350896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:271-451
               
               
               Cow position:chr13:32657922-32657742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):148, 123

               
               
               Conread position:277-456
               
               
               Cow position:chr13:27314019-27314196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):114, 120

               
               
               Conread position:290-451
               
               
               Cow position:chr13:8524721-8524560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:291-451
               
               
               Cow position:chr13:33631026-33631183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:295-451
               
               
               Cow position:chr13:29773659-29773503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):132, 114

               
               
               Conread position:324-451
               
               
               Cow position:chr13:60487529-60487405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:191-450
               
               
               Cow position:chr14:45849361-45849108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:194-451
               
               
               Cow position:chr14:11615362-11615105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):223, 82

               
               
               Conread position:196-407
               
               
               Cow position:chr14:7648158-7647948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:197-437
               
               
               Cow position:chr14:10692398-10692167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):208, 21

               
               
               Conread position:197-451
               
               
               Cow position:chr14:37884537-37884300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:198-378
               
               
               Cow position:chr14:9065757-9065934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr14:7813703-7813456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr14:47604431-47604184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):221, 22

               
               
               Conread position:198-452
               
               
               Cow position:chr14:2189499-2189748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:198-456
               
               
               Cow position:chr14:26108497-26108753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 51

               
               
               Conread position:198-468
               
               
               Cow position:chr14:12954530-12954251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 220

               
               
               Conread position:199-380
               
               
               Cow position:chr14:26153404-26153226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):165, 72

               
               
               Conread position:199-389
               
               
               Cow position:chr14:41531798-41531612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-445
               
               
               Cow position:chr14:8488061-8488293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:199-445
               
               
               Cow position:chr14:25639907-25639669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:199-451
               
               
               Cow position:chr14:20865444-20865206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 65

               
               
               Conread position:199-451
               
               
               Cow position:chr14:39058441-39058691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:199-452
               
               
               Cow position:chr14:26493737-26493991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):221, 56

               
               
               Conread position:199-455
               
               
               Cow position:chr14:44861367-44861119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):208, 72

               
               
               Conread position:199-458
               
               
               Cow position:chr14:30179665-30179393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:199-468
               
               
               Cow position:chr14:21691411-21691144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:200-371
               
               
               Cow position:chr14:20795643-20795807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-373
               
               
               Cow position:chr14:26805186-26805014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 60

               
               
               Conread position:200-378
               
               
               Cow position:chr14:36081049-36080877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-380
               
               
               Cow position:chr14:44031900-44032079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-398
               
               
               Cow position:chr14:47519886-47519691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-404
               
               
               Cow position:chr14:19023031-19022831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-420
               
               
               Cow position:chr14:28605098-28605315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:200-428
               
               
               Cow position:chr14:6441773-6442001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:200-445
               
               
               Cow position:chr14:33553061-33553293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:200-446
               
               
               Cow position:chr14:38355055-38355294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):219, 51

               
               
               Conread position:200-450
               
               
               Cow position:chr14:15997905-15997650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 206

               
               
               Conread position:200-450
               
               
               Cow position:chr14:35700294-35700538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr14:21017982-21018225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):219, 7

               
               
               Conread position:200-451
               
               
               Cow position:chr14:25386020-25385773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:200-451
               
               
               Cow position:chr14:37679137-37678889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 56

               
               
               Conread position:200-456
               
               
               Cow position:chr14:37333566-37333808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:201-445
               
               
               Cow position:chr14:14182199-14182455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:201-450
               
               
               Cow position:chr14:13809802-13810049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 174

               
               
               Conread position:201-451
               
               
               Cow position:chr14:23107186-23107440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:201-455
               
               
               Cow position:chr14:18979326-18979083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):200, 48

               
               
               Conread position:203-451
               
               
               Cow position:chr14:6789254-6789497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):202, 65

               
               
               Conread position:204-387
               
               
               Cow position:chr14:20701947-20701769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:204-449
               
               
               Cow position:chr14:43031666-43031910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):215, 66

               
               
               Conread position:205-446
               
               
               Cow position:chr14:12559606-12559373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:210-350
               
               
               Cow position:chr14:20284029-20284168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:210-451
               
               
               Cow position:chr14:22459980-22459755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:215-446
               
               
               Cow position:chr14:20045432-20045660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):200, 26

               
               
               Conread position:224-420
               
               
               Cow position:chr14:15990114-15990298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr14:47027482-47027256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):183, 45

               
               
               Conread position:225-410
               
               
               Cow position:chr14:47138897-47138717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:239-448
               
               
               Cow position:chr14:26448664-26448859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):180, 29

               
               
               Conread position:240-439
               
               
               Cow position:chr14:21084246-21084444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):150, 31

               
               
               Conread position:241-451
               
               
               Cow position:chr14:42419365-42419161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:243-443
               
               
               Cow position:chr14:44595215-44595020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:243-451
               
               
               Cow position:chr14:47551366-47551164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:248-446
               
               
               Cow position:chr14:20435305-20435503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):173, 22

               
               
               Conread position:249-482
               
               
               Cow position:chr14:20429495-20429727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):170, 22

               
               
               Conread position:250-445
               
               
               Cow position:chr14:9837978-9837779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:255-451
               
               
               Cow position:chr14:7582528-7582339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):167, 13

               
               
               Conread position:255-451
               
               
               Cow position:chr14:23008102-23008290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):164, 16

               
               
               Conread position:255-451
               
               
               Cow position:chr14:31784890-31785080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):166, 7

               
               
               Conread position:260-451
               
               
               Cow position:chr14:19863511-19863320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:269-451
               
               
               Cow position:chr14:25378562-25378382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:271-448
               
               
               Cow position:chr14:803621-803797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:271-455
               
               
               Cow position:chr14:19618815-19618634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:280-437
               
               
               Cow position:chr14:12484619-12484462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):141, 37

               
               
               Conread position:349-451
               
               
               Cow position:chr14:21273830-21273933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:190-456
               
               
               Cow position:chr15:51307786-51307515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:193-467
               
               
               Cow position:chr15:31042769-31043046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:195-448
               
               
               Cow position:chr15:27863419-27863168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):227, 76

               
               
               Conread position:196-419
               
               
               Cow position:chr15:25688874-25689098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):186, 39

               
               
               Conread position:196-438
               
               
               Cow position:chr15:42195353-42195118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):226, 33

               
               
               Conread position:196-443
               
               
               Cow position:chr15:24864355-24864117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):223, 36

               
               
               Conread position:196-451
               
               
               Cow position:chr15:15214925-15215179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):225, 75

               
               
               Conread position:197-379
               
               
               Cow position:chr15:19323232-19323408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):149, 74

               
               
               Conread position:197-406
               
               
               Cow position:chr15:20777927-20778133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:197-419
               
               
               Cow position:chr15:26934040-26933821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr15:4508060-4508308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:197-451
               
               
               Cow position:chr15:27247415-27247661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):222, 123

               
               
               Conread position:197-451
               
               
               Cow position:chr15:43776262-43776509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:198-388
               
               
               Cow position:chr15:14020389-14020584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:198-415
               
               
               Cow position:chr15:23109373-23109159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:198-445
               
               
               Cow position:chr15:8230652-8230410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):191, 31

               
               
               Conread position:198-449
               
               
               Cow position:chr15:37918556-37918799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):220, 76

               
               
               Conread position:198-451
               
               
               Cow position:chr15:24411331-24411574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr15:39894508-39894747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):220, 32

               
               
               Conread position:198-456
               
               
               Cow position:chr15:22886468-22886714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):220, 73

               
               
               Conread position:199-345
               
               
               Cow position:chr15:2117796-2117939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:199-417
               
               
               Cow position:chr15:30958299-30958092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:199-418
               
               
               Cow position:chr15:23992761-23992973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:199-420
               
               
               Cow position:chr15:34255807-34255599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:199-438
               
               
               Cow position:chr15:8021967-8022198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):221, 33

               
               
               Conread position:199-447
               
               
               Cow position:chr15:43611995-43612233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr15:12036727-12036971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:199-451
               
               
               Cow position:chr15:14758338-14758093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:199-451
               
               
               Cow position:chr15:34037275-34037036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 30

               
               
               Conread position:199-454
               
               
               Cow position:chr15:450139-449896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:199-455
               
               
               Cow position:chr15:37931842-37931598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:200-369
               
               
               Cow position:chr15:39916604-39916769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-438
               
               
               Cow position:chr15:19725797-19725575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:200-448
               
               
               Cow position:chr15:38827421-38827168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 217

               
               
               Conread position:200-451
               
               
               Cow position:chr15:12163607-12163359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr15:12170156-12170406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr15:20482934-20482686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 7

               
               
               Conread position:200-451
               
               
               Cow position:chr15:21836604-21836841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):219, 11

               
               
               Conread position:200-451
               
               
               Cow position:chr15:24977261-24977018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):222, 60

               
               
               Conread position:200-455
               
               
               Cow position:chr15:24284897-24285144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):200, 50

               
               
               Conread position:200-456
               
               
               Cow position:chr15:44252278-44252528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:200-488
               
               
               Cow position:chr15:33624865-33625151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:201-389
               
               
               Cow position:chr15:10569192-10569010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:201-426
               
               
               Cow position:chr15:20370811-20370593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:201-441
               
               
               Cow position:chr15:50177022-50177262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):225, 70

               
               
               Conread position:201-449
               
               
               Cow position:chr15:43130237-43130473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):219, 62

               
               
               Conread position:201-451
               
               
               Cow position:chr15:9971065-9970816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:201-451
               
               
               Cow position:chr15:26573293-26573537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:201-451
               
               
               Cow position:chr15:28236971-28236734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:202-424
               
               
               Cow position:chr15:17788025-17788241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):213, 60

               
               
               Conread position:202-451
               
               
               Cow position:chr15:6749931-6749689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):217, 67

               
               
               Conread position:202-455
               
               
               Cow position:chr15:35967569-35967326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:203-391
               
               
               Cow position:chr15:1017833-1017645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:204-454
               
               
               Cow position:chr15:3571700-3571944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):215, 16

               
               
               Conread position:204-467
               
               
               Cow position:chr15:47821295-47821552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:208-451
               
               
               Cow position:chr15:31617086-31616844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):211, 64

               
               
               Conread position:209-407
               
               
               Cow position:chr15:10303143-10303339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:215-429
               
               
               Cow position:chr15:9494363-9494156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):203, 5

               
               
               Conread position:222-445
               
               
               Cow position:chr15:48486571-48486789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):200, 48

               
               
               Conread position:222-452
               
               
               Cow position:chr15:17213393-17213611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr15:7962018-7962240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):223, 46

               
               
               Conread position:224-451
               
               
               Cow position:chr15:31545412-31545193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:224-455
               
               
               Cow position:chr15:53045941-53045714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:225-448
               
               
               Cow position:chr15:6491655-6491434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):194, 46

               
               
               Conread position:225-450
               
               
               Cow position:chr15:19280155-19279930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:227-450
               
               
               Cow position:chr15:11957477-11957699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):5, 46

               
               
               Conread position:232-451
               
               
               Cow position:chr15:9000903-9001112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):189, 27

               
               
               Conread position:239-371
               
               
               Cow position:chr15:31502935-31502804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-447
               
               
               Cow position:chr15:40498342-40498135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):182, 31

               
               
               Conread position:239-451
               
               
               Cow position:chr15:26421647-26421440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):180, 80

               
               
               Conread position:241-387
               
               
               Cow position:chr15:4216185-4216049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr15:38322789-38322999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:248-449
               
               
               Cow position:chr15:40117488-40117289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:250-387
               
               
               Cow position:chr15:17911104-17911240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:252-451
               
               
               Cow position:chr15:36839209-36839014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:253-432
               
               
               Cow position:chr15:26673616-26673443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):167, 18

               
               
               Conread position:256-451
               
               
               Cow position:chr15:1830531-1830720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:258-445
               
               
               Cow position:chr15:30934573-30934398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:259-420
               
               
               Cow position:chr15:46005677-46005523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:261-447
               
               
               Cow position:chr15:43626441-43626623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:261-451
               
               
               Cow position:chr15:14176528-14176340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:261-451
               
               
               Cow position:chr15:35441107-35440916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:262-456
               
               
               Cow position:chr15:2668879-2669070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):159, 41

               
               
               Conread position:263-447
               
               
               Cow position:chr15:10088294-10088473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:264-451
               
               
               Cow position:chr15:37644965-37645147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:264-455
               
               
               Cow position:chr15:23957689-23957866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:269-451
               
               
               Cow position:chr15:43248797-43248612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:270-449
               
               
               Cow position:chr15:1857705-1857884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:276-451
               
               
               Cow position:chr15:16585499-16585668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):146, 45

               
               
               Conread position:286-451
               
               
               Cow position:chr15:13387075-13387239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:294-447
               
               
               Cow position:chr15:27732417-27732569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:302-447
               
               
               Cow position:chr15:39417935-39418078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:311-451
               
               
               Cow position:chr15:9928381-9928519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 89

               
               
               Conread position:321-451
               
               
               Cow position:chr15:10815156-10815029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:177-447
               
               
               Cow position:chr16:27723431-27723146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:182-373
               
               
               Cow position:chr16:56283140-56282953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:184-445
               
               
               Cow position:chr16:27014094-27013829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 65

               
               
               Conread position:187-419
               
               
               Cow position:chr16:47519041-47518803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:190-456
               
               
               Cow position:chr16:23025521-23025270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):228, 30

               
               
               Conread position:192-451
               
               
               Cow position:chr16:36930133-36930390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):218, 79

               
               
               Conread position:193-333
               
               
               Cow position:chr16:10331804-10331666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:195-377
               
               
               Cow position:chr16:3566344-3566171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:195-410
               
               
               Cow position:chr16:2618805-2619010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:195-451
               
               
               Cow position:chr16:41689873-41689626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 68

               
               
               Conread position:195-451
               
               
               Cow position:chr16:54515901-54515654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:196-378
               
               
               Cow position:chr16:30930060-30929882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:196-450
               
               
               Cow position:chr16:26372763-26373018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 71

               
               
               Conread position:196-451
               
               
               Cow position:chr16:10857442-10857694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:196-451
               
               
               Cow position:chr16:18557082-18557334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):131, 73

               
               
               Conread position:196-451
               
               
               Cow position:chr16:38621136-38620887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:196-451
               
               
               Cow position:chr16:51069734-51069989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 56

               
               
               Conread position:196-455
               
               
               Cow position:chr16:11008528-11008269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:197-341
               
               
               Cow position:chr16:29095039-29094895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:197-384
               
               
               Cow position:chr16:31490495-31490315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:197-402
               
               
               Cow position:chr16:49321135-49320942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:197-424
               
               
               Cow position:chr16:228317-228541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):225, 54

               
               
               Conread position:198-352
               
               
               Cow position:chr16:20664467-20664317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:198-378
               
               
               Cow position:chr16:50114367-50114187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:198-387
               
               
               Cow position:chr16:18692969-18693158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 75

               
               
               Conread position:198-451
               
               
               Cow position:chr16:11085202-11085453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:198-451
               
               
               Cow position:chr16:18427359-18427115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):221, 34

               
               
               Conread position:198-455
               
               
               Cow position:chr16:48493360-48493104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:199-338
               
               
               Cow position:chr16:55070341-55070480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 73

               
               
               Conread position:199-342
               
               
               Cow position:chr16:11772071-11772212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-345
               
               
               Cow position:chr16:10406401-10406547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-440
               
               
               Cow position:chr16:29655511-29655257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:199-450
               
               
               Cow position:chr16:11662211-11661965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr16:50931336-50931587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:199-455
               
               
               Cow position:chr16:25839808-25839544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 211

               
               
               Conread position:200-409
               
               
               Cow position:chr16:16055884-16056089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-414
               
               
               Cow position:chr16:22808378-22808596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:200-438
               
               
               Cow position:chr16:30639502-30639278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:200-438
               
               
               Cow position:chr16:33121781-33121559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:200-441
               
               
               Cow position:chr16:51652844-51652614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:200-444
               
               
               Cow position:chr16:15809155-15808911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):167, 71

               
               
               Conread position:200-445
               
               
               Cow position:chr16:19002914-19003154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:200-446
               
               
               Cow position:chr16:8315016-8315256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-448
               
               
               Cow position:chr16:13660057-13660302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr16:42340373-42340125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr16:52274939-52275201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 204

               
               
               Conread position:200-451
               
               
               Cow position:chr16:52577635-52577384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr16:53267900-53267653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):197, 49

               
               
               Conread position:200-451
               
               
               Cow position:chr16:56445245-56445484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):220, 35

               
               
               Conread position:200-454
               
               
               Cow position:chr16:14974372-14974608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:200-456
               
               
               Cow position:chr16:45693320-45693071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:200-456
               
               
               Cow position:chr16:48385221-48385476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:201-350
               
               
               Cow position:chr16:47963468-47963320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:201-424
               
               
               Cow position:chr16:44540-44326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):162, 68

               
               
               Conread position:201-441
               
               
               Cow position:chr16:36120801-36121040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 94

               
               
               Conread position:201-442
               
               
               Cow position:chr16:16546244-16546011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):197, 26

               
               
               Conread position:201-447
               
               
               Cow position:chr16:44580900-44581141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 21

               
               
               Conread position:201-451
               
               
               Cow position:chr16:40333140-40333397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:201-451
               
               
               Cow position:chr16:49511760-49511508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:202-451
               
               
               Cow position:chr16:42312559-42312315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):217, 60

               
               
               Conread position:203-451
               
               
               Cow position:chr16:26155968-26156207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):215, 68

               
               
               Conread position:204-447
               
               
               Cow position:chr16:14754136-14754389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:204-451
               
               
               Cow position:chr16:10148459-10148210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:208-379
               
               
               Cow position:chr16:5580484-5580314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:208-441
               
               
               Cow position:chr16:28827008-28827239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):211, 64

               
               
               Conread position:208-447
               
               
               Cow position:chr16:43082072-43082301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):214, 24

               
               
               Conread position:209-471
               
               
               Cow position:chr16:46627679-46627929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):213, 72

               
               
               Conread position:210-451
               
               
               Cow position:chr16:12072802-12072570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):213, 64

               
               
               Conread position:219-370
               
               
               Cow position:chr16:23978275-23978424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:223-451
               
               
               Cow position:chr16:4499578-4499365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):196, 28

               
               
               Conread position:224-448
               
               
               Cow position:chr16:15938378-15938595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):197, 47

               
               
               Conread position:224-451
               
               
               Cow position:chr16:23066808-23066590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):197, 46

               
               
               Conread position:224-451
               
               
               Cow position:chr16:31419600-31419374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):198, 50

               
               
               Conread position:224-454
               
               
               Cow position:chr16:44722882-44723102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:225-384
               
               
               Cow position:chr16:5511959-5511802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:225-406
               
               
               Cow position:chr16:47909190-47909370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:227-320
               
               
               Cow position:chr16:23065924-23066016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:227-415
               
               
               Cow position:chr16:15806102-15805919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:230-409
               
               
               Cow position:chr16:23163428-23163605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-451
               
               
               Cow position:chr16:21462171-21461959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:230-454
               
               
               Cow position:chr16:37719306-37719082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:238-340
               
               
               Cow position:chr16:55922189-55922088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-451
               
               
               Cow position:chr16:10303612-10303818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr16:47368896-47368689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):167, 32

               
               
               Conread position:240-454
               
               
               Cow position:chr16:689841-689630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:242-449
               
               
               Cow position:chr16:13181874-13181669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:243-444
               
               
               Cow position:chr16:28454158-28454354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:243-451
               
               
               Cow position:chr16:52222197-52222398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):176, 19

               
               
               Conread position:243-454
               
               
               Cow position:chr16:9445094-9444886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:243-456
               
               
               Cow position:chr16:41711806-41711606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:244-449
               
               
               Cow position:chr16:44898622-44898819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):175, 27

               
               
               Conread position:246-455
               
               
               Cow position:chr16:11957446-11957658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:253-431
               
               
               Cow position:chr16:56104789-56104964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):167, 18

               
               
               Conread position:253-449
               
               
               Cow position:chr16:42257570-42257381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:257-450
               
               
               Cow position:chr16:4059476-4059285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 14

               
               
               Conread position:260-451
               
               
               Cow position:chr16:7550086-7549896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):165, 57

               
               
               Conread position:260-451
               
               
               Cow position:chr16:13195220-13195412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:260-451
               
               
               Cow position:chr16:15960170-15960362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:260-451
               
               
               Cow position:chr16:30358943-30359131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:261-451
               
               
               Cow position:chr16:4910406-4910597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:261-455
               
               
               Cow position:chr16:42242001-42242190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:263-445
               
               
               Cow position:chr16:4979918-4979735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:263-451
               
               
               Cow position:chr16:13969251-13969442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:270-447
               
               
               Cow position:chr16:22804489-22804665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:271-456
               
               
               Cow position:chr16:27160756-27160941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:273-455
               
               
               Cow position:chr16:13611348-13611528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:275-451
               
               
               Cow position:chr16:23738285-23738109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:293-494
               
               
               Cow position:chr16:37278009-37277814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:303-451
               
               
               Cow position:chr16:41763248-41763101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:326-456
               
               
               Cow position:chr16:41608668-41608537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:330-455
               
               
               Cow position:chr16:13792609-13792736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:178-449
               
               
               Cow position:chr17:24880979-24880713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 91

               
               
               Conread position:187-451
               
               
               Cow position:chr17:37138983-37138734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):232, 31

               
               
               Conread position:187-455
               
               
               Cow position:chr17:37778405-37778653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:189-451
               
               
               Cow position:chr17:5787609-5787865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:190-399
               
               
               Cow position:chr17:34870310-34870100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:190-451
               
               
               Cow position:chr17:11344432-11344187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):233, 52

               
               
               Conread position:193-451
               
               
               Cow position:chr17:11296882-11296610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:195-437
               
               
               Cow position:chr17:23147640-23147406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:195-445
               
               
               Cow position:chr17:28360050-28359816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):227, 29

               
               
               Conread position:196-451
               
               
               Cow position:chr17:10271704-10271466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:197-387
               
               
               Cow position:chr17:10769290-10769479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:197-409
               
               
               Cow position:chr17:36173747-36173962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:197-420
               
               
               Cow position:chr17:12091594-12091822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:197-451
               
               
               Cow position:chr17:8279495-8279738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):222, 23

               
               
               Conread position:198-367
               
               
               Cow position:chr17:33925798-33925966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:198-399
               
               
               Cow position:chr17:10314640-10314441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):162, 71

               
               
               Conread position:198-410
               
               
               Cow position:chr17:27505315-27505106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:198-424
               
               
               Cow position:chr17:13229596-13229373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:198-451
               
               
               Cow position:chr17:24580077-24580326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:198-451
               
               
               Cow position:chr17:27819510-27819273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:198-451
               
               
               Cow position:chr17:32457352-32457598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):223, 34

               
               
               Conread position:198-456
               
               
               Cow position:chr17:37414684-37414930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):224, 24

               
               
               Conread position:199-402
               
               
               Cow position:chr17:11655596-11655393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):187, 71

               
               
               Conread position:199-409
               
               
               Cow position:chr17:3619869-3620075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:199-410
               
               
               Cow position:chr17:35107416-35107209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:199-430
               
               
               Cow position:chr17:5166860-5167074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):221, 65

               
               
               Conread position:199-437
               
               
               Cow position:chr17:36818254-36818019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):193, 64

               
               
               Conread position:199-449
               
               
               Cow position:chr17:18173613-18173848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr17:26162208-26162456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:199-455
               
               
               Cow position:chr17:33386639-33386380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 63

               
               
               Conread position:199-456
               
               
               Cow position:chr17:7614159-7614417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:199-523
               
               
               Cow position:chr17:2271214-2270894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):220, 16

               
               
               Conread position:200-367
               
               
               Cow position:chr17:7163676-7163843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:200-382
               
               
               Cow position:chr17:19239663-19239842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-385
               
               
               Cow position:chr17:12342266-12342447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):87, 59

               
               
               Conread position:200-404
               
               
               Cow position:chr17:14278280-14278077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-410
               
               
               Cow position:chr17:15634669-15634872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-432
               
               
               Cow position:chr17:31798232-31798462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:200-439
               
               
               Cow position:chr17:38139725-38139488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):208, 46

               
               
               Conread position:200-440
               
               
               Cow position:chr17:26614517-26614751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:200-441
               
               
               Cow position:chr17:35387784-35388024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):220, 24

               
               
               Conread position:200-443
               
               
               Cow position:chr17:9748967-9748723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:200-450
               
               
               Cow position:chr17:10633831-10634089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:200-451
               
               
               Cow position:chr17:31465024-31465281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:200-455
               
               
               Cow position:chr17:27257001-27257265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr17:143963-144213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):220, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr17:10886195-10886441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):225, 28

               
               
               Conread position:201-447
               
               
               Cow position:chr17:1469601-1469350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:201-447
               
               
               Cow position:chr17:7205635-7205392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:201-450
               
               
               Cow position:chr17:30236406-30236181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:201-451
               
               
               Cow position:chr17:23803671-23803429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:201-451
               
               
               Cow position:chr17:36400313-36400068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):208, 19

               
               
               Conread position:201-451
               
               
               Cow position:chr17:39016313-39016065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):208, 17

               
               
               Conread position:201-456
               
               
               Cow position:chr17:13715819-13716073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):197, 48

               
               
               Conread position:204-417
               
               
               Cow position:chr17:10221062-10220854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:206-449
               
               
               Cow position:chr17:20216378-20216138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):212, 65

               
               
               Conread position:206-451
               
               
               Cow position:chr17:36216975-36217211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):216, 54

               
               
               Conread position:207-388
               
               
               Cow position:chr17:5381161-5380989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:213-451
               
               
               Cow position:chr17:39012922-39012696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:215-411
               
               
               Cow position:chr17:728152-728345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:224-366
               
               
               Cow position:chr17:8215384-8215245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr17:12768614-12768758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:224-416
               
               
               Cow position:chr17:33913381-33913573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):164, 47

               
               
               Conread position:224-451
               
               
               Cow position:chr17:4085948-4085726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:230-449
               
               
               Cow position:chr17:19891811-19891594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:236-451
               
               
               Cow position:chr17:1455761-1455969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:239-456
               
               
               Cow position:chr17:8926039-8926250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):176, 35

               
               
               Conread position:243-407
               
               
               Cow position:chr17:7519565-7519402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:246-451
               
               
               Cow position:chr17:11171958-11171763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):175, 25

               
               
               Conread position:247-451
               
               
               Cow position:chr17:13600810-13601006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:248-451
               
               
               Cow position:chr17:4891193-4891392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:252-454
               
               
               Cow position:chr17:25708121-25707924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):170, 19

               
               
               Conread position:254-449
               
               
               Cow position:chr17:34864731-34864546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:255-452
               
               
               Cow position:chr17:8293617-8293814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:260-451
               
               
               Cow position:chr17:17410453-17410261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:260-457
               
               
               Cow position:chr17:28814334-28814535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:261-439
               
               
               Cow position:chr17:34836330-34836152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:262-451
               
               
               Cow position:chr17:10307878-10308057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:264-451
               
               
               Cow position:chr17:5296703-5296887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):142, 57

               
               
               Conread position:264-451
               
               
               Cow position:chr17:5985918-5986102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):142, 57

               
               
               Conread position:270-451
               
               
               Cow position:chr17:31856820-31856641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:270-467
               
               
               Cow position:chr17:16371406-16371212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:271-451
               
               
               Cow position:chr17:38263342-38263523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:276-403
               
               
               Cow position:chr17:43640956-43641083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-454
               
               
               Cow position:chr18:51643200-51643474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 110

               
               
               Conread position:195-446
               
               
               Cow position:chr18:5756127-5755883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):225, 76

               
               
               Conread position:196-335
               
               
               Cow position:chr18:14520179-14520046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:196-397
               
               
               Cow position:chr18:48458817-48458623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:196-445
               
               
               Cow position:chr18:6158056-6157817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):220, 24

               
               
               Conread position:196-451
               
               
               Cow position:chr18:32909189-32908945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):180, 13

               
               
               Conread position:196-451
               
               
               Cow position:chr18:40893421-40893172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:196-454
               
               
               Cow position:chr18:30586070-30586329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:197-452
               
               
               Cow position:chr18:51486321-51486568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):223, 35

               
               
               Conread position:197-456
               
               
               Cow position:chr18:16841905-16842171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr18:45961127-45961372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:198-455
               
               
               Cow position:chr18:51298625-51298372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):214, 71

               
               
               Conread position:199-306
               
               
               Cow position:chr18:4890897-4890791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-375
               
               
               Cow position:chr18:48036962-48036789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:199-390
               
               
               Cow position:chr18:6075245-6075440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:199-398
               
               
               Cow position:chr18:43554937-43555127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:199-404
               
               
               Cow position:chr18:26373065-26372862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-406
               
               
               Cow position:chr18:35767313-35767114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:199-420
               
               
               Cow position:chr18:43712191-43711975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):150, 72

               
               
               Conread position:199-431
               
               
               Cow position:chr18:46873724-46873946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):218, 22

               
               
               Conread position:199-438
               
               
               Cow position:chr18:51271600-51271845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):100, 71

               
               
               Conread position:199-443
               
               
               Cow position:chr18:38126305-38126546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 63

               
               
               Conread position:199-446
               
               
               Cow position:chr18:55696883-55697120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):220, 35

               
               
               Conread position:199-449
               
               
               Cow position:chr18:10101630-10101389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):221, 19

               
               
               Conread position:199-451
               
               
               Cow position:chr18:15831458-15831696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):221, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr18:29796285-29796528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr18:34324805-34325056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:199-456
               
               
               Cow position:chr18:23714726-23714995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-468
               
               
               Cow position:chr18:26334661-26334933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:200-349
               
               
               Cow position:chr18:51241169-51241022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:200-403
               
               
               Cow position:chr18:4578344-4578543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:200-404
               
               
               Cow position:chr18:44493342-44493541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):196, 69

               
               
               Conread position:200-406
               
               
               Cow position:chr18:2777602-2777814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:200-411
               
               
               Cow position:chr18:33842941-33843151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:200-423
               
               
               Cow position:chr18:50700828-50700610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-437
               
               
               Cow position:chr18:2438623-2438855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):220, 20

               
               
               Conread position:200-440
               
               
               Cow position:chr18:1190578-1190813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):209, 71

               
               
               Conread position:200-441
               
               
               Cow position:chr18:47525554-47525308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:200-449
               
               
               Cow position:chr18:25970503-25970736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):222, 29

               
               
               Conread position:200-451
               
               
               Cow position:chr18:19849609-19849859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 163

               
               
               Conread position:200-452
               
               
               Cow position:chr18:40202667-40202912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:200-457
               
               
               Cow position:chr18:16448682-16448446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):218, 20

               
               
               Conread position:200-459
               
               
               Cow position:chr18:20126964-20127218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:201-449
               
               
               Cow position:chr18:51587405-51587645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):219, 64

               
               
               Conread position:201-451
               
               
               Cow position:chr18:248672-248917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:201-451
               
               
               Cow position:chr18:19193211-19193469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 219

               
               
               Conread position:201-454
               
               
               Cow position:chr18:2146431-2146694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr18:33300045-33299798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:205-451
               
               
               Cow position:chr18:37331390-37331630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:210-454
               
               
               Cow position:chr18:42061209-42060969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):209, 61

               
               
               Conread position:212-432
               
               
               Cow position:chr18:43113817-43114029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):206, 59

               
               
               Conread position:213-389
               
               
               Cow position:chr18:26842967-26843142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 58

               
               
               Conread position:213-456
               
               
               Cow position:chr18:22143382-22143632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 203

               
               
               Conread position:215-451
               
               
               Cow position:chr18:21706055-21706282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):204, 56

               
               
               Conread position:224-419
               
               
               Cow position:chr18:44400566-44400377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:224-445
               
               
               Cow position:chr18:381054-380827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:224-449
               
               
               Cow position:chr18:22411492-22411716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):179, 44

               
               
               Conread position:224-450
               
               
               Cow position:chr18:24855724-24855948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):194, 47

               
               
               Conread position:224-451
               
               
               Cow position:chr18:16726768-16726545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 46

               
               
               Conread position:225-424
               
               
               Cow position:chr18:16298224-16298026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):157, 45

               
               
               Conread position:227-447
               
               
               Cow position:chr18:15689403-15689185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):196, 43

               
               
               Conread position:230-439
               
               
               Cow position:chr18:56302008-56301798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:232-451
               
               
               Cow position:chr18:38344916-38344702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:237-450
               
               
               Cow position:chr18:20422872-20423077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:239-410
               
               
               Cow position:chr18:33275394-33275232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:239-449
               
               
               Cow position:chr18:23425023-23424818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):145, 31

               
               
               Conread position:239-451
               
               
               Cow position:chr18:32773983-32773773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:242-445
               
               
               Cow position:chr18:16134212-16134416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:243-451
               
               
               Cow position:chr18:25002789-25002983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:244-440
               
               
               Cow position:chr18:716469-716284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:244-451
               
               
               Cow position:chr18:1495403-1495201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:249-454
               
               
               Cow position:chr18:46320882-46321085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:251-451
               
               
               Cow position:chr18:35360060-35359867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:258-407
               
               
               Cow position:chr18:21575072-21574924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:264-451
               
               
               Cow position:chr18:35797699-35797521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):154, 7

               
               
               Conread position:271-441
               
               
               Cow position:chr18:5078700-5078869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:271-450
               
               
               Cow position:chr18:213463-213642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:271-451
               
               
               Cow position:chr18:11377438-11377261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:271-452
               
               
               Cow position:chr18:21681899-21682086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:279-451
               
               
               Cow position:chr18:21176253-21176084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):140, 68

               
               
               Conread position:286-451
               
               
               Cow position:chr18:38793828-38793988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:289-456
               
               
               Cow position:chr18:51500019-51500182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:291-450
               
               
               Cow position:chr18:55639305-55639455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:294-469
               
               
               Cow position:chr18:51002488-51002653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:183-451
               
               
               Cow position:chr19:1712958-1713224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):162, 86

               
               
               Conread position:185-345
               
               
               Cow position:chr19:22014030-22013868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 85

               
               
               Conread position:186-445
               
               
               Cow position:chr19:7030097-7029840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):235, 65

               
               
               Conread position:186-451
               
               
               Cow position:chr19:21284901-21285156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):113, 85

               
               
               Conread position:192-371
               
               
               Cow position:chr19:38025867-38025689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:194-441
               
               
               Cow position:chr19:20291921-20292165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):211, 68

               
               
               Conread position:195-451
               
               
               Cow position:chr19:15937001-15936755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:196-334
               
               
               Cow position:chr19:5678924-5678787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:196-445
               
               
               Cow position:chr19:24721845-24721601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):164, 76

               
               
               Conread position:196-451
               
               
               Cow position:chr19:1153376-1153131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:196-451
               
               
               Cow position:chr19:9092642-9092881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:196-451
               
               
               Cow position:chr19:35540471-35540215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:197-334
               
               
               Cow position:chr19:5678713-5678577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:197-447
               
               
               Cow position:chr19:36245323-36245568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):75, 149

               
               
               Conread position:197-454
               
               
               Cow position:chr19:27346495-27346735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):225, 16

               
               
               Conread position:197-456
               
               
               Cow position:chr19:31984481-31984738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):152, 21

               
               
               Conread position:198-445
               
               
               Cow position:chr19:4824814-4825052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:198-449
               
               
               Cow position:chr19:905134-904898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:198-449
               
               
               Cow position:chr19:31614276-31614033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:198-451
               
               
               Cow position:chr19:28842192-28842452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):200, 73

               
               
               Conread position:198-455
               
               
               Cow position:chr19:750376-750124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 204

               
               
               Conread position:198-455
               
               
               Cow position:chr19:32214965-32214713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:198-456
               
               
               Cow position:chr19:39250424-39250181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):226, 22

               
               
               Conread position:199-326
               
               
               Cow position:chr19:30652925-30653051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-342
               
               
               Cow position:chr19:36380389-36380250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:199-354
               
               
               Cow position:chr19:54817367-54817521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-378
               
               
               Cow position:chr19:47783596-47783776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:199-387
               
               
               Cow position:chr19:22932382-22932568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-391
               
               
               Cow position:chr19:26003447-26003639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:199-419
               
               
               Cow position:chr19:30935603-30935823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 68

               
               
               Conread position:199-451
               
               
               Cow position:chr19:36461361-36461613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:199-451
               
               
               Cow position:chr19:42695174-42694910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:199-451
               
               
               Cow position:chr19:56063257-56063515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:199-455
               
               
               Cow position:chr19:25271252-25271501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):222, 61

               
               
               Conread position:199-455
               
               
               Cow position:chr19:33686250-33686002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:200-354
               
               
               Cow position:chr19:50786375-50786523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-395
               
               
               Cow position:chr19:2280481-2280667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:200-410
               
               
               Cow position:chr19:5648506-5648709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:200-445
               
               
               Cow position:chr19:12040784-12040547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):218, 70

               
               
               Conread position:200-449
               
               
               Cow position:chr19:952854-952613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):218, 61

               
               
               Conread position:200-449
               
               
               Cow position:chr19:31126963-31126714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:200-450
               
               
               Cow position:chr19:36976746-36976994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr19:9387800-9387554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr19:11759063-11759330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr19:38907196-38907439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr19:40026768-40027014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):92, 59

               
               
               Conread position:200-455
               
               
               Cow position:chr19:10970924-10971181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 219

               
               
               Conread position:200-455
               
               
               Cow position:chr19:40450186-40449930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:201-372
               
               
               Cow position:chr19:39222946-39223107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:201-437
               
               
               Cow position:chr19:38871233-38870997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:201-443
               
               
               Cow position:chr19:17020444-17020205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:201-445
               
               
               Cow position:chr19:31536291-31536050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):222, 12

               
               
               Conread position:201-451
               
               
               Cow position:chr19:35345093-35344843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 70

               
               
               Conread position:202-451
               
               
               Cow position:chr19:48479138-48478897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:208-454
               
               
               Cow position:chr19:55236643-55236404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):213, 63

               
               
               Conread position:209-443
               
               
               Cow position:chr19:24689434-24689204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):206, 25

               
               
               Conread position:213-371
               
               
               Cow position:chr19:5986388-5986231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:215-456
               
               
               Cow position:chr19:19246927-19246687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:222-447
               
               
               Cow position:chr19:31827233-31827021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):198, 46

               
               
               Conread position:224-410
               
               
               Cow position:chr19:50658280-50658098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:225-456
               
               
               Cow position:chr19:7838908-7839128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):197, 16

               
               
               Conread position:230-451
               
               
               Cow position:chr19:11876565-11876786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:232-457
               
               
               Cow position:chr19:6735092-6735317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:239-451
               
               
               Cow position:chr19:3084083-3084290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:239-456
               
               
               Cow position:chr19:35064064-35064277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:241-451
               
               
               Cow position:chr19:53738458-53738254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:241-454
               
               
               Cow position:chr19:54225185-54225392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:242-364
               
               
               Cow position:chr19:46306214-46306334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:243-451
               
               
               Cow position:chr19:2821705-2821500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:247-451
               
               
               Cow position:chr19:11191502-11191698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:251-424
               
               
               Cow position:chr19:3080577-3080405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):168, 19

               
               
               Conread position:252-455
               
               
               Cow position:chr19:51800462-51800652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:253-424
               
               
               Cow position:chr19:9100260-9100089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:255-451
               
               
               Cow position:chr19:7884691-7884497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:255-451
               
               
               Cow position:chr19:19662155-19661964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:260-451
               
               
               Cow position:chr19:39254337-39254533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:260-456
               
               
               Cow position:chr19:7404269-7404465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:260-456
               
               
               Cow position:chr19:15887212-15887411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:262-449
               
               
               Cow position:chr19:25711223-25711397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:274-447
               
               
               Cow position:chr19:10207702-10207531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:279-451
               
               
               Cow position:chr19:31595389-31595218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:290-448
               
               
               Cow position:chr19:47110118-47109960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):131, 119

               
               
               Conread position:292-451
               
               
               Cow position:chr19:44490169-44490014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:296-450
               
               
               Cow position:chr19:42273779-42273927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:183-451
               
               
               Cow position:chr2:62309243-62309497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):239, 35

               
               
               Conread position:184-455
               
               
               Cow position:chr2:6444224-6443954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:186-455
               
               
               Cow position:chr2:26042048-26042315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 99

               
               
               Conread position:188-390
               
               
               Cow position:chr2:86199573-86199378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:189-365
               
               
               Cow position:chr2:45146583-45146408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 18

               
               
               Conread position:189-451
               
               
               Cow position:chr2:19328738-19328475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 66

               
               
               Conread position:189-454
               
               
               Cow position:chr2:20868096-20868348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):230, 73

               
               
               Conread position:190-441
               
               
               Cow position:chr2:64213248-64213002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):220, 78

               
               
               Conread position:190-445
               
               
               Cow position:chr2:11734711-11734453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:191-456
               
               
               Cow position:chr2:10356493-10356748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):228, 18

               
               
               Conread position:193-369
               
               
               Cow position:chr2:64973614-64973440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:193-388
               
               
               Cow position:chr2:68981825-68982019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:194-451
               
               
               Cow position:chr2:14555571-14555820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:194-451
               
               
               Cow position:chr2:32446160-32446404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:194-451
               
               
               Cow position:chr2:59380315-59380554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):225, 38

               
               
               Conread position:194-451
               
               
               Cow position:chr2:74209160-74209407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):214, 38

               
               
               Conread position:195-375
               
               
               Cow position:chr2:56884602-56884425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:195-387
               
               
               Cow position:chr2:25084868-25084680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:196-444
               
               
               Cow position:chr2:64226658-64226414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:196-451
               
               
               Cow position:chr2:31457669-31457417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:196-451
               
               
               Cow position:chr2:51638733-51638486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:197-378
               
               
               Cow position:chr2:36998315-36998136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr2:31155887-31155641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:197-451
               
               
               Cow position:chr2:42309371-42309624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:197-453
               
               
               Cow position:chr2:36866606-36866851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 64

               
               
               Conread position:198-356
               
               
               Cow position:chr2:51041434-51041592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:198-391
               
               
               Cow position:chr2:61442775-61442588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:198-404
               
               
               Cow position:chr2:62384503-62384709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):202, 72

               
               
               Conread position:198-407
               
               
               Cow position:chr2:83744877-83745070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:198-447
               
               
               Cow position:chr2:61880622-61880861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:198-449
               
               
               Cow position:chr2:34256130-34256365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):218, 29

               
               
               Conread position:198-451
               
               
               Cow position:chr2:41057347-41057584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr2:51028133-51027884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 71

               
               
               Conread position:198-452
               
               
               Cow position:chr2:29612730-29612482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:198-455
               
               
               Cow position:chr2:70664197-70663940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:198-456
               
               
               Cow position:chr2:20915817-20916065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:199-339
               
               
               Cow position:chr2:46228072-46228210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:199-389
               
               
               Cow position:chr2:72584099-72583915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-418
               
               
               Cow position:chr2:54253558-54253341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:199-425
               
               
               Cow position:chr2:73999900-73999678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):219, 64

               
               
               Conread position:199-441
               
               
               Cow position:chr2:53500849-53501096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:199-450
               
               
               Cow position:chr2:47990616-47990367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr2:7720735-7720980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):219, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr2:15250364-15250109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:199-451
               
               
               Cow position:chr2:19137694-19137963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr2:38117827-38118064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr2:39787198-39786952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr2:51799141-51799394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:199-451
               
               
               Cow position:chr2:52171428-52171187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:199-451
               
               
               Cow position:chr2:72758804-72758559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):205, 71

               
               
               Conread position:199-451
               
               
               Cow position:chr2:81348699-81348951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):86, 50

               
               
               Conread position:199-452
               
               
               Cow position:chr2:41314066-41313822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):208, 22

               
               
               Conread position:199-455
               
               
               Cow position:chr2:793830-793571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:199-455
               
               
               Cow position:chr2:7498753-7498504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-455
               
               
               Cow position:chr2:64323434-64323169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:199-456
               
               
               Cow position:chr2:46741662-46741405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:200-378
               
               
               Cow position:chr2:8245696-8245516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):76, 70

               
               
               Conread position:200-381
               
               
               Cow position:chr2:78852597-78852771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-398
               
               
               Cow position:chr2:46783693-46783497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):149, 70

               
               
               Conread position:200-406
               
               
               Cow position:chr2:50591959-50591751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:200-440
               
               
               Cow position:chr2:56752725-56752963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:200-445
               
               
               Cow position:chr2:80177402-80177653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:200-451
               
               
               Cow position:chr2:1651574-1651335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:200-451
               
               
               Cow position:chr2:6056140-6055895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):219, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr2:20250884-20250638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr2:30640383-30640118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 222

               
               
               Conread position:200-451
               
               
               Cow position:chr2:32453354-32453603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):152, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr2:43773408-43773646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-452
               
               
               Cow position:chr2:53496741-53496982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):219, 51

               
               
               Conread position:200-454
               
               
               Cow position:chr2:42925468-42925224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:200-455
               
               
               Cow position:chr2:40427620-40427868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):215, 60

               
               
               Conread position:200-456
               
               
               Cow position:chr2:13604647-13604393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):190, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr2:39855960-39855714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):219, 51

               
               
               Conread position:200-456
               
               
               Cow position:chr2:72902111-72902364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 24

               
               
               Conread position:200-505
               
               
               Cow position:chr2:18395335-18395040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:201-409
               
               
               Cow position:chr2:73027618-73027413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:201-424
               
               
               Cow position:chr2:4010274-4010069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:201-441
               
               
               Cow position:chr2:51769784-51769545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):220, 29

               
               
               Conread position:201-451
               
               
               Cow position:chr2:33659525-33659774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:201-454
               
               
               Cow position:chr2:82054666-82054917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:202-441
               
               
               Cow position:chr2:38205586-38205823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):209, 31

               
               
               Conread position:202-449
               
               
               Cow position:chr2:49480416-49480660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:202-456
               
               
               Cow position:chr2:58685557-58685308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:204-449
               
               
               Cow position:chr2:4383724-4383964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):217, 64

               
               
               Conread position:204-451
               
               
               Cow position:chr2:4071094-4070849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):174, 11

               
               
               Conread position:205-417
               
               
               Cow position:chr2:13013269-13013049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:205-451
               
               
               Cow position:chr2:39815105-39815354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:208-451
               
               
               Cow position:chr2:14099818-14099580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):212, 63

               
               
               Conread position:210-450
               
               
               Cow position:chr2:22859465-22859711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:212-451
               
               
               Cow position:chr2:33596493-33596739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):174, 8

               
               
               Conread position:213-449
               
               
               Cow position:chr2:425978-425748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:214-388
               
               
               Cow position:chr2:62464022-62464190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:217-456
               
               
               Cow position:chr2:53000667-53000434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):202, 6

               
               
               Conread position:224-439
               
               
               Cow position:chr2:29032861-29032655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):197, 46

               
               
               Conread position:224-447
               
               
               Cow position:chr2:2937711-2937502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):195, 27

               
               
               Conread position:224-451
               
               
               Cow position:chr2:304230-304455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):147, 46

               
               
               Conread position:224-451
               
               
               Cow position:chr2:18061477-18061701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):176, 27

               
               
               Conread position:224-451
               
               
               Cow position:chr2:48748572-48748798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):196, 46

               
               
               Conread position:225-455
               
               
               Cow position:chr2:29382526-29382754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 46

               
               
               Conread position:226-406
               
               
               Cow position:chr2:21955286-21955111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:226-447
               
               
               Cow position:chr2:41765639-41765423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:227-431
               
               
               Cow position:chr2:17342034-17341834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):163, 44

               
               
               Conread position:227-451
               
               
               Cow position:chr2:41461520-41461296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):185, 44

               
               
               Conread position:228-414
               
               
               Cow position:chr2:14734255-14734071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:228-447
               
               
               Cow position:chr2:77033833-77033614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:230-447
               
               
               Cow position:chr2:82311051-82311264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:232-415
               
               
               Cow position:chr2:70464577-70464401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:239-412
               
               
               Cow position:chr2:24624656-24624494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-423
               
               
               Cow position:chr2:77982009-77982186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-451
               
               
               Cow position:chr2:15162882-15162672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):180, 33

               
               
               Conread position:239-456
               
               
               Cow position:chr2:24106535-24106318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:240-451
               
               
               Cow position:chr2:50793884-50793675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:240-456
               
               
               Cow position:chr2:14749729-14749516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):180, 34

               
               
               Conread position:241-451
               
               
               Cow position:chr2:39832523-39832321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:243-451
               
               
               Cow position:chr2:6935151-6935350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):177, 28

               
               
               Conread position:245-454
               
               
               Cow position:chr2:40313497-40313295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 26

               
               
               Conread position:246-449
               
               
               Cow position:chr2:69823724-69823520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:246-451
               
               
               Cow position:chr2:14285502-14285301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:248-449
               
               
               Cow position:chr2:70579574-70579774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:249-388
               
               
               Cow position:chr2:70306271-70306134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:249-451
               
               
               Cow position:chr2:31113967-31113778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):170, 22

               
               
               Conread position:253-452
               
               
               Cow position:chr2:45726306-45726117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:254-456
               
               
               Cow position:chr2:68842817-68843016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):167, 17

               
               
               Conread position:255-451
               
               
               Cow position:chr2:47065231-47065040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:260-451
               
               
               Cow position:chr2:30351586-30351776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:269-451
               
               
               Cow position:chr2:69367015-69367198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:270-451
               
               
               Cow position:chr2:76861347-76861531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:271-451
               
               
               Cow position:chr2:39672640-39672822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 141

               
               
               Conread position:271-481
               
               
               Cow position:chr2:69419477-69419690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:276-449
               
               
               Cow position:chr2:39802208-39802380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):145, 41

               
               
               Conread position:278-447
               
               
               Cow position:chr2:2740561-2740394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:279-451
               
               
               Cow position:chr2:7947044-7947214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):140, 7

               
               
               Conread position:286-467
               
               
               Cow position:chr2:12198816-12198995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:289-488
               
               
               Cow position:chr2:68655397-68655202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:290-451
               
               
               Cow position:chr2:9325088-9324926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):120, 144

               
               
               Conread position:295-451
               
               
               Cow position:chr2:43718987-43718830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:298-448
               
               
               Cow position:chr2:62818625-62818776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:298-474
               
               
               Cow position:chr2:2382477-2382650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:300-451
               
               
               Cow position:chr2:73386767-73386918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:304-449
               
               
               Cow position:chr2:80595239-80595381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):115, 43

               
               
               Conread position:324-451
               
               
               Cow position:chr2:46175205-46175331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 77

               
               
               Conread position:183-428
               
               
               Cow position:chr20:16979986-16979741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:189-438
               
               
               Cow position:chr20:38858205-38858434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 31

               
               
               Conread position:190-406
               
               
               Cow position:chr20:35924558-35924765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:194-364
               
               
               Cow position:chr20:13617455-13617283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:196-449
               
               
               Cow position:chr20:10759251-10759501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:196-456
               
               
               Cow position:chr20:1576320-1576060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:197-409
               
               
               Cow position:chr20:17363436-17363642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:197-451
               
               
               Cow position:chr20:220831-220594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr20:24868797-24869062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:198-451
               
               
               Cow position:chr20:26749993-26750234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr20:33532530-33532278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:199-407
               
               
               Cow position:chr20:7386771-7386574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-410
               
               
               Cow position:chr20:4157636-4157434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:199-416
               
               
               Cow position:chr20:13608850-13609058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:199-417
               
               
               Cow position:chr20:4334299-4334527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:199-418
               
               
               Cow position:chr20:4933850-4934064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:199-438
               
               
               Cow position:chr20:9706698-9706931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):218, 71

               
               
               Conread position:199-448
               
               
               Cow position:chr20:8262134-8261884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):189, 33

               
               
               Conread position:199-451
               
               
               Cow position:chr20:7101006-7100749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:199-451
               
               
               Cow position:chr20:10837995-10838243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):215, 54

               
               
               Conread position:199-451
               
               
               Cow position:chr20:30855539-30855781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:199-451
               
               
               Cow position:chr20:34108328-34108084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:199-452
               
               
               Cow position:chr20:35842908-35843156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):220, 33

               
               
               Conread position:199-455
               
               
               Cow position:chr20:24643929-24644178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:200-345
               
               
               Cow position:chr20:37136306-37136162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-391
               
               
               Cow position:chr20:311541-311356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):85, 91

               
               
               Conread position:200-391
               
               
               Cow position:chr20:25146997-25146813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:200-410
               
               
               Cow position:chr20:41109878-41110084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-423
               
               
               Cow position:chr20:14513247-14513019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):158, 29

               
               
               Conread position:200-437
               
               
               Cow position:chr20:24234363-24234142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):219, 14

               
               
               Conread position:200-445
               
               
               Cow position:chr20:17670398-17670160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 17

               
               
               Conread position:200-447
               
               
               Cow position:chr20:5763075-5763320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):216, 41

               
               
               Conread position:200-451
               
               
               Cow position:chr20:19266366-19266127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr20:20359564-20359812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:200-454
               
               
               Cow position:chr20:13465725-13465479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):222, 68

               
               
               Conread position:201-451
               
               
               Cow position:chr20:14679835-14679593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):218, 67

               
               
               Conread position:201-451
               
               
               Cow position:chr20:40511535-40511786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:201-454
               
               
               Cow position:chr20:6903531-6903284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):192, 39

               
               
               Conread position:202-418
               
               
               Cow position:chr20:23163688-23163896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr20:23235248-23235008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:202-454
               
               
               Cow position:chr20:25686130-25686381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:204-386
               
               
               Cow position:chr20:2430754-2430579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:204-452
               
               
               Cow position:chr20:17397049-17397287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:205-437
               
               
               Cow position:chr20:18530649-18530419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):217, 37

               
               
               Conread position:206-407
               
               
               Cow position:chr20:15241550-15241750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:207-454
               
               
               Cow position:chr20:4204498-4204261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:208-451
               
               
               Cow position:chr20:31081251-31081013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 83

               
               
               Conread position:210-451
               
               
               Cow position:chr20:1205728-1205960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):206, 44

               
               
               Conread position:212-445
               
               
               Cow position:chr20:14540553-14540320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:214-448
               
               
               Cow position:chr20:39656448-39656225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):207, 57

               
               
               Conread position:224-449
               
               
               Cow position:chr20:15073636-15073861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:224-455
               
               
               Cow position:chr20:24850002-24849776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):151, 44

               
               
               Conread position:227-391
               
               
               Cow position:chr20:21236845-21236687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:227-451
               
               
               Cow position:chr20:6424165-6423944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:240-392
               
               
               Cow position:chr20:14471392-14471542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:240-428
               
               
               Cow position:chr20:39220537-39220723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):182, 30

               
               
               Conread position:242-451
               
               
               Cow position:chr20:42255036-42254832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):166, 21

               
               
               Conread position:246-449
               
               
               Cow position:chr20:32861827-32862024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:246-456
               
               
               Cow position:chr20:25274119-25274322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):174, 25

               
               
               Conread position:247-451
               
               
               Cow position:chr20:24834262-24834066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:255-451
               
               
               Cow position:chr20:29845216-29845022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:257-384
               
               
               Cow position:chr20:37450712-37450587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:260-454
               
               
               Cow position:chr20:9266947-9267138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:261-451
               
               
               Cow position:chr20:29805498-29805689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:262-449
               
               
               Cow position:chr20:26077241-26077055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):157, 120

               
               
               Conread position:262-456
               
               
               Cow position:chr20:19339723-19339905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):158, 9

               
               
               Conread position:263-452
               
               
               Cow position:chr20:10772363-10772175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:271-455
               
               
               Cow position:chr20:6096345-6096525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:271-455
               
               
               Cow position:chr20:12126154-12126336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:283-451
               
               
               Cow position:chr20:20471921-20471754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:284-450
               
               
               Cow position:chr20:5576912-5576746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:295-441
               
               
               Cow position:chr20:12430673-12430817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:184-451
               
               
               Cow position:chr21:32574977-32574716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:191-386
               
               
               Cow position:chr21:49353892-49353693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:191-447
               
               
               Cow position:chr21:4276354-4276599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:191-454
               
               
               Cow position:chr21:38121347-38121089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:192-378
               
               
               Cow position:chr21:23397417-23397598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:194-451
               
               
               Cow position:chr21:34564973-34565219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):227, 21

               
               
               Conread position:195-342
               
               
               Cow position:chr21:34049333-34049477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:195-403
               
               
               Cow position:chr21:13417994-13418191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:195-455
               
               
               Cow position:chr21:30848684-30848959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:195-471
               
               
               Cow position:chr21:34740090-34739815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 76

               
               
               Conread position:196-432
               
               
               Cow position:chr21:23768108-23767881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):204, 18

               
               
               Conread position:196-440
               
               
               Cow position:chr21:48290814-48291050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:196-451
               
               
               Cow position:chr21:4723725-4723471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):225, 78

               
               
               Conread position:196-456
               
               
               Cow position:chr21:23786269-23786018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):204, 18

               
               
               Conread position:197-379
               
               
               Cow position:chr21:37120969-37121149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):157, 74

               
               
               Conread position:197-415
               
               
               Cow position:chr21:38901025-38900800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:197-456
               
               
               Cow position:chr21:46551863-46552117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:198-431
               
               
               Cow position:chr21:13755023-13754797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):222, 29

               
               
               Conread position:198-437
               
               
               Cow position:chr21:17428738-17428505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:198-437
               
               
               Cow position:chr21:18941592-18941829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:198-437
               
               
               Cow position:chr21:22352995-22353228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:198-437
               
               
               Cow position:chr21:31004432-31004660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:198-438
               
               
               Cow position:chr21:6696775-6697026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):148, 72

               
               
               Conread position:198-445
               
               
               Cow position:chr21:11675811-11676053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:198-451
               
               
               Cow position:chr21:13737289-13737047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:198-451
               
               
               Cow position:chr21:21223523-21223278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:198-454
               
               
               Cow position:chr21:3254394-3254139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):220, 66

               
               
               Conread position:198-454
               
               
               Cow position:chr21:31662241-31661993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:199-369
               
               
               Cow position:chr21:26147319-26147151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-448
               
               
               Cow position:chr21:25286755-25286510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:199-451
               
               
               Cow position:chr21:8420859-8420616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr21:9353689-9353437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):138, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr21:23587132-23586873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:199-451
               
               
               Cow position:chr21:37235623-37235378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):220, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr21:45356075-45355829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:199-459
               
               
               Cow position:chr21:47715304-47715557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):162, 63

               
               
               Conread position:200-379
               
               
               Cow position:chr21:17806899-17807070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:200-418
               
               
               Cow position:chr21:7483115-7483325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 18

               
               
               Conread position:200-420
               
               
               Cow position:chr21:18135629-18135851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:200-441
               
               
               Cow position:chr21:46607353-46607585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-447
               
               
               Cow position:chr21:13358569-13358317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):169, 70

               
               
               Conread position:200-447
               
               
               Cow position:chr21:42209386-42209634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:200-449
               
               
               Cow position:chr21:4099106-4098865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 29

               
               
               Conread position:200-449
               
               
               Cow position:chr21:39509149-39509394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):221, 64

               
               
               Conread position:200-450
               
               
               Cow position:chr21:12301271-12301522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:200-450
               
               
               Cow position:chr21:15741844-15742097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):168, 68

               
               
               Conread position:200-450
               
               
               Cow position:chr21:25764875-25764628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):190, 72

               
               
               Conread position:200-451
               
               
               Cow position:chr21:15239517-15239276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:200-451
               
               
               Cow position:chr21:23397612-23397855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:200-451
               
               
               Cow position:chr21:23800893-23801135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):220, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr21:25800635-25800389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):198, 35

               
               
               Conread position:200-451
               
               
               Cow position:chr21:31662706-31662458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):193, 13

               
               
               Conread position:200-451
               
               
               Cow position:chr21:44754549-44754786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:201-410
               
               
               Cow position:chr21:8671630-8671429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:201-444
               
               
               Cow position:chr21:49649855-49649631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):221, 17

               
               
               Conread position:201-445
               
               
               Cow position:chr21:21181416-21181176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:202-356
               
               
               Cow position:chr21:49661602-49661749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr21:8207014-8206761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:202-451
               
               
               Cow position:chr21:33727223-33727472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:202-451
               
               
               Cow position:chr21:36371719-36371479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):213, 30

               
               
               Conread position:203-356
               
               
               Cow position:chr21:44220602-44220449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:203-451
               
               
               Cow position:chr21:46242003-46242244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):203, 68

               
               
               Conread position:204-391
               
               
               Cow position:chr21:24674952-24674771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:204-451
               
               
               Cow position:chr21:9939953-9940197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):189, 67

               
               
               Conread position:207-451
               
               
               Cow position:chr21:12087829-12087584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):118, 64

               
               
               Conread position:222-448
               
               
               Cow position:chr21:8184508-8184278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:223-445
               
               
               Cow position:chr21:13036688-13036901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:224-376
               
               
               Cow position:chr21:2413270-2413119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr21:35997388-35997167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):196, 47

               
               
               Conread position:226-455
               
               
               Cow position:chr21:26753705-26753485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:239-452
               
               
               Cow position:chr21:47823069-47823284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:239-456
               
               
               Cow position:chr21:37718248-37718456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:240-451
               
               
               Cow position:chr21:6058447-6058648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:241-451
               
               
               Cow position:chr21:18379038-18378830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):181, 32

               
               
               Conread position:243-451
               
               
               Cow position:chr21:28997707-28997907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):176, 20

               
               
               Conread position:246-454
               
               
               Cow position:chr21:24698675-24698468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):173, 25

               
               
               Conread position:254-448
               
               
               Cow position:chr21:11019579-11019379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:258-451
               
               
               Cow position:chr21:1885608-1885799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:260-451
               
               
               Cow position:chr21:38720430-38720245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:260-454
               
               
               Cow position:chr21:26245097-26244908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:260-456
               
               
               Cow position:chr21:36910114-36909923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:261-451
               
               
               Cow position:chr21:22210067-22210251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:263-451
               
               
               Cow position:chr21:29978583-29978767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:264-451
               
               
               Cow position:chr21:42384686-42384503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:271-451
               
               
               Cow position:chr21:32903984-32904162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:292-455
               
               
               Cow position:chr21:30606936-30607100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:293-468
               
               
               Cow position:chr21:38774338-38774162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:167-455
               
               
               Cow position:chr22:7301636-7301911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:183-451
               
               
               Cow position:chr22:5927774-5928035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):236, 85

               
               
               Conread position:191-388
               
               
               Cow position:chr22:4027000-4026811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:191-451
               
               
               Cow position:chr22:11131070-11130794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 234

               
               
               Conread position:194-356
               
               
               Cow position:chr22:29090222-29090385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:196-388
               
               
               Cow position:chr22:25477224-25477035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:197-335
               
               
               Cow position:chr22:3063575-3063709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:197-355
               
               
               Cow position:chr22:17074545-17074390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:197-410
               
               
               Cow position:chr22:4753580-4753790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:197-450
               
               
               Cow position:chr22:15358422-15358172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):222, 74

               
               
               Conread position:197-450
               
               
               Cow position:chr22:41245426-41245172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:197-451
               
               
               Cow position:chr22:27224303-27224052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:197-451
               
               
               Cow position:chr22:33386334-33386581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 30

               
               
               Conread position:198-380
               
               
               Cow position:chr22:32690265-32690439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:198-447
               
               
               Cow position:chr22:34675695-34675451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr22:19652796-19653059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:199-356
               
               
               Cow position:chr22:29256777-29256621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:199-359
               
               
               Cow position:chr22:43873232-43873073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:199-369
               
               
               Cow position:chr22:44468979-44468810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:199-398
               
               
               Cow position:chr22:7287686-7287487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:199-399
               
               
               Cow position:chr22:39983022-39983220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:199-414
               
               
               Cow position:chr22:31192403-31192611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-420
               
               
               Cow position:chr22:16234329-16234109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:199-444
               
               
               Cow position:chr22:18486755-18486993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):220, 61

               
               
               Conread position:199-445
               
               
               Cow position:chr22:25715179-25714935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):222, 62

               
               
               Conread position:199-445
               
               
               Cow position:chr22:29441090-29441329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:199-451
               
               
               Cow position:chr22:534682-534426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:199-451
               
               
               Cow position:chr22:5384827-5384577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:199-451
               
               
               Cow position:chr22:5622550-5622791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):220, 5

               
               
               Conread position:199-451
               
               
               Cow position:chr22:42612634-42612383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):220, 74

               
               
               Conread position:199-459
               
               
               Cow position:chr22:19040194-19040447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:199-481
               
               
               Cow position:chr22:41927186-41927456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:200-354
               
               
               Cow position:chr22:23751007-23751159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-356
               
               
               Cow position:chr22:27469079-27468925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-375
               
               
               Cow position:chr22:18339770-18339940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:200-390
               
               
               Cow position:chr22:876453-876261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:200-426
               
               
               Cow position:chr22:17184512-17184739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):208, 71

               
               
               Conread position:200-432
               
               
               Cow position:chr22:28685499-28685274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:200-439
               
               
               Cow position:chr22:28672326-28672082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:200-441
               
               
               Cow position:chr22:2434387-2434147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:200-441
               
               
               Cow position:chr22:13921522-13921295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:200-445
               
               
               Cow position:chr22:15424308-15424073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:200-449
               
               
               Cow position:chr22:23009770-23010011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:200-451
               
               
               Cow position:chr22:9466782-9466537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):220, 32

               
               
               Conread position:200-451
               
               
               Cow position:chr22:30699357-30699104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:200-451
               
               
               Cow position:chr22:35029451-35029191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:200-451
               
               
               Cow position:chr22:41389280-41389033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr22:44923884-44924134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr22:45355550-45355305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):221, 70

               
               
               Conread position:200-455
               
               
               Cow position:chr22:19047640-19047896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:200-455
               
               
               Cow position:chr22:34736040-34735784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):53, 201

               
               
               Conread position:200-468
               
               
               Cow position:chr22:17780557-17780815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:201-363
               
               
               Cow position:chr22:33067129-33066973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:201-424
               
               
               Cow position:chr22:42945881-42946096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:201-451
               
               
               Cow position:chr22:2524141-2523888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:201-455
               
               
               Cow position:chr22:26183991-26184240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):218, 23

               
               
               Conread position:201-459
               
               
               Cow position:chr22:44835827-44835566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:202-342
               
               
               Cow position:chr22:17835308-17835170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:202-404
               
               
               Cow position:chr22:32053545-32053347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:202-451
               
               
               Cow position:chr22:11778440-11778684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:202-451
               
               
               Cow position:chr22:15914562-15914790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):218, 18

               
               
               Conread position:202-451
               
               
               Cow position:chr22:23580674-23580915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:202-454
               
               
               Cow position:chr22:26941959-26941716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):219, 30

               
               
               Conread position:203-389
               
               
               Cow position:chr22:45291491-45291311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:204-417
               
               
               Cow position:chr22:22999761-22999553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:205-451
               
               
               Cow position:chr22:2913445-2913205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):213, 64

               
               
               Conread position:206-404
               
               
               Cow position:chr22:29004260-29004447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:209-364
               
               
               Cow position:chr22:37554352-37554502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:213-455
               
               
               Cow position:chr22:6574905-6574662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):124, 55

               
               
               Conread position:215-387
               
               
               Cow position:chr22:14509314-14509489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:224-391
               
               
               Cow position:chr22:1081938-1081772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:224-399
               
               
               Cow position:chr22:19262979-19263156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:224-400
               
               
               Cow position:chr22:4036729-4036557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr22:21349371-21349589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 45

               
               
               Conread position:225-451
               
               
               Cow position:chr22:5337450-5337674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):194, 50

               
               
               Conread position:226-404
               
               
               Cow position:chr22:43352040-43352218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):159, 88

               
               
               Conread position:226-451
               
               
               Cow position:chr22:1563-1354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):195, 34

               
               
               Conread position:226-451
               
               
               Cow position:chr22:4651327-4651107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:227-451
               
               
               Cow position:chr22:139161-139376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):192, 27

               
               
               Conread position:228-451
               
               
               Cow position:chr22:10553535-10553759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:230-438
               
               
               Cow position:chr22:41468392-41468597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):188, 41

               
               
               Conread position:239-414
               
               
               Cow position:chr22:29868475-29868643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:240-454
               
               
               Cow position:chr22:10649647-10649856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):182, 31

               
               
               Conread position:241-451
               
               
               Cow position:chr22:7140777-7140568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:241-455
               
               
               Cow position:chr22:22997609-22997400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):178, 35

               
               
               Conread position:242-451
               
               
               Cow position:chr22:7102964-7102760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):179, 29

               
               
               Conread position:243-451
               
               
               Cow position:chr22:15398447-15398650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:250-443
               
               
               Cow position:chr22:12535659-12535846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):173, 39

               
               
               Conread position:251-467
               
               
               Cow position:chr22:26057502-26057288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:260-451
               
               
               Cow position:chr22:12967954-12968143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:260-451
               
               
               Cow position:chr22:14924616-14924806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:260-452
               
               
               Cow position:chr22:12678306-12678495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:261-447
               
               
               Cow position:chr22:1849187-1849001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:262-450
               
               
               Cow position:chr22:7518531-7518348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):158, 9

               
               
               Conread position:262-455
               
               
               Cow position:chr22:4161509-4161689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:271-456
               
               
               Cow position:chr22:45846245-45846067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:272-451
               
               
               Cow position:chr22:42605739-42605556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:281-448
               
               
               Cow position:chr22:26376359-26376198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:286-451
               
               
               Cow position:chr22:36280331-36280167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:290-445
               
               
               Cow position:chr22:11257663-11257814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:290-451
               
               
               Cow position:chr22:24071808-24071964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:305-452
               
               
               Cow position:chr22:26264159-26264304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:172-447
               
               
               Cow position:chr23:283170-283461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:173-424
               
               
               Cow position:chr23:13360033-13359785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:180-451
               
               
               Cow position:chr23:22396237-22396517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 120

               
               
               Conread position:181-451
               
               
               Cow position:chr23:6147836-6148113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):110, 168

               
               
               Conread position:186-452
               
               
               Cow position:chr23:41310849-41311105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):236, 82

               
               
               Conread position:192-417
               
               
               Cow position:chr23:23904140-23904365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):198, 68

               
               
               Conread position:192-451
               
               
               Cow position:chr23:11750947-11751199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:193-445
               
               
               Cow position:chr23:38732436-38732185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:194-455
               
               
               Cow position:chr23:30308093-30307838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:196-451
               
               
               Cow position:chr23:19774950-19774705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:196-451
               
               
               Cow position:chr23:20996639-20996396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:196-455
               
               
               Cow position:chr23:791853-792104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):218, 45

               
               
               Conread position:197-352
               
               
               Cow position:chr23:24411188-24411034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:197-407
               
               
               Cow position:chr23:28721056-28721259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):205, 72

               
               
               Conread position:197-451
               
               
               Cow position:chr23:21660137-21659875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 173

               
               
               Conread position:197-451
               
               
               Cow position:chr23:22660407-22660649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):223, 74

               
               
               Conread position:198-391
               
               
               Cow position:chr23:22272296-22272489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):155, 73

               
               
               Conread position:198-437
               
               
               Cow position:chr23:5389880-5389644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):217, 72

               
               
               Conread position:198-451
               
               
               Cow position:chr23:17000878-17000639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:198-456
               
               
               Cow position:chr23:21275838-21276096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:199-339
               
               
               Cow position:chr23:30735970-30736105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-371
               
               
               Cow position:chr23:30256046-30255871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:199-432
               
               
               Cow position:chr23:36082765-36082531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):163, 75

               
               
               Conread position:199-435
               
               
               Cow position:chr23:35155554-35155321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 71

               
               
               Conread position:199-447
               
               
               Cow position:chr23:39753300-39753052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:199-451
               
               
               Cow position:chr23:20585521-20585767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr23:23191984-23192219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):223, 19

               
               
               Conread position:199-451
               
               
               Cow position:chr23:26217735-26217494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):209, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr23:40891543-40891291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-456
               
               
               Cow position:chr23:18326984-18326733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-456
               
               
               Cow position:chr23:24704482-24704208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:200-355
               
               
               Cow position:chr23:19981505-19981659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):141, 71

               
               
               Conread position:200-356
               
               
               Cow position:chr23:33927987-33927832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-398
               
               
               Cow position:chr23:38941800-38941605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-418
               
               
               Cow position:chr23:26861611-26861405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-447
               
               
               Cow position:chr23:14840338-14840578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):200, 15

               
               
               Conread position:200-449
               
               
               Cow position:chr23:14126742-14126501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):219, 25

               
               
               Conread position:200-451
               
               
               Cow position:chr23:16961484-16961227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 234

               
               
               Conread position:200-451
               
               
               Cow position:chr23:19636083-19636329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:200-451
               
               
               Cow position:chr23:29272289-29272046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-456
               
               
               Cow position:chr23:26051218-26050962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:201-378
               
               
               Cow position:chr23:347571-347742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:201-449
               
               
               Cow position:chr23:37223895-37224134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):217, 70

               
               
               Conread position:201-451
               
               
               Cow position:chr23:21866919-21866673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:201-458
               
               
               Cow position:chr23:1717371-1717619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:202-405
               
               
               Cow position:chr23:21847932-21847730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr23:29345581-29345829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):59, 98

               
               
               Conread position:208-410
               
               
               Cow position:chr23:8929969-8930165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:208-441
               
               
               Cow position:chr23:5603107-5603343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:209-455
               
               
               Cow position:chr23:19001898-19002135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:224-451
               
               
               Cow position:chr23:40651317-40651532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:226-451
               
               
               Cow position:chr23:15872539-15872765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:227-433
               
               
               Cow position:chr23:6683901-6683698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:227-448
               
               
               Cow position:chr23:11434109-11434325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):191, 24

               
               
               Conread position:230-454
               
               
               Cow position:chr23:16072195-16072398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):191, 40

               
               
               Conread position:239-446
               
               
               Cow position:chr23:17092357-17092562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):179, 32

               
               
               Conread position:241-440
               
               
               Cow position:chr23:35497889-35498083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):178, 42

               
               
               Conread position:241-451
               
               
               Cow position:chr23:1677533-1677328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):178, 30

               
               
               Conread position:247-448
               
               
               Cow position:chr23:40862479-40862278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:248-451
               
               
               Cow position:chr23:16237125-16237320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):171, 23

               
               
               Conread position:249-456
               
               
               Cow position:chr23:14543092-14543296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:257-450
               
               
               Cow position:chr23:29393554-29393368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:259-456
               
               
               Cow position:chr23:38455055-38455255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:260-456
               
               
               Cow position:chr23:1923716-1923910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:271-420
               
               
               Cow position:chr23:40525874-40526021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:278-455
               
               
               Cow position:chr23:31607052-31607223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:311-451
               
               
               Cow position:chr23:6031947-6031806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:315-447
               
               
               Cow position:chr23:7550586-7550719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:163-451
               
               
               Cow position:chr24:37945438-37945726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):113, 120

               
               
               Conread position:189-448
               
               
               Cow position:chr24:16399278-16399524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:191-451
               
               
               Cow position:chr24:32194666-32194414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):236, 68

               
               
               Conread position:195-454
               
               
               Cow position:chr24:6507613-6507866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):226, 76

               
               
               Conread position:196-451
               
               
               Cow position:chr24:30860790-30860542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):225, 36

               
               
               Conread position:197-420
               
               
               Cow position:chr24:14746799-14746583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:197-451
               
               
               Cow position:chr24:15617320-15617566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):223, 71

               
               
               Conread position:197-452
               
               
               Cow position:chr24:32822621-32822869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:198-341
               
               
               Cow position:chr24:15909775-15909633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:198-438
               
               
               Cow position:chr24:22888746-22888507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:198-456
               
               
               Cow position:chr24:27054561-27054308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 22

               
               
               Conread position:198-456
               
               
               Cow position:chr24:31258186-31258436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:199-350
               
               
               Cow position:chr24:41332430-41332579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-377
               
               
               Cow position:chr24:36497583-36497754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-386
               
               
               Cow position:chr24:38292008-38291830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:199-419
               
               
               Cow position:chr24:42942966-42943184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):105, 70

               
               
               Conread position:199-432
               
               
               Cow position:chr24:40809214-40809439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:199-450
               
               
               Cow position:chr24:2970454-2970700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):224, 118

               
               
               Conread position:199-451
               
               
               Cow position:chr24:25165188-25164938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:199-451
               
               
               Cow position:chr24:36801533-36801285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:199-451
               
               
               Cow position:chr24:39350072-39350313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):222, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr24:40091433-40091669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:199-455
               
               
               Cow position:chr24:34368854-34369106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:200-399
               
               
               Cow position:chr24:23176549-23176742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:200-408
               
               
               Cow position:chr24:6427855-6427651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:200-410
               
               
               Cow position:chr24:28279775-28279569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:200-432
               
               
               Cow position:chr24:2143901-2143676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:200-432
               
               
               Cow position:chr24:28335411-28335635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):219, 46

               
               
               Conread position:200-446
               
               
               Cow position:chr24:32758610-32758849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):155, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr24:13353197-13352943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 206

               
               
               Conread position:200-451
               
               
               Cow position:chr24:18786777-18787014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):58, 35

               
               
               Conread position:200-451
               
               
               Cow position:chr24:24755600-24755348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr24:32158123-32158370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:200-452
               
               
               Cow position:chr24:17981337-17981094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-455
               
               
               Cow position:chr24:7079935-7079692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:201-339
               
               
               Cow position:chr24:2531732-2531598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:201-451
               
               
               Cow position:chr24:1438121-1438368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):218, 12

               
               
               Conread position:201-451
               
               
               Cow position:chr24:39682002-39681759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:202-380
               
               
               Cow position:chr24:16055361-16055537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:203-451
               
               
               Cow position:chr24:28349732-28349485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:207-451
               
               
               Cow position:chr24:25678172-25677943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:207-451
               
               
               Cow position:chr24:26455986-26455745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 28

               
               
               Conread position:207-454
               
               
               Cow position:chr24:14337873-14337633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:208-356
               
               
               Cow position:chr24:44929493-44929351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:212-410
               
               
               Cow position:chr24:39742955-39742760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:215-407
               
               
               Cow position:chr24:10546208-10546021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:223-353
               
               
               Cow position:chr24:4785545-4785673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:231-458
               
               
               Cow position:chr24:12452905-12452680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):187, 40

               
               
               Conread position:232-403
               
               
               Cow position:chr24:39474283-39474458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):133, 36

               
               
               Conread position:239-447
               
               
               Cow position:chr24:19754685-19754483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:239-450
               
               
               Cow position:chr24:11201534-11201738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr24:35827850-35827640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:240-451
               
               
               Cow position:chr24:19612119-19611915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):180, 31

               
               
               Conread position:243-451
               
               
               Cow position:chr24:19769601-19769393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:251-446
               
               
               Cow position:chr24:11456740-11456929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):168, 17

               
               
               Conread position:253-445
               
               
               Cow position:chr24:32085833-32086020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):166, 10

               
               
               Conread position:253-451
               
               
               Cow position:chr24:23824322-23824519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:256-441
               
               
               Cow position:chr24:12263617-12263797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:256-451
               
               
               Cow position:chr24:27900824-27900633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):162, 15

               
               
               Conread position:260-470
               
               
               Cow position:chr24:27418011-27418215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:275-449
               
               
               Cow position:chr24:24495762-24495932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):143, 46

               
               
               Conread position:293-456
               
               
               Cow position:chr24:36713815-36713654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:294-451
               
               
               Cow position:chr24:18393464-18393620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:309-451
               
               
               Cow position:chr24:23685022-23685165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:186-445
               
               
               Cow position:chr25:20624749-20625001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):227, 69

               
               
               Conread position:191-411
               
               
               Cow position:chr25:20428501-20428285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:193-338
               
               
               Cow position:chr25:18228357-18228215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:194-449
               
               
               Cow position:chr25:23410839-23410593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):196, 77

               
               
               Conread position:195-391
               
               
               Cow position:chr25:13321357-13321167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:195-441
               
               
               Cow position:chr25:11131759-11131518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):194, 73

               
               
               Conread position:196-354
               
               
               Cow position:chr25:9109517-9109364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:196-449
               
               
               Cow position:chr25:20076676-20076422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:197-380
               
               
               Cow position:chr25:17701815-17701997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr25:33204908-33205153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):217, 27

               
               
               Conread position:198-406
               
               
               Cow position:chr25:18448987-18448783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):195, 73

               
               
               Conread position:198-447
               
               
               Cow position:chr25:33246089-33245852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:198-451
               
               
               Cow position:chr25:22575353-22575593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr25:27534743-27534992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:198-456
               
               
               Cow position:chr25:40956811-40957065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):223, 72

               
               
               Conread position:199-387
               
               
               Cow position:chr25:15025083-15024901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:199-423
               
               
               Cow position:chr25:6178209-6177987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-439
               
               
               Cow position:chr25:24136270-24136500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr25:14075478-14075230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:199-455
               
               
               Cow position:chr25:26240714-26240461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:200-418
               
               
               Cow position:chr25:30021247-30021033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:200-427
               
               
               Cow position:chr25:4716430-4716210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):221, 74

               
               
               Conread position:200-437
               
               
               Cow position:chr25:18239685-18239448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:200-438
               
               
               Cow position:chr25:8576867-8576628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 70

               
               
               Conread position:200-447
               
               
               Cow position:chr25:26655085-26654841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:200-449
               
               
               Cow position:chr25:18000357-18000600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr25:26457503-26457753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr25:18266336-18266082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:201-447
               
               
               Cow position:chr25:29312164-29312409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):145, 70

               
               
               Conread position:201-450
               
               
               Cow position:chr25:36501067-36501308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 69

               
               
               Conread position:201-454
               
               
               Cow position:chr25:23248568-23248813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):218, 67

               
               
               Conread position:201-456
               
               
               Cow position:chr25:24405560-24405813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):205, 70

               
               
               Conread position:202-398
               
               
               Cow position:chr25:41093965-41094157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:202-447
               
               
               Cow position:chr25:21893525-21893267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 207

               
               
               Conread position:202-451
               
               
               Cow position:chr25:8511920-8512163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:202-451
               
               
               Cow position:chr25:12932798-12932558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:202-454
               
               
               Cow position:chr25:26089636-26089892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:202-455
               
               
               Cow position:chr25:29215233-29215466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):217, 59

               
               
               Conread position:204-380
               
               
               Cow position:chr25:5365702-5365525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:204-410
               
               
               Cow position:chr25:14466929-14467124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):188, 28

               
               
               Conread position:208-449
               
               
               Cow position:chr25:13560048-13560283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:209-454
               
               
               Cow position:chr25:33691715-33691480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:222-451
               
               
               Cow position:chr25:13387961-13387730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:224-452
               
               
               Cow position:chr25:13562582-13562362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):168, 40

               
               
               Conread position:225-451
               
               
               Cow position:chr25:8080875-8080650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:227-451
               
               
               Cow position:chr25:14570519-14570299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):197, 43

               
               
               Conread position:229-451
               
               
               Cow position:chr25:10748355-10748567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:231-451
               
               
               Cow position:chr25:18161426-18161213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 31

               
               
               Conread position:239-451
               
               
               Cow position:chr25:20811238-20811444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-451
               
               
               Cow position:chr25:22909725-22909930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr25:34378970-34379181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):182, 29

               
               
               Conread position:241-451
               
               
               Cow position:chr25:16691790-16691591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:248-371
               
               
               Cow position:chr25:395954-395835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:252-451
               
               
               Cow position:chr25:22542691-22542875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:260-455
               
               
               Cow position:chr25:30619180-30618987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:261-468
               
               
               Cow position:chr25:22750892-22751097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:265-451
               
               
               Cow position:chr25:12305387-12305203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:275-451
               
               
               Cow position:chr25:16560073-16560248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):144, 28

               
               
               Conread position:278-445
               
               
               Cow position:chr25:13727290-13727453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 43

               
               
               Conread position:280-450
               
               
               Cow position:chr25:20496634-20496464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:293-451
               
               
               Cow position:chr25:9519402-9519246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:189-451
               
               
               Cow position:chr26:19111116-19110857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 74

               
               
               Conread position:191-454
               
               
               Cow position:chr26:16604494-16604226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:195-362
               
               
               Cow position:chr26:12652046-12652211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:195-399
               
               
               Cow position:chr26:10523255-10523450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:195-450
               
               
               Cow position:chr26:21860019-21859768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:196-451
               
               
               Cow position:chr26:9632167-9632425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 39

               
               
               Conread position:196-451
               
               
               Cow position:chr26:18719451-18719201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):225, 75

               
               
               Conread position:197-451
               
               
               Cow position:chr26:6475243-6475484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:197-452
               
               
               Cow position:chr26:14905602-14905866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:199-378
               
               
               Cow position:chr26:34100808-34100975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:199-445
               
               
               Cow position:chr26:9101918-9102164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):203, 74

               
               
               Conread position:199-447
               
               
               Cow position:chr26:15212004-15211752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:199-449
               
               
               Cow position:chr26:9666222-9666461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):220, 33

               
               
               Conread position:199-450
               
               
               Cow position:chr26:2196397-2196643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr26:2769648-2769894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:199-454
               
               
               Cow position:chr26:14080897-14080653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:199-456
               
               
               Cow position:chr26:6470081-6470331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:199-456
               
               
               Cow position:chr26:32215640-32215384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:200-383
               
               
               Cow position:chr26:7387961-7387779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:200-391
               
               
               Cow position:chr26:10137549-10137736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-416
               
               
               Cow position:chr26:31466868-31466660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):204, 21

               
               
               Conread position:200-432
               
               
               Cow position:chr26:17203950-17204182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:200-451
               
               
               Cow position:chr26:7956041-7955798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr26:9064527-9064287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):219, 53

               
               
               Conread position:200-451
               
               
               Cow position:chr26:27585965-27585720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:200-452
               
               
               Cow position:chr26:12520221-12519964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:200-454
               
               
               Cow position:chr26:14924675-14924426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):55, 72

               
               
               Conread position:201-402
               
               
               Cow position:chr26:12579821-12580016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:201-410
               
               
               Cow position:chr26:16112995-16113204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:201-437
               
               
               Cow position:chr26:3756408-3756187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):221, 6

               
               
               Conread position:201-451
               
               
               Cow position:chr26:12669390-12669143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:201-451
               
               
               Cow position:chr26:32865699-32865943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):126, 70

               
               
               Conread position:208-451
               
               
               Cow position:chr26:7162226-7162470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 62

               
               
               Conread position:215-456
               
               
               Cow position:chr26:17289373-17289147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-388
               
               
               Cow position:chr26:19768639-19768799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:231-451
               
               
               Cow position:chr26:10292762-10292535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:239-449
               
               
               Cow position:chr26:11567819-11568023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr26:17155175-17155377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):181, 32

               
               
               Conread position:241-445
               
               
               Cow position:chr26:34118882-34119086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:241-451
               
               
               Cow position:chr26:19903532-19903325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):180, 30

               
               
               Conread position:243-451
               
               
               Cow position:chr26:30605216-30605414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):176, 28

               
               
               Conread position:245-451
               
               
               Cow position:chr26:29353360-29353560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:245-451
               
               
               Cow position:chr26:34169038-34169240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:185-449
               
               
               Cow position:chr27:27050140-27049883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):234, 45

               
               
               Conread position:186-476
               
               
               Cow position:chr27:22108440-22108156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:190-455
               
               
               Cow position:chr27:28002052-28001779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:196-437
               
               
               Cow position:chr27:13970602-13970374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):223, 11

               
               
               Conread position:196-451
               
               
               Cow position:chr27:24509601-24509844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:197-383
               
               
               Cow position:chr27:11762921-11762741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr27:24225119-24224865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):185, 23

               
               
               Conread position:198-352
               
               
               Cow position:chr27:1899793-1899642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:198-438
               
               
               Cow position:chr27:19544142-19543904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr27:19083939-19083687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):159, 72

               
               
               Conread position:198-451
               
               
               Cow position:chr27:27053083-27053323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):224, 22

               
               
               Conread position:198-456
               
               
               Cow position:chr27:13005627-13005872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-398
               
               
               Cow position:chr27:10119304-10119103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:199-441
               
               
               Cow position:chr27:20766174-20765941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:199-443
               
               
               Cow position:chr27:15524028-15523779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:199-449
               
               
               Cow position:chr27:14937650-14937402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:199-451
               
               
               Cow position:chr27:1536948-1536690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr27:2847633-2847880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr27:8048952-8048715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr27:8430660-8430411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:199-452
               
               
               Cow position:chr27:6159767-6160010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):223, 11

               
               
               Conread position:200-381
               
               
               Cow position:chr27:11746368-11746547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-387
               
               
               Cow position:chr27:16526061-16525880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-408
               
               
               Cow position:chr27:13958563-13958358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:200-424
               
               
               Cow position:chr27:25970187-25970401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-428
               
               
               Cow position:chr27:25982938-25982722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:200-447
               
               
               Cow position:chr27:20749241-20748984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:200-450
               
               
               Cow position:chr27:26441268-26441035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr27:12244346-12244098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:200-455
               
               
               Cow position:chr27:490684-490927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):223, 6

               
               
               Conread position:200-456
               
               
               Cow position:chr27:29039160-29038907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:200-457
               
               
               Cow position:chr27:12247467-12247710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:201-406
               
               
               Cow position:chr27:23662812-23662613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-426
               
               
               Cow position:chr27:21578794-21578573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:201-451
               
               
               Cow position:chr27:22225807-22225568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:202-389
               
               
               Cow position:chr27:25879884-25880068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr27:6453990-6454238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:202-451
               
               
               Cow position:chr27:11356749-11356512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):217, 13

               
               
               Conread position:207-410
               
               
               Cow position:chr27:21393725-21393519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:207-443
               
               
               Cow position:chr27:30365105-30365337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):211, 67

               
               
               Conread position:210-451
               
               
               Cow position:chr27:783496-783729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:220-451
               
               
               Cow position:chr27:27233819-27234049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:224-389
               
               
               Cow position:chr27:24333813-24333655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr27:25998505-25998730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:225-455
               
               
               Cow position:chr27:21681520-21681293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:230-450
               
               
               Cow position:chr27:8272820-8273040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:234-449
               
               
               Cow position:chr27:13977732-13977516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:240-445
               
               
               Cow position:chr27:21138650-21138843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):140, 30

               
               
               Conread position:242-410
               
               
               Cow position:chr27:6883855-6884021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:251-450
               
               
               Cow position:chr27:27842075-27841879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):170, 5

               
               
               Conread position:251-451
               
               
               Cow position:chr27:19648112-19647912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):170, 20

               
               
               Conread position:256-435
               
               
               Cow position:chr27:22781883-22782057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):149, 14

               
               
               Conread position:269-439
               
               
               Cow position:chr27:2640128-2639962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:271-451
               
               
               Cow position:chr27:19660781-19660962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:314-454
               
               
               Cow position:chr27:25471031-25471171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 88

               
               
               Conread position:186-438
               
               
               Cow position:chr28:20275320-20275074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):232, 27

               
               
               Conread position:188-455
               
               
               Cow position:chr28:13866033-13865773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:190-451
               
               
               Cow position:chr28:34198918-34199173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:191-451
               
               
               Cow position:chr28:33284919-33285179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 80

               
               
               Conread position:193-398
               
               
               Cow position:chr28:23703594-23703392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:193-451
               
               
               Cow position:chr28:25564271-25564016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 73

               
               
               Conread position:194-451
               
               
               Cow position:chr28:9237501-9237249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):226, 77

               
               
               Conread position:195-437
               
               
               Cow position:chr28:11180979-11181216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):162, 23

               
               
               Conread position:195-451
               
               
               Cow position:chr28:20963342-20963597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:196-420
               
               
               Cow position:chr28:17362416-17362636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):218, 77

               
               
               Conread position:197-448
               
               
               Cow position:chr28:5474848-5475093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):217, 74

               
               
               Conread position:197-456
               
               
               Cow position:chr28:33485831-33485564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:198-409
               
               
               Cow position:chr28:31373288-31373084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr28:3769481-3769734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:198-454
               
               
               Cow position:chr28:19564033-19564300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 224

               
               
               Conread position:198-455
               
               
               Cow position:chr28:4274662-4274910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):221, 65

               
               
               Conread position:198-458
               
               
               Cow position:chr28:31165799-31166058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:199-354
               
               
               Cow position:chr28:3940010-3940167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:199-412
               
               
               Cow position:chr28:24500389-24500176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):76, 64

               
               
               Conread position:199-420
               
               
               Cow position:chr28:7157013-7156800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:199-449
               
               
               Cow position:chr28:23668603-23668848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:199-450
               
               
               Cow position:chr28:32366019-32365778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:199-451
               
               
               Cow position:chr28:1202064-1202306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):219, 33

               
               
               Conread position:199-455
               
               
               Cow position:chr28:25825683-25825938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:199-468
               
               
               Cow position:chr28:14508184-14508451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:200-351
               
               
               Cow position:chr28:17624990-17625140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:200-355
               
               
               Cow position:chr28:34749917-34749763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-386
               
               
               Cow position:chr28:26784056-26784244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:200-402
               
               
               Cow position:chr28:5980098-5979904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-409
               
               
               Cow position:chr28:26719530-26719317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:200-410
               
               
               Cow position:chr28:3822960-3823157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-420
               
               
               Cow position:chr28:9294311-9294529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr28:6643099-6643349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 118

               
               
               Conread position:200-451
               
               
               Cow position:chr28:19253659-19253414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:200-452
               
               
               Cow position:chr28:3078496-3078749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:200-456
               
               
               Cow position:chr28:23007542-23007804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:201-391
               
               
               Cow position:chr28:16041044-16041225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-406
               
               
               Cow position:chr28:17345687-17345889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:201-432
               
               
               Cow position:chr28:12999274-12999048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:202-451
               
               
               Cow position:chr28:2517641-2517878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):218, 47

               
               
               Conread position:202-451
               
               
               Cow position:chr28:7539979-7540225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 67

               
               
               Conread position:202-481
               
               
               Cow position:chr28:32366073-32366336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):223, 18

               
               
               Conread position:204-451
               
               
               Cow position:chr28:4764054-4763810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 31

               
               
               Conread position:204-478
               
               
               Cow position:chr28:18934631-18934357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:206-451
               
               
               Cow position:chr28:15678062-15677823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:208-455
               
               
               Cow position:chr28:9176586-9176824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):192, 38

               
               
               Conread position:222-451
               
               
               Cow position:chr28:11007361-11007125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:224-404
               
               
               Cow position:chr28:25340427-25340253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:224-452
               
               
               Cow position:chr28:32844776-32844999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):183, 47

               
               
               Conread position:224-455
               
               
               Cow position:chr28:17601717-17601943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:225-358
               
               
               Cow position:chr28:22421828-22421960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:225-423
               
               
               Cow position:chr28:8336118-8335922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:227-373
               
               
               Cow position:chr28:15406213-15406071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-451
               
               
               Cow position:chr28:15081767-15081989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):191, 44

               
               
               Conread position:230-441
               
               
               Cow position:chr28:7805270-7805480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):197, 43

               
               
               Conread position:239-437
               
               
               Cow position:chr28:1604958-1604771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):183, 28

               
               
               Conread position:244-409
               
               
               Cow position:chr28:21873897-21873734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:246-451
               
               
               Cow position:chr28:11500749-11500952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:247-446
               
               
               Cow position:chr28:20313413-20313214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:255-468
               
               
               Cow position:chr28:12046786-12046998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):164, 15

               
               
               Conread position:260-455
               
               
               Cow position:chr28:27161203-27161397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:261-451
               
               
               Cow position:chr28:4881117-4881302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:280-456
               
               
               Cow position:chr28:2814406-2814578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:280-456
               
               
               Cow position:chr28:13693852-13693681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:283-454
               
               
               Cow position:chr28:21570290-21570119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:289-448
               
               
               Cow position:chr28:4098924-4098766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 119

               
               
               Conread position:183-451
               
               
               Cow position:chr29:9512453-9512186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:190-451
               
               
               Cow position:chr29:5976606-5976858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):232, 32

               
               
               Conread position:195-354
               
               
               Cow position:chr29:943003-942842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 122

               
               
               Conread position:195-451
               
               
               Cow position:chr29:26129669-26129430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):223, 27

               
               
               Conread position:197-382
               
               
               Cow position:chr29:27688565-27688744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:197-449
               
               
               Cow position:chr29:356502-356249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:198-371
               
               
               Cow position:chr29:21012169-21012337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:198-432
               
               
               Cow position:chr29:29302486-29302713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:198-437
               
               
               Cow position:chr29:26318029-26317791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):166, 71

               
               
               Conread position:198-451
               
               
               Cow position:chr29:13634124-13634373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):155, 60

               
               
               Conread position:198-451
               
               
               Cow position:chr29:29559545-29559790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):221, 53

               
               
               Conread position:198-451
               
               
               Cow position:chr29:39023161-39023424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:198-451
               
               
               Cow position:chr29:41083317-41083079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):220, 20

               
               
               Conread position:199-346
               
               
               Cow position:chr29:19666-19520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 70

               
               
               Conread position:199-356
               
               
               Cow position:chr29:9662191-9662036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-447
               
               
               Cow position:chr29:12625803-12626047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:199-454
               
               
               Cow position:chr29:21174531-21174773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-456
               
               
               Cow position:chr29:6208236-6207987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):222, 65

               
               
               Conread position:199-460
               
               
               Cow position:chr29:6772307-6772051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:200-345
               
               
               Cow position:chr29:8794528-8794382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:200-384
               
               
               Cow position:chr29:19607350-19607531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-391
               
               
               Cow position:chr29:10153618-10153810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):75, 149

               
               
               Conread position:200-410
               
               
               Cow position:chr29:7407730-7407932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:200-445
               
               
               Cow position:chr29:942795-942562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):219, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr29:8862305-8862550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:200-451
               
               
               Cow position:chr29:11005905-11005659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):222, 22

               
               
               Conread position:200-451
               
               
               Cow position:chr29:21186699-21186946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):222, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr29:35442287-35442533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-452
               
               
               Cow position:chr29:24603959-24604212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:200-454
               
               
               Cow position:chr29:21265935-21265685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:200-456
               
               
               Cow position:chr29:15940463-15940711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):189, 69

               
               
               Conread position:200-463
               
               
               Cow position:chr29:5616693-5616954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-345
               
               
               Cow position:chr29:32080720-32080578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-387
               
               
               Cow position:chr29:19734835-19734660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-432
               
               
               Cow position:chr29:18963908-18963677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):196, 70

               
               
               Conread position:201-443
               
               
               Cow position:chr29:11366407-11366171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):220, 17

               
               
               Conread position:201-451
               
               
               Cow position:chr29:18021509-18021753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:201-454
               
               
               Cow position:chr29:37960804-37961054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):221, 50

               
               
               Conread position:202-410
               
               
               Cow position:chr29:708958-709164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:202-450
               
               
               Cow position:chr29:7663100-7663343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):204, 25

               
               
               Conread position:202-451
               
               
               Cow position:chr29:21675563-21675322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):217, 37

               
               
               Conread position:202-451
               
               
               Cow position:chr29:22895900-22895649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 68

               
               
               Conread position:202-455
               
               
               Cow position:chr29:11677289-11677534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):195, 69

               
               
               Conread position:202-488
               
               
               Cow position:chr29:7054583-7054310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):217, 16

               
               
               Conread position:202-526
               
               
               Cow position:chr29:1340955-1340640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:204-407
               
               
               Cow position:chr29:40337371-40337568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:204-437
               
               
               Cow position:chr29:26299140-26298914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):218, 66

               
               
               Conread position:204-451
               
               
               Cow position:chr29:4367894-4367650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 48

               
               
               Conread position:208-355
               
               
               Cow position:chr29:3050335-3050192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:210-451
               
               
               Cow position:chr29:19509105-19508880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:215-445
               
               
               Cow position:chr29:14758704-14758928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):206, 5

               
               
               Conread position:215-451
               
               
               Cow position:chr29:19907513-19907283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:222-452
               
               
               Cow position:chr29:38758876-38759093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr29:25426508-25426729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:226-448
               
               
               Cow position:chr29:26985376-26985159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):195, 52

               
               
               Conread position:230-451
               
               
               Cow position:chr29:13126975-13127194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:239-456
               
               
               Cow position:chr29:13554273-13554058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:241-451
               
               
               Cow position:chr29:9937948-9938158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):151, 55

               
               
               Conread position:242-450
               
               
               Cow position:chr29:4444851-4444643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):185, 28

               
               
               Conread position:242-451
               
               
               Cow position:chr29:9912310-9912100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:242-451
               
               
               Cow position:chr29:25923829-25924039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):164, 30

               
               
               Conread position:243-447
               
               
               Cow position:chr29:18695382-18695181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):176, 25

               
               
               Conread position:243-451
               
               
               Cow position:chr29:41530981-41530775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:246-451
               
               
               Cow position:chr29:32655306-32655505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:249-456
               
               
               Cow position:chr29:16055006-16055207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):170, 25

               
               
               Conread position:250-451
               
               
               Cow position:chr29:86886-87088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:253-451
               
               
               Cow position:chr29:650396-650207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:254-365
               
               
               Cow position:chr29:36435551-36435441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:255-456
               
               
               Cow position:chr29:13639247-13639447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:266-451
               
               
               Cow position:chr29:19897719-19897535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):155, 54

               
               
               Conread position:271-451
               
               
               Cow position:chr29:7103663-7103483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:273-446
               
               
               Cow position:chr29:38581082-38580910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 68

               
               
               Conread position:285-451
               
               
               Cow position:chr29:23233538-23233378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:171-445
               
               
               Cow position:chr3:36204734-36204466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 55

               
               
               Conread position:184-454
               
               
               Cow position:chr3:74846538-74846809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:188-451
               
               
               Cow position:chr3:28478235-28477995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):146, 27

               
               
               Conread position:193-436
               
               
               Cow position:chr3:56483679-56483432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:195-449
               
               
               Cow position:chr3:55373409-55373661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:196-450
               
               
               Cow position:chr3:20092369-20092607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:196-451
               
               
               Cow position:chr3:14505758-14506010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:196-456
               
               
               Cow position:chr3:74205652-74205909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):204, 75

               
               
               Conread position:197-412
               
               
               Cow position:chr3:37485646-37485854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:197-449
               
               
               Cow position:chr3:5601013-5601259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr3:74533508-74533254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 208

               
               
               Conread position:197-455
               
               
               Cow position:chr3:2199038-2198785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:198-382
               
               
               Cow position:chr3:24300520-24300333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:198-414
               
               
               Cow position:chr3:51780842-51781051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:198-432
               
               
               Cow position:chr3:24539027-24538798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):223, 73

               
               
               Conread position:198-447
               
               
               Cow position:chr3:26904272-26904020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):63, 150

               
               
               Conread position:198-447
               
               
               Cow position:chr3:54435141-54434884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 177

               
               
               Conread position:198-451
               
               
               Cow position:chr3:9074191-9074440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr3:18216622-18216865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):185, 24

               
               
               Conread position:198-451
               
               
               Cow position:chr3:59608651-59608407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):220, 22

               
               
               Conread position:199-409
               
               
               Cow position:chr3:909477-909687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:199-417
               
               
               Cow position:chr3:49131909-49132126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:199-426
               
               
               Cow position:chr3:26493085-26493302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):223, 51

               
               
               Conread position:199-432
               
               
               Cow position:chr3:57829931-57830164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:199-438
               
               
               Cow position:chr3:41550222-41550459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:199-438
               
               
               Cow position:chr3:64172594-64172359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:199-441
               
               
               Cow position:chr3:40100557-40100793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:199-446
               
               
               Cow position:chr3:57634418-57634168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:199-447
               
               
               Cow position:chr3:18725491-18725730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:199-451
               
               
               Cow position:chr3:5365837-5365583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:199-451
               
               
               Cow position:chr3:5374481-5374238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):191, 25

               
               
               Conread position:199-451
               
               
               Cow position:chr3:9630034-9629789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):174, 61

               
               
               Conread position:199-451
               
               
               Cow position:chr3:20993967-20993717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr3:28908044-28908298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:199-451
               
               
               Cow position:chr3:54862268-54862509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:199-451
               
               
               Cow position:chr3:56637805-56637574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr3:58764914-58765173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:199-451
               
               
               Cow position:chr3:64319337-64319100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:199-451
               
               
               Cow position:chr3:73764043-73764290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 87

               
               
               Conread position:199-456
               
               
               Cow position:chr3:18687073-18686808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:200-345
               
               
               Cow position:chr3:33797831-33797689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-358
               
               
               Cow position:chr3:68085962-68086113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-397
               
               
               Cow position:chr3:25076014-25076209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-407
               
               
               Cow position:chr3:61411273-61411076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-426
               
               
               Cow position:chr3:54340270-54340492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:200-442
               
               
               Cow position:chr3:48271478-48271245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:200-449
               
               
               Cow position:chr3:31932953-31933189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):219, 19

               
               
               Conread position:200-449
               
               
               Cow position:chr3:37186979-37186735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):220, 71

               
               
               Conread position:200-449
               
               
               Cow position:chr3:69517250-69516991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):33, 205

               
               
               Conread position:200-451
               
               
               Cow position:chr3:3036770-3037025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 64

               
               
               Conread position:200-451
               
               
               Cow position:chr3:23091826-23092072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr3:26088844-26089098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr3:36100982-36100741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):219, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr3:42480766-42480522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):202, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr3:42584690-42584446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):205, 68

               
               
               Conread position:200-451
               
               
               Cow position:chr3:51492936-51492687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr3:55991717-55991961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):219, 23

               
               
               Conread position:200-451
               
               
               Cow position:chr3:61116701-61116951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 7

               
               
               Conread position:200-451
               
               
               Cow position:chr3:77225264-77225021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):221, 68

               
               
               Conread position:200-454
               
               
               Cow position:chr3:58131143-58130895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:200-454
               
               
               Cow position:chr3:74611716-74611467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 74

               
               
               Conread position:200-455
               
               
               Cow position:chr3:50614794-50614539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):193, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr3:8924193-8923946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):185, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr3:75777898-75778161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 207

               
               
               Conread position:200-471
               
               
               Cow position:chr3:15228670-15228936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:200-480
               
               
               Cow position:chr3:50281600-50281873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):120, 33

               
               
               Conread position:201-341
               
               
               Cow position:chr3:67274973-67275116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:201-407
               
               
               Cow position:chr3:73741718-73741922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:201-410
               
               
               Cow position:chr3:17633894-17634098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:201-417
               
               
               Cow position:chr3:60389922-60389701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:201-447
               
               
               Cow position:chr3:64280768-64281022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 218

               
               
               Conread position:201-449
               
               
               Cow position:chr3:24353010-24352768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 58

               
               
               Conread position:201-451
               
               
               Cow position:chr3:62884348-62884111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):218, 61

               
               
               Conread position:201-451
               
               
               Cow position:chr3:67744471-67744721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:202-418
               
               
               Cow position:chr3:65771186-65771395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:202-438
               
               
               Cow position:chr3:73436290-73436524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):217, 67

               
               
               Conread position:202-447
               
               
               Cow position:chr3:58175050-58174816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):188, 69

               
               
               Conread position:202-451
               
               
               Cow position:chr3:8752935-8752693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr3:23111364-23111599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr3:39910909-39911151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:202-455
               
               
               Cow position:chr3:15221368-15221618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 11

               
               
               Conread position:203-416
               
               
               Cow position:chr3:1004784-1004585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:203-430
               
               
               Cow position:chr3:52835731-52835960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 71

               
               
               Conread position:203-460
               
               
               Cow position:chr3:11309992-11310246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:204-444
               
               
               Cow position:chr3:20471218-20471453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:204-451
               
               
               Cow position:chr3:8394085-8393842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:205-452
               
               
               Cow position:chr3:3985482-3985232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 151

               
               
               Conread position:207-455
               
               
               Cow position:chr3:3736445-3736197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 63

               
               
               Conread position:207-459
               
               
               Cow position:chr3:54881920-54881659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 62

               
               
               Conread position:208-405
               
               
               Cow position:chr3:10431744-10431554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:209-450
               
               
               Cow position:chr3:82074920-82075154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):192, 62

               
               
               Conread position:212-451
               
               
               Cow position:chr3:12255619-12255383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:215-451
               
               
               Cow position:chr3:53588247-53588480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 56

               
               
               Conread position:221-451
               
               
               Cow position:chr3:25251036-25250815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:222-451
               
               
               Cow position:chr3:18458536-18458753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr3:68262891-68262671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:224-456
               
               
               Cow position:chr3:34675851-34675621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):198, 52

               
               
               Conread position:224-456
               
               
               Cow position:chr3:35278699-35278473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):159, 45

               
               
               Conread position:225-456
               
               
               Cow position:chr3:4050327-4050095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:226-406
               
               
               Cow position:chr3:34085929-34086106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:227-376
               
               
               Cow position:chr3:75142458-75142598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:227-451
               
               
               Cow position:chr3:15655020-15655241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:227-451
               
               
               Cow position:chr3:48629463-48629687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:228-451
               
               
               Cow position:chr3:53091608-53091396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:230-451
               
               
               Cow position:chr3:66707947-66708165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):177, 23

               
               
               Conread position:231-451
               
               
               Cow position:chr3:8457776-8457560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:232-451
               
               
               Cow position:chr3:50348074-50347871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):190, 36

               
               
               Conread position:235-451
               
               
               Cow position:chr3:26553604-26553808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 36

               
               
               Conread position:236-424
               
               
               Cow position:chr3:58865357-58865537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:239-418
               
               
               Cow position:chr3:64536456-64536623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:239-448
               
               
               Cow position:chr3:5419750-5419954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr3:33327823-33327611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):183, 31

               
               
               Conread position:239-451
               
               
               Cow position:chr3:41718505-41718299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr3:50462450-50462244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):179, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr3:51146558-51146763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):181, 33

               
               
               Conread position:239-455
               
               
               Cow position:chr3:45648245-45648034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:241-432
               
               
               Cow position:chr3:29507693-29507503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):166, 30

               
               
               Conread position:243-456
               
               
               Cow position:chr3:35873863-35874067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):146, 28

               
               
               Conread position:247-451
               
               
               Cow position:chr3:61009336-61009531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:249-451
               
               
               Cow position:chr3:27532551-27532751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):170, 21

               
               
               Conread position:251-451
               
               
               Cow position:chr3:27785368-27785175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:254-456
               
               
               Cow position:chr3:28238472-28238671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):165, 147

               
               
               Conread position:257-468
               
               
               Cow position:chr3:23920334-23920538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:260-450
               
               
               Cow position:chr3:57624559-57624371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:268-451
               
               
               Cow position:chr3:55778119-55777939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 28

               
               
               Conread position:275-451
               
               
               Cow position:chr3:27545740-27545916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:275-451
               
               
               Cow position:chr3:63203512-63203334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:276-441
               
               
               Cow position:chr3:15684844-15685009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):144, 41

               
               
               Conread position:276-451
               
               
               Cow position:chr3:79376345-79376174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):145, 41

               
               
               Conread position:293-450
               
               
               Cow position:chr3:78530603-78530440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:298-439
               
               
               Cow position:chr3:77981261-77981402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:301-447
               
               
               Cow position:chr3:14632930-14633077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 96

               
               
               Conread position:302-451
               
               
               Cow position:chr3:11712017-11711867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:314-444
               
               
               Cow position:chr3:69105446-69105314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:314-450
               
               
               Cow position:chr3:34741912-34741774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:176-437
               
               
               Cow position:chr4:5798158-5797899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:180-447
               
               
               Cow position:chr4:22860519-22860787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:184-443
               
               
               Cow position:chr4:65406192-65406438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):238, 36

               
               
               Conread position:184-456
               
               
               Cow position:chr4:21249843-21250110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:185-451
               
               
               Cow position:chr4:21365586-21365328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 86

               
               
               Conread position:187-454
               
               
               Cow position:chr4:44449321-44449587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 166

               
               
               Conread position:188-451
               
               
               Cow position:chr4:31172853-31172597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):234, 83

               
               
               Conread position:189-451
               
               
               Cow position:chr4:34369267-34369530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:190-314
               
               
               Cow position:chr4:49658728-49658605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:190-447
               
               
               Cow position:chr4:23311091-23311331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):183, 81

               
               
               Conread position:191-385
               
               
               Cow position:chr4:51908310-51908118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:191-451
               
               
               Cow position:chr4:21862692-21862940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:191-451
               
               
               Cow position:chr4:48409089-48409348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):215, 180

               
               
               Conread position:192-456
               
               
               Cow position:chr4:21259400-21259133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:193-388
               
               
               Cow position:chr4:24415729-24415549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:195-471
               
               
               Cow position:chr4:25370286-25370017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 135

               
               
               Conread position:196-339
               
               
               Cow position:chr4:19334709-19334849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:196-345
               
               
               Cow position:chr4:20600108-20599959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:196-415
               
               
               Cow position:chr4:45234699-45234917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:196-441
               
               
               Cow position:chr4:52088099-52087858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):225, 75

               
               
               Conread position:196-447
               
               
               Cow position:chr4:3837459-3837198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:196-450
               
               
               Cow position:chr4:28151701-28151442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 72

               
               
               Conread position:196-450
               
               
               Cow position:chr4:51123244-51122978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:196-451
               
               
               Cow position:chr4:40433733-40433982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):226, 36

               
               
               Conread position:196-456
               
               
               Cow position:chr4:18439403-18439651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):223, 36

               
               
               Conread position:197-424
               
               
               Cow position:chr4:44279764-44279992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):216, 74

               
               
               Conread position:197-447
               
               
               Cow position:chr4:44665200-44665445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):224, 72

               
               
               Conread position:197-447
               
               
               Cow position:chr4:51605449-51605688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):221, 14

               
               
               Conread position:197-451
               
               
               Cow position:chr4:58707003-58707261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:197-454
               
               
               Cow position:chr4:40822940-40823197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):222, 73

               
               
               Conread position:198-356
               
               
               Cow position:chr4:45115608-45115764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:198-449
               
               
               Cow position:chr4:3267699-3267940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):223, 34

               
               
               Conread position:198-451
               
               
               Cow position:chr4:6208625-6208380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):221, 9

               
               
               Conread position:198-451
               
               
               Cow position:chr4:21072984-21073230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr4:25973069-25972819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):63, 74

               
               
               Conread position:198-452
               
               
               Cow position:chr4:184458-184212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):199, 73

               
               
               Conread position:198-456
               
               
               Cow position:chr4:53752699-53752439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:199-362
               
               
               Cow position:chr4:34762166-34762325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:199-368
               
               
               Cow position:chr4:2169238-2169070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-368
               
               
               Cow position:chr4:10836346-10836179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:199-387
               
               
               Cow position:chr4:26373510-26373689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:199-420
               
               
               Cow position:chr4:31758440-31758219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-438
               
               
               Cow position:chr4:37035065-37035300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-441
               
               
               Cow position:chr4:961477-961729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:199-443
               
               
               Cow position:chr4:52226173-52225935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):218, 70

               
               
               Conread position:199-447
               
               
               Cow position:chr4:58858008-58858244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):219, 19

               
               
               Conread position:199-449
               
               
               Cow position:chr4:30671245-30671485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):209, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr4:5913176-5913426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:199-451
               
               
               Cow position:chr4:10992031-10992276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr4:23167067-23166827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr4:30131505-30131268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-454
               
               
               Cow position:chr4:12561207-12560947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:199-455
               
               
               Cow position:chr4:2610390-2610149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-455
               
               
               Cow position:chr4:19314175-19313929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:199-460
               
               
               Cow position:chr4:21065213-21064949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 217

               
               
               Conread position:199-462
               
               
               Cow position:chr4:22449352-22449609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):201, 70

               
               
               Conread position:200-368
               
               
               Cow position:chr4:18956496-18956655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-378
               
               
               Cow position:chr4:9548121-9547948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):146, 71

               
               
               Conread position:200-394
               
               
               Cow position:chr4:62412021-62411829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:200-416
               
               
               Cow position:chr4:24187433-24187656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):148, 71

               
               
               Conread position:200-424
               
               
               Cow position:chr4:1800074-1799856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):219, 60

               
               
               Conread position:200-437
               
               
               Cow position:chr4:29709591-29709832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 119

               
               
               Conread position:200-448
               
               
               Cow position:chr4:22235494-22235253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):185, 51

               
               
               Conread position:200-449
               
               
               Cow position:chr4:54146307-54146539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:200-450
               
               
               Cow position:chr4:17378677-17378913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr4:2596703-2596959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 115

               
               
               Conread position:200-451
               
               
               Cow position:chr4:19292901-19292642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 211

               
               
               Conread position:200-451
               
               
               Cow position:chr4:23758970-23758727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:200-451
               
               
               Cow position:chr4:35870372-35870124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 44

               
               
               Conread position:200-451
               
               
               Cow position:chr4:39767518-39767273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr4:45919202-45918957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:200-451
               
               
               Cow position:chr4:50769598-50769844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:200-455
               
               
               Cow position:chr4:9681478-9681220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:200-482
               
               
               Cow position:chr4:3440580-3440292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:200-523
               
               
               Cow position:chr4:63471903-63472223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:201-377
               
               
               Cow position:chr4:51433578-51433404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-417
               
               
               Cow position:chr4:38699989-38700203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:201-451
               
               
               Cow position:chr4:36945026-36945274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:201-451
               
               
               Cow position:chr4:37881099-37880854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):207, 31

               
               
               Conread position:201-451
               
               
               Cow position:chr4:44496548-44496292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:201-451
               
               
               Cow position:chr4:53616995-53616749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:201-456
               
               
               Cow position:chr4:10837214-10837468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):227, 70

               
               
               Conread position:202-417
               
               
               Cow position:chr4:24433146-24432935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:202-447
               
               
               Cow position:chr4:60031070-60030831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:202-449
               
               
               Cow position:chr4:19307421-19307184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:202-450
               
               
               Cow position:chr4:58834232-58834483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:202-451
               
               
               Cow position:chr4:5580724-5580478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):203, 8

               
               
               Conread position:204-404
               
               
               Cow position:chr4:9800167-9799974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:204-451
               
               
               Cow position:chr4:30475-30714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:207-423
               
               
               Cow position:chr4:38877929-38877710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:208-451
               
               
               Cow position:chr4:22115766-22115530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:210-441
               
               
               Cow position:chr4:65841608-65841836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:224-445
               
               
               Cow position:chr4:243376-243156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:224-454
               
               
               Cow position:chr4:20066077-20066302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):195, 38

               
               
               Conread position:226-447
               
               
               Cow position:chr4:20279470-20279256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-451
               
               
               Cow position:chr4:9199106-9198888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-451
               
               
               Cow position:chr4:14550976-14550764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):185, 42

               
               
               Conread position:230-454
               
               
               Cow position:chr4:1374497-1374281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:231-431
               
               
               Cow position:chr4:15624001-15623789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:231-451
               
               
               Cow position:chr4:27997826-27997605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:239-451
               
               
               Cow position:chr4:5002894-5002685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:240-451
               
               
               Cow position:chr4:27371734-27371941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:240-451
               
               
               Cow position:chr4:40622973-40623178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):182, 22

               
               
               Conread position:240-451
               
               
               Cow position:chr4:48283157-48283359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:241-404
               
               
               Cow position:chr4:17304265-17304426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:241-432
               
               
               Cow position:chr4:45952260-45952441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):168, 29

               
               
               Conread position:247-455
               
               
               Cow position:chr4:66547643-66547851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:250-449
               
               
               Cow position:chr4:61624467-61624664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:259-451
               
               
               Cow position:chr4:19407885-19408078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:260-443
               
               
               Cow position:chr4:13344648-13344466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:260-455
               
               
               Cow position:chr4:44782486-44782291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:261-446
               
               
               Cow position:chr4:61188759-61188943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:261-451
               
               
               Cow position:chr4:19102771-19102963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:263-451
               
               
               Cow position:chr4:13026409-13026224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:265-451
               
               
               Cow position:chr4:23495026-23494846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):154, 49

               
               
               Conread position:270-451
               
               
               Cow position:chr4:33030652-33030471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:271-451
               
               
               Cow position:chr4:13941556-13941384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:279-445
               
               
               Cow position:chr4:33395606-33395773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 12

               
               
               Conread position:280-447
               
               
               Cow position:chr4:36755830-36755667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 9

               
               
               Conread position:323-449
               
               
               Cow position:chr4:37827801-37827924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:331-459
               
               
               Cow position:chr4:11430060-11429928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:189-376
               
               
               Cow position:chr5:21356678-21356857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:191-451
               
               
               Cow position:chr5:68081769-68082024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):149, 36

               
               
               Conread position:193-407
               
               
               Cow position:chr5:63328690-63328894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:193-451
               
               
               Cow position:chr5:62639114-62638862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):226, 80

               
               
               Conread position:194-412
               
               
               Cow position:chr5:15837686-15837897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:194-456
               
               
               Cow position:chr5:7723872-7723616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:195-445
               
               
               Cow position:chr5:48178174-48178426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 74

               
               
               Conread position:196-355
               
               
               Cow position:chr5:17874311-17874153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):140, 75

               
               
               Conread position:196-471
               
               
               Cow position:chr5:24175577-24175303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):150, 64

               
               
               Conread position:197-451
               
               
               Cow position:chr5:55089347-55089094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):212, 74

               
               
               Conread position:198-350
               
               
               Cow position:chr5:33697349-33697494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:198-402
               
               
               Cow position:chr5:56385418-56385217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):142, 73

               
               
               Conread position:198-441
               
               
               Cow position:chr5:34914352-34914590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 24

               
               
               Conread position:198-447
               
               
               Cow position:chr5:67149813-67150052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):220, 71

               
               
               Conread position:198-451
               
               
               Cow position:chr5:55956134-55955862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 219

               
               
               Conread position:198-451
               
               
               Cow position:chr5:66190189-66189942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:198-456
               
               
               Cow position:chr5:40387677-40387924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:199-345
               
               
               Cow position:chr5:39134056-39134201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-352
               
               
               Cow position:chr5:5929663-5929511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:199-359
               
               
               Cow position:chr5:18695359-18695205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:199-410
               
               
               Cow position:chr5:42782525-42782730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:199-412
               
               
               Cow position:chr5:21530906-21531112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:199-420
               
               
               Cow position:chr5:6572954-6572730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:199-424
               
               
               Cow position:chr5:25681157-25681369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):222, 65

               
               
               Conread position:199-441
               
               
               Cow position:chr5:48758144-48757902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 71

               
               
               Conread position:199-445
               
               
               Cow position:chr5:36487491-36487735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 71

               
               
               Conread position:199-449
               
               
               Cow position:chr5:49567625-49567384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):223, 33

               
               
               Conread position:199-449
               
               
               Cow position:chr5:49946109-49945869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):216, 52

               
               
               Conread position:199-451
               
               
               Cow position:chr5:27411202-27411442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr5:29844484-29844234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):222, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr5:34279409-34279646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):222, 19

               
               
               Conread position:199-451
               
               
               Cow position:chr5:54090236-54089988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr5:64399207-64398968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:199-455
               
               
               Cow position:chr5:59449376-59449622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:199-455
               
               
               Cow position:chr5:68329785-68330037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:199-456
               
               
               Cow position:chr5:27102590-27102844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:200-396
               
               
               Cow position:chr5:42316712-42316899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-406
               
               
               Cow position:chr5:23527427-23527633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 72

               
               
               Conread position:200-420
               
               
               Cow position:chr5:58344061-58343843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:200-438
               
               
               Cow position:chr5:46610895-46611136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 71

               
               
               Conread position:200-439
               
               
               Cow position:chr5:21194920-21195147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):186, 71

               
               
               Conread position:200-445
               
               
               Cow position:chr5:14154345-14154111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):222, 18

               
               
               Conread position:200-445
               
               
               Cow position:chr5:15483238-15482995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 73

               
               
               Conread position:200-447
               
               
               Cow position:chr5:29756539-29756295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-447
               
               
               Cow position:chr5:40711244-40711478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):220, 71

               
               
               Conread position:200-447
               
               
               Cow position:chr5:45396210-45396452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:200-447
               
               
               Cow position:chr5:46798445-46798204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-450
               
               
               Cow position:chr5:39442499-39442250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr5:17028298-17028048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr5:23529080-23529325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr5:27419526-27419774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr5:27615715-27615470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr5:28945858-28946107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 15

               
               
               Conread position:200-451
               
               
               Cow position:chr5:39695854-39695605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr5:41598509-41598758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):202, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr5:41604826-41604580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:200-451
               
               
               Cow position:chr5:48404993-48405222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):219, 30

               
               
               Conread position:200-454
               
               
               Cow position:chr5:25899673-25899920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):220, 51

               
               
               Conread position:200-455
               
               
               Cow position:chr5:3649261-3649505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:200-455
               
               
               Cow position:chr5:47836754-47836497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:201-382
               
               
               Cow position:chr5:53145546-53145730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:201-406
               
               
               Cow position:chr5:1349591-1349794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:201-424
               
               
               Cow position:chr5:6987652-6987433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 50

               
               
               Conread position:201-447
               
               
               Cow position:chr5:28035944-28035700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:201-450
               
               
               Cow position:chr5:18276679-18276443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):220, 67

               
               
               Conread position:201-451
               
               
               Cow position:chr5:1949856-1950108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:201-451
               
               
               Cow position:chr5:56153820-56153569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:201-452
               
               
               Cow position:chr5:48573579-48573814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:201-455
               
               
               Cow position:chr5:58320269-58320518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):218, 68

               
               
               Conread position:202-410
               
               
               Cow position:chr5:47680816-47681023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:202-447
               
               
               Cow position:chr5:31660460-31660697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):225, 38

               
               
               Conread position:202-451
               
               
               Cow position:chr5:41334809-41334561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 5

               
               
               Conread position:202-455
               
               
               Cow position:chr5:34441580-34441840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:202-455
               
               
               Cow position:chr5:41946047-41945799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):225, 12

               
               
               Conread position:204-445
               
               
               Cow position:chr5:41637061-41636831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:205-451
               
               
               Cow position:chr5:39875322-39875080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:205-451
               
               
               Cow position:chr5:63188133-63188370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):214, 27

               
               
               Conread position:207-384
               
               
               Cow position:chr5:36027954-36028124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:207-418
               
               
               Cow position:chr5:30333146-30332941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:208-415
               
               
               Cow position:chr5:38717509-38717300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 143

               
               
               Conread position:217-451
               
               
               Cow position:chr5:17267706-17267939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:222-451
               
               
               Cow position:chr5:56799089-56799306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:223-451
               
               
               Cow position:chr5:4927380-4927611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:224-451
               
               
               Cow position:chr5:23536359-23536125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:224-451
               
               
               Cow position:chr5:26594920-26595151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:224-456
               
               
               Cow position:chr5:18554071-18553846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 46

               
               
               Conread position:225-451
               
               
               Cow position:chr5:54350174-54350408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:230-378
               
               
               Cow position:chr5:7432986-7433133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:231-444
               
               
               Cow position:chr5:31923545-31923334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:232-369
               
               
               Cow position:chr5:66831366-66831501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:239-451
               
               
               Cow position:chr5:6890859-6891063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:239-451
               
               
               Cow position:chr5:51503167-51502965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:240-383
               
               
               Cow position:chr5:61365694-61365553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:240-451
               
               
               Cow position:chr5:57364938-57365144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr5:60535414-60535258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:245-445
               
               
               Cow position:chr5:59303126-59303320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):174, 10

               
               
               Conread position:252-456
               
               
               Cow position:chr5:22839329-22839522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):167, 19

               
               
               Conread position:256-448
               
               
               Cow position:chr5:1687968-1688155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):163, 14

               
               
               Conread position:256-451
               
               
               Cow position:chr5:6895980-6896171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):163, 14

               
               
               Conread position:256-451
               
               
               Cow position:chr5:31561681-31561489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 12

               
               
               Conread position:259-451
               
               
               Cow position:chr5:7552269-7552463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:259-451
               
               
               Cow position:chr5:47323608-47323420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:264-455
               
               
               Cow position:chr5:60747141-60747327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:264-456
               
               
               Cow position:chr5:17869824-17869640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:271-451
               
               
               Cow position:chr5:62142809-62142629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):148, 138

               
               
               Conread position:276-456
               
               
               Cow position:chr5:21534983-21535164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:149
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:281-451
               
               
               Cow position:chr5:35209354-35209521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:290-473
               
               
               Cow position:chr5:52644966-52645149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):162, 127

               
               
               Conread position:294-451
               
               
               Cow position:chr5:36486603-36486449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:317-451
               
               
               Cow position:chr5:72173114-72172981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:331-456
               
               
               Cow position:chr5:45940536-45940664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:183-445
               
               
               Cow position:chr6:36645626-36645359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:190-451
               
               
               Cow position:chr6:51294509-51294252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):222, 21

               
               
               Conread position:191-451
               
               
               Cow position:chr6:7173529-7173783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):228, 24

               
               
               Conread position:193-436
               
               
               Cow position:chr6:2899342-2899589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):93, 78

               
               
               Conread position:194-449
               
               
               Cow position:chr6:38453559-38453802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:195-443
               
               
               Cow position:chr6:1009093-1008854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:195-445
               
               
               Cow position:chr6:24004759-24004516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:195-456
               
               
               Cow position:chr6:35436227-35435956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:196-383
               
               
               Cow position:chr6:11790196-11790009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 73

               
               
               Conread position:196-417
               
               
               Cow position:chr6:20196087-20196299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 67

               
               
               Conread position:196-427
               
               
               Cow position:chr6:23453882-23453645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:196-451
               
               
               Cow position:chr6:10487796-10487556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:196-480
               
               
               Cow position:chr6:51840506-51840217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 127

               
               
               Conread position:197-410
               
               
               Cow position:chr6:20255187-20255402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:197-411
               
               
               Cow position:chr6:26450537-26450320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:197-449
               
               
               Cow position:chr6:8317950-8318192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):203, 16

               
               
               Conread position:197-449
               
               
               Cow position:chr6:12652418-12652179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):222, 23

               
               
               Conread position:197-451
               
               
               Cow position:chr6:24583015-24583251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):222, 19

               
               
               Conread position:197-451
               
               
               Cow position:chr6:31564114-31564370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:197-451
               
               
               Cow position:chr6:36194812-36194562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):202, 34

               
               
               Conread position:197-451
               
               
               Cow position:chr6:36454376-36454622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 74

               
               
               Conread position:197-451
               
               
               Cow position:chr6:36470340-36470597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:197-456
               
               
               Cow position:chr6:37612325-37612076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):222, 72

               
               
               Conread position:198-371
               
               
               Cow position:chr6:23986247-23986414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-381
               
               
               Cow position:chr6:41687804-41687984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:198-450
               
               
               Cow position:chr6:32412423-32412660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr6:55475474-55475222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 73

               
               
               Conread position:198-454
               
               
               Cow position:chr6:38018475-38018226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):225, 72

               
               
               Conread position:198-459
               
               
               Cow position:chr6:31425341-31425600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:199-351
               
               
               Cow position:chr6:1732558-1732406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:199-371
               
               
               Cow position:chr6:47772745-47772916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:199-377
               
               
               Cow position:chr6:28165042-28164866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-378
               
               
               Cow position:chr6:49800484-49800307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:199-387
               
               
               Cow position:chr6:67248073-67247886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:199-407
               
               
               Cow position:chr6:52705362-52705566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:199-417
               
               
               Cow position:chr6:47884809-47885023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:199-422
               
               
               Cow position:chr6:1475573-1475343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 203

               
               
               Conread position:199-447
               
               
               Cow position:chr6:19259122-19259372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:199-451
               
               
               Cow position:chr6:6994741-6994985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr6:24222941-24223188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):220, 73

               
               
               Conread position:199-451
               
               
               Cow position:chr6:28810788-28811026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:199-451
               
               
               Cow position:chr6:54478933-54479183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:199-455
               
               
               Cow position:chr6:3078713-3078477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):223, 19

               
               
               Conread position:199-455
               
               
               Cow position:chr6:28083795-28084051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:199-455
               
               
               Cow position:chr6:41655819-41656080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):64, 91

               
               
               Conread position:199-456
               
               
               Cow position:chr6:24558095-24557846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):219, 63

               
               
               Conread position:199-456
               
               
               Cow position:chr6:47026694-47026442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:199-459
               
               
               Cow position:chr6:33917621-33917881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:199-460
               
               
               Cow position:chr6:24545831-24545572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-350
               
               
               Cow position:chr6:31225924-31225775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-362
               
               
               Cow position:chr6:48806797-48806953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-366
               
               
               Cow position:chr6:25224456-25224291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-379
               
               
               Cow position:chr6:15943784-15943962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:200-387
               
               
               Cow position:chr6:47192309-47192493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-389
               
               
               Cow position:chr6:28079701-28079885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-405
               
               
               Cow position:chr6:12421073-12421277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:200-422
               
               
               Cow position:chr6:46676215-46676431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:200-438
               
               
               Cow position:chr6:30701658-30701425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:200-441
               
               
               Cow position:chr6:13718981-13718741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:200-445
               
               
               Cow position:chr6:6943470-6943707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):220, 20

               
               
               Conread position:200-445
               
               
               Cow position:chr6:30160534-30160293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:200-445
               
               
               Cow position:chr6:34235197-34235439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:200-445
               
               
               Cow position:chr6:35774766-35775014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:200-449
               
               
               Cow position:chr6:827491-827736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):222, 59

               
               
               Conread position:200-449
               
               
               Cow position:chr6:4023318-4023067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):208, 69

               
               
               Conread position:200-449
               
               
               Cow position:chr6:53674077-53673832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 25

               
               
               Conread position:200-451
               
               
               Cow position:chr6:4163954-4164199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):222, 91

               
               
               Conread position:200-451
               
               
               Cow position:chr6:7824963-7824732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):219, 60

               
               
               Conread position:200-451
               
               
               Cow position:chr6:15997004-15997247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):219, 34

               
               
               Conread position:200-451
               
               
               Cow position:chr6:17090815-17090568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr6:36652634-36652388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):221, 53

               
               
               Conread position:200-451
               
               
               Cow position:chr6:56376136-56376382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr6:63196946-63197196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):218, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr6:45064800-45065052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):189, 61

               
               
               Conread position:200-456
               
               
               Cow position:chr6:54490511-54490771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:200-468
               
               
               Cow position:chr6:14658816-14658551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):172, 17

               
               
               Conread position:201-370
               
               
               Cow position:chr6:7707349-7707182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:201-406
               
               
               Cow position:chr6:28477383-28477181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:201-451
               
               
               Cow position:chr6:15782299-15782552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:201-456
               
               
               Cow position:chr6:510089-510334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:202-391
               
               
               Cow position:chr6:53939178-53938991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr6:7189898-7190150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:202-451
               
               
               Cow position:chr6:24622764-24623005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:202-451
               
               
               Cow position:chr6:45596313-45596567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:202-451
               
               
               Cow position:chr6:65873243-65873010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):220, 66

               
               
               Conread position:202-452
               
               
               Cow position:chr6:59602982-59603243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 228

               
               
               Conread position:202-455
               
               
               Cow position:chr6:17534304-17534550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:202-456
               
               
               Cow position:chr6:40437-40688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:204-450
               
               
               Cow position:chr6:34549607-34549369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):215, 24

               
               
               Conread position:204-451
               
               
               Cow position:chr6:48572670-48572914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):218, 29

               
               
               Conread position:205-451
               
               
               Cow position:chr6:20754090-20754325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:206-451
               
               
               Cow position:chr6:7119401-7119651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:207-446
               
               
               Cow position:chr6:39073923-39073697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:207-451
               
               
               Cow position:chr6:3545887-3545660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):193, 14

               
               
               Conread position:207-451
               
               
               Cow position:chr6:42618085-42617852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):214, 42

               
               
               Conread position:207-451
               
               
               Cow position:chr6:65872096-65871861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):81, 25

               
               
               Conread position:210-449
               
               
               Cow position:chr6:50034522-50034761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:222-446
               
               
               Cow position:chr6:21736689-21736914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:224-371
               
               
               Cow position:chr6:29649298-29649153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:224-414
               
               
               Cow position:chr6:60503571-60503386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:224-456
               
               
               Cow position:chr6:16733607-16733371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):174, 47

               
               
               Conread position:225-451
               
               
               Cow position:chr6:59508556-59508325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:227-378
               
               
               Cow position:chr6:28069420-28069267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:227-418
               
               
               Cow position:chr6:6161791-6161602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:227-451
               
               
               Cow position:chr6:18582624-18582841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 30

               
               
               Conread position:227-451
               
               
               Cow position:chr6:58332076-58331855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):192, 19

               
               
               Conread position:227-454
               
               
               Cow position:chr6:16626140-16625905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:230-420
               
               
               Cow position:chr6:64427411-64427221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):182, 41

               
               
               Conread position:232-447
               
               
               Cow position:chr6:57118758-57118966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:239-408
               
               
               Cow position:chr6:59496396-59496229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):145, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr6:44371763-44371977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr6:59588231-59588437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:240-450
               
               
               Cow position:chr6:16675987-16675772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 209

               
               
               Conread position:241-449
               
               
               Cow position:chr6:9454458-9454261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):179, 8

               
               
               Conread position:243-451
               
               
               Cow position:chr6:54062839-54062631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:244-467
               
               
               Cow position:chr6:47858456-47858241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 27

               
               
               Conread position:246-451
               
               
               Cow position:chr6:47326909-47327096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):147, 21

               
               
               Conread position:248-450
               
               
               Cow position:chr6:30474490-30474293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:249-471
               
               
               Cow position:chr6:33929378-33929604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):6, 23

               
               
               Conread position:251-410
               
               
               Cow position:chr6:2583025-2582868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:254-452
               
               
               Cow position:chr6:51387912-51387718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:256-451
               
               
               Cow position:chr6:7836075-7835885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:259-451
               
               
               Cow position:chr6:47339196-47339388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:260-451
               
               
               Cow position:chr6:37149348-37149157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:260-454
               
               
               Cow position:chr6:19292962-19292763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 176

               
               
               Conread position:261-452
               
               
               Cow position:chr6:44511392-44511212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:261-468
               
               
               Cow position:chr6:582115-582323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:264-435
               
               
               Cow position:chr6:50317891-50318056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:269-452
               
               
               Cow position:chr6:61142414-61142596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:293-451
               
               
               Cow position:chr6:59633261-59633103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:298-449
               
               
               Cow position:chr6:11789508-11789358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:298-449
               
               
               Cow position:chr6:35415396-35415547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:321-451
               
               
               Cow position:chr6:52556383-52556506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:139-441
               
               
               Cow position:chr7:48012839-48012541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):153, 132

               
               
               Conread position:183-447
               
               
               Cow position:chr7:8786351-8786607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):235, 28

               
               
               Conread position:192-392
               
               
               Cow position:chr7:67111692-67111885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:193-451
               
               
               Cow position:chr7:19948430-19948681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):228, 35

               
               
               Conread position:195-447
               
               
               Cow position:chr7:45747633-45747869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 64

               
               
               Conread position:195-451
               
               
               Cow position:chr7:68522623-68522874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):210, 9

               
               
               Conread position:195-452
               
               
               Cow position:chr7:19981626-19981874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 68

               
               
               Conread position:195-456
               
               
               Cow position:chr7:46103743-46103490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):163, 23

               
               
               Conread position:196-377
               
               
               Cow position:chr7:45748817-45748993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:196-443
               
               
               Cow position:chr7:12424769-12424522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 74

               
               
               Conread position:196-455
               
               
               Cow position:chr7:21197164-21197414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):226, 23

               
               
               Conread position:197-338
               
               
               Cow position:chr7:40140282-40140144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:197-446
               
               
               Cow position:chr7:19466018-19466274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:197-449
               
               
               Cow position:chr7:12754934-12755176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:197-451
               
               
               Cow position:chr7:34214813-34214566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:197-451
               
               
               Cow position:chr7:58490299-58490046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):204, 21

               
               
               Conread position:198-399
               
               
               Cow position:chr7:30404357-30404546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:198-421
               
               
               Cow position:chr7:59246171-59245955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr7:19880825-19881073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):221, 62

               
               
               Conread position:198-451
               
               
               Cow position:chr7:20537594-20537334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:198-451
               
               
               Cow position:chr7:43234224-43234470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:198-451
               
               
               Cow position:chr7:57537299-57537554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):101, 73

               
               
               Conread position:199-340
               
               
               Cow position:chr7:5221069-5220931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:199-345
               
               
               Cow position:chr7:66206809-66206665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-373
               
               
               Cow position:chr7:22802506-22802675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:199-403
               
               
               Cow position:chr7:20080855-20081058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):173, 72

               
               
               Conread position:199-405
               
               
               Cow position:chr7:25914271-25914471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:199-410
               
               
               Cow position:chr7:39603542-39603335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:199-424
               
               
               Cow position:chr7:56058606-56058391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:199-431
               
               
               Cow position:chr7:41728161-41727942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):223, 72

               
               
               Conread position:199-432
               
               
               Cow position:chr7:23057295-23057525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:199-444
               
               
               Cow position:chr7:37906139-37906379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:199-451
               
               
               Cow position:chr7:20628-20378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr7:22981558-22981307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr7:25014911-25015147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:199-451
               
               
               Cow position:chr7:25023249-25023485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:199-451
               
               
               Cow position:chr7:26195588-26195831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):220, 33

               
               
               Conread position:199-451
               
               
               Cow position:chr7:51321951-51321708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr7:68088844-68088600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:199-455
               
               
               Cow position:chr7:26907821-26908066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):223, 54

               
               
               Conread position:199-455
               
               
               Cow position:chr7:53743681-53743931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-456
               
               
               Cow position:chr7:20918125-20918387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):86, 92

               
               
               Conread position:199-456
               
               
               Cow position:chr7:23131814-23131564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:200-376
               
               
               Cow position:chr7:10345249-10345419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-410
               
               
               Cow position:chr7:37445083-37444876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-448
               
               
               Cow position:chr7:25684831-25685068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):220, 20

               
               
               Conread position:200-449
               
               
               Cow position:chr7:4512601-4512841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:200-449
               
               
               Cow position:chr7:25104588-25104339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):182, 24

               
               
               Conread position:200-450
               
               
               Cow position:chr7:58170961-58170711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:200-451
               
               
               Cow position:chr7:19399463-19399708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):141, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr7:23251347-23251591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:200-451
               
               
               Cow position:chr7:25445617-25445366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:200-451
               
               
               Cow position:chr7:27387758-27388007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):212, 52

               
               
               Conread position:200-451
               
               
               Cow position:chr7:40192967-40192718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:200-451
               
               
               Cow position:chr7:52536033-52536285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:200-451
               
               
               Cow position:chr7:53985784-53986023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:200-451
               
               
               Cow position:chr7:64003680-64003434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 149

               
               
               Conread position:200-453
               
               
               Cow position:chr7:65461051-65460809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):218, 70

               
               
               Conread position:200-455
               
               
               Cow position:chr7:44049159-44049404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):94, 59

               
               
               Conread position:200-456
               
               
               Cow position:chr7:1732985-1733230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:200-456
               
               
               Cow position:chr7:43215732-43215474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:201-399
               
               
               Cow position:chr7:13587398-13587203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:201-451
               
               
               Cow position:chr7:19051117-19051351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:202-448
               
               
               Cow position:chr7:57577086-57577329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:202-451
               
               
               Cow position:chr7:24667601-24667355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:202-451
               
               
               Cow position:chr7:67839559-67839312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:202-456
               
               
               Cow position:chr7:31315536-31315279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:202-456
               
               
               Cow position:chr7:47172494-47172742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:203-342
               
               
               Cow position:chr7:48443336-48443473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:203-449
               
               
               Cow position:chr7:10099145-10099388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):211, 136

               
               
               Conread position:204-382
               
               
               Cow position:chr7:62610506-62610329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:204-437
               
               
               Cow position:chr7:1262243-1262012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:205-410
               
               
               Cow position:chr7:12233239-12233029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:206-451
               
               
               Cow position:chr7:8073889-8074131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):212, 26

               
               
               Conread position:207-438
               
               
               Cow position:chr7:26466953-26466729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):211, 64

               
               
               Conread position:213-451
               
               
               Cow position:chr7:51633103-51632874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:215-372
               
               
               Cow position:chr7:59713920-59713766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:215-404
               
               
               Cow position:chr7:664051-664236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:215-451
               
               
               Cow position:chr7:34412075-34412302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:216-451
               
               
               Cow position:chr7:57260048-57260275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):206, 55

               
               
               Conread position:219-451
               
               
               Cow position:chr7:21545168-21545393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:222-408
               
               
               Cow position:chr7:17922475-17922295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:222-452
               
               
               Cow position:chr7:68956868-68956645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):194, 11

               
               
               Conread position:223-455
               
               
               Cow position:chr7:1350161-1350390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):175, 48

               
               
               Conread position:224-384
               
               
               Cow position:chr7:3748733-3748890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:224-448
               
               
               Cow position:chr7:53005543-53005329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr7:67820306-67820086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:224-456
               
               
               Cow position:chr7:68516497-68516720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:225-451
               
               
               Cow position:chr7:57311810-57311595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr7:14044164-14043979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:228-451
               
               
               Cow position:chr7:36830842-36830627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:230-451
               
               
               Cow position:chr7:45956118-45955898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:232-420
               
               
               Cow position:chr7:47874802-47874982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:239-431
               
               
               Cow position:chr7:48648447-48648632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:239-435
               
               
               Cow position:chr7:33772795-33772603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):181, 17

               
               
               Conread position:239-451
               
               
               Cow position:chr7:52751715-52751927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:239-523
               
               
               Cow position:chr7:34441008-34441289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:240-420
               
               
               Cow position:chr7:60961182-60961009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:240-454
               
               
               Cow position:chr7:17816932-17816718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 170

               
               
               Conread position:243-451
               
               
               Cow position:chr7:23177715-23177507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:244-440
               
               
               Cow position:chr7:11872430-11872624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):174, 27

               
               
               Conread position:244-456
               
               
               Cow position:chr7:7507724-7507520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:247-455
               
               
               Cow position:chr7:62102765-62102562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:250-451
               
               
               Cow position:chr7:47771736-47771543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):168, 20

               
               
               Conread position:255-445
               
               
               Cow position:chr7:12413149-12413334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:256-451
               
               
               Cow position:chr7:48547699-48547890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):163, 12

               
               
               Conread position:260-441
               
               
               Cow position:chr7:39129448-39129627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:260-445
               
               
               Cow position:chr7:24461112-24460934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:260-451
               
               
               Cow position:chr7:29505276-29505084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:281-451
               
               
               Cow position:chr7:46327629-46327794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 38

               
               
               Conread position:285-451
               
               
               Cow position:chr7:20147204-20147367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:286-451
               
               
               Cow position:chr7:51917752-51917915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:289-446
               
               
               Cow position:chr7:10896807-10896961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:289-456
               
               
               Cow position:chr7:65156927-65157088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:293-451
               
               
               Cow position:chr7:49370978-49371135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:296-459
               
               
               Cow position:chr7:7313862-7313700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:311-451
               
               
               Cow position:chr7:25703114-25703255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:319-451
               
               
               Cow position:chr7:40758136-40758264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:349-455
               
               
               Cow position:chr7:48443693-48443799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 70

               
               
               Conread position:184-449
               
               
               Cow position:chr8:11896402-11896155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:189-437
               
               
               Cow position:chr8:55829150-55829395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 43

               
               
               Conread position:189-451
               
               
               Cow position:chr8:51361766-51361497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:190-357
               
               
               Cow position:chr8:33288196-33288026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:191-353
               
               
               Cow position:chr8:18175809-18175968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):144, 60

               
               
               Conread position:192-449
               
               
               Cow position:chr8:25075788-25075537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):229, 79

               
               
               Conread position:192-451
               
               
               Cow position:chr8:18057944-18057691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:195-439
               
               
               Cow position:chr8:41318228-41317990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):224, 76

               
               
               Conread position:195-451
               
               
               Cow position:chr8:36505567-36505317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):224, 76

               
               
               Conread position:195-456
               
               
               Cow position:chr8:26229139-26228888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):162, 25

               
               
               Conread position:196-410
               
               
               Cow position:chr8:31645830-31646040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):84, 73

               
               
               Conread position:196-445
               
               
               Cow position:chr8:36375312-36375570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 208

               
               
               Conread position:196-451
               
               
               Cow position:chr8:13738700-13738440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:196-451
               
               
               Cow position:chr8:31690995-31690746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):180, 69

               
               
               Conread position:196-455
               
               
               Cow position:chr8:55305273-55305015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 74

               
               
               Conread position:197-377
               
               
               Cow position:chr8:13900590-13900414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:197-404
               
               
               Cow position:chr8:43803742-43803536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:197-407
               
               
               Cow position:chr8:15686211-15686421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:197-420
               
               
               Cow position:chr8:46850171-46850394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):158, 76

               
               
               Conread position:197-451
               
               
               Cow position:chr8:59656005-59656248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:197-454
               
               
               Cow position:chr8:27682114-27681875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:197-456
               
               
               Cow position:chr8:6723620-6723867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):165, 53

               
               
               Conread position:198-451
               
               
               Cow position:chr8:943000-942752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr8:20052730-20052981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):145, 116

               
               
               Conread position:198-451
               
               
               Cow position:chr8:37487108-37487361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):209, 73

               
               
               Conread position:198-451
               
               
               Cow position:chr8:39845813-39845559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:198-451
               
               
               Cow position:chr8:51904849-51905103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):117, 73

               
               
               Conread position:198-456
               
               
               Cow position:chr8:20657172-20657428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:198-456
               
               
               Cow position:chr8:21137093-21137335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):223, 32

               
               
               Conread position:198-456
               
               
               Cow position:chr8:59506892-59507144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:199-378
               
               
               Cow position:chr8:23030818-23030647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:199-391
               
               
               Cow position:chr8:53360043-53360241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:199-406
               
               
               Cow position:chr8:46834375-46834578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:199-408
               
               
               Cow position:chr8:42846523-42846727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 72

               
               
               Conread position:199-412
               
               
               Cow position:chr8:17063902-17064105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:199-430
               
               
               Cow position:chr8:39017893-39017662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):201, 70

               
               
               Conread position:199-444
               
               
               Cow position:chr8:9583356-9583597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 33

               
               
               Conread position:199-449
               
               
               Cow position:chr8:21282245-21282009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):169, 70

               
               
               Conread position:199-449
               
               
               Cow position:chr8:28221380-28221622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):221, 33

               
               
               Conread position:199-450
               
               
               Cow position:chr8:32277840-32278077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):221, 12

               
               
               Conread position:199-451
               
               
               Cow position:chr8:1107004-1107252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):221, 32

               
               
               Conread position:199-451
               
               
               Cow position:chr8:9236359-9236600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):145, 31

               
               
               Conread position:199-451
               
               
               Cow position:chr8:15536809-15537060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr8:19171431-19171683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):162, 19

               
               
               Conread position:199-451
               
               
               Cow position:chr8:20892516-20892278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:199-451
               
               
               Cow position:chr8:49265114-49265366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:199-451
               
               
               Cow position:chr8:57218999-57218745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:199-454
               
               
               Cow position:chr8:13813234-13813488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):228, 72

               
               
               Conread position:199-456
               
               
               Cow position:chr8:32827492-32827741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):223, 21

               
               
               Conread position:199-456
               
               
               Cow position:chr8:43027467-43027721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):194, 87

               
               
               Conread position:200-318
               
               
               Cow position:chr8:54195987-54195868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:200-368
               
               
               Cow position:chr8:60949555-60949722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-371
               
               
               Cow position:chr8:49577114-49576951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-378
               
               
               Cow position:chr8:36471727-36471556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-391
               
               
               Cow position:chr8:11594225-11594035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:200-411
               
               
               Cow position:chr8:37123153-37122943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:200-413
               
               
               Cow position:chr8:29965052-29964832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:200-432
               
               
               Cow position:chr8:57388118-57387893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):219, 16

               
               
               Conread position:200-447
               
               
               Cow position:chr8:46203453-46203211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):224, 62

               
               
               Conread position:200-450
               
               
               Cow position:chr8:8134313-8134561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:200-451
               
               
               Cow position:chr8:26451311-26451061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:200-451
               
               
               Cow position:chr8:27053418-27053659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):218, 18

               
               
               Conread position:200-451
               
               
               Cow position:chr8:29414075-29413829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 20

               
               
               Conread position:200-451
               
               
               Cow position:chr8:33218765-33219017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:200-451
               
               
               Cow position:chr8:35218553-35218310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr8:51695197-51695445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-456
               
               
               Cow position:chr8:33510433-33510681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 6

               
               
               Conread position:201-407
               
               
               Cow position:chr8:44568996-44568783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:201-445
               
               
               Cow position:chr8:43112646-43112898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 204

               
               
               Conread position:201-447
               
               
               Cow position:chr8:9130741-9130986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:201-448
               
               
               Cow position:chr8:13221669-13221913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:201-451
               
               
               Cow position:chr8:23161136-23160889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):183, 68

               
               
               Conread position:201-451
               
               
               Cow position:chr8:29936104-29935854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):150, 70

               
               
               Conread position:201-451
               
               
               Cow position:chr8:53866287-53866049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):221, 117

               
               
               Conread position:201-456
               
               
               Cow position:chr8:60455382-60455124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 154

               
               
               Conread position:202-406
               
               
               Cow position:chr8:24426839-24426638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:202-438
               
               
               Cow position:chr8:27294910-27294679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):217, 19

               
               
               Conread position:202-450
               
               
               Cow position:chr8:20682583-20682339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:202-456
               
               
               Cow position:chr8:51959223-51959466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):217, 69

               
               
               Conread position:204-380
               
               
               Cow position:chr8:61216651-61216826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:204-454
               
               
               Cow position:chr8:6468983-6469229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):215, 66

               
               
               Conread position:205-451
               
               
               Cow position:chr8:9811983-9811738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):213, 69

               
               
               Conread position:205-451
               
               
               Cow position:chr8:34317890-34318136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:205-454
               
               
               Cow position:chr8:17078004-17077761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:206-355
               
               
               Cow position:chr8:36274150-36274298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:207-428
               
               
               Cow position:chr8:15803470-15803677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:207-456
               
               
               Cow position:chr8:13976070-13975827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):212, 61

               
               
               Conread position:208-451
               
               
               Cow position:chr8:26922800-26922560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):176, 24

               
               
               Conread position:208-451
               
               
               Cow position:chr8:43693387-43693151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:208-454
               
               
               Cow position:chr8:7367300-7367540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:209-451
               
               
               Cow position:chr8:35520212-35519969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):196, 62

               
               
               Conread position:210-451
               
               
               Cow position:chr8:18033743-18033985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:217-451
               
               
               Cow position:chr8:42575858-42575637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:222-457
               
               
               Cow position:chr8:39967642-39967859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:223-449
               
               
               Cow position:chr8:32983937-32984162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:224-410
               
               
               Cow position:chr8:45586260-45586439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:224-445
               
               
               Cow position:chr8:50266453-50266231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:225-437
               
               
               Cow position:chr8:13810364-13810156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):190, 45

               
               
               Conread position:225-456
               
               
               Cow position:chr8:39985575-39985806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:226-446
               
               
               Cow position:chr8:2163741-2163957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:226-451
               
               
               Cow position:chr8:60320678-60320459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):193, 42

               
               
               Conread position:227-430
               
               
               Cow position:chr8:20832163-20832365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):161, 43

               
               
               Conread position:230-449
               
               
               Cow position:chr8:49599767-49599983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):184, 40

               
               
               Conread position:239-407
               
               
               Cow position:chr8:25573188-25573025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-449
               
               
               Cow position:chr8:39969671-39969881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 52

               
               
               Conread position:239-450
               
               
               Cow position:chr8:7671487-7671293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr8:8901837-8902030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:239-451
               
               
               Cow position:chr8:11783131-11782921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:240-412
               
               
               Cow position:chr8:10846392-10846216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:241-466
               
               
               Cow position:chr8:45987653-45987874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:242-408
               
               
               Cow position:chr8:5700135-5700297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:245-451
               
               
               Cow position:chr8:33842897-33842693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):178, 29

               
               
               Conread position:246-396
               
               
               Cow position:chr8:40371263-40371408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:250-451
               
               
               Cow position:chr8:25871864-25871667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:260-451
               
               
               Cow position:chr8:21911766-21911578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:260-451
               
               
               Cow position:chr8:39174112-39174306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:264-451
               
               
               Cow position:chr8:8011028-8010839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:269-451
               
               
               Cow position:chr8:1394354-1394168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):7, 137

               
               
               Conread position:273-445
               
               
               Cow position:chr8:11942680-11942513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:273-451
               
               
               Cow position:chr8:20837236-20837065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:282-451
               
               
               Cow position:chr8:10042757-10042592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):141, 5

               
               
               Conread position:289-451
               
               
               Cow position:chr8:30136015-30135860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:293-451
               
               
               Cow position:chr8:20684068-20683910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 119

               
               
               Conread position:293-451
               
               
               Cow position:chr8:24237847-24237692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:293-455
               
               
               Cow position:chr8:34113525-34113367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:294-451
               
               
               Cow position:chr8:31313995-31313836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:298-451
               
               
               Cow position:chr8:11526554-11526404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:313-451
               
               
               Cow position:chr8:19512385-19512524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 82

               
               
               Conread position:330-442
               
               
               Cow position:chr8:20673721-20673834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:186-451
               
               
               Cow position:chr9:15033747-15034004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:187-451
               
               
               Cow position:chr9:5172173-5172432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):231, 56

               
               
               Conread position:188-450
               
               
               Cow position:chr9:15684946-15684686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):230, 82

               
               
               Conread position:188-455
               
               
               Cow position:chr9:14184511-14184768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):231, 69

               
               
               Conread position:189-428
               
               
               Cow position:chr9:38926931-38927158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):230, 54

               
               
               Conread position:193-424
               
               
               Cow position:chr9:24837387-24837611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:194-387
               
               
               Cow position:chr9:5828917-5829102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:194-407
               
               
               Cow position:chr9:4580556-4580346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:194-449
               
               
               Cow position:chr9:25468902-25469137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:195-400
               
               
               Cow position:chr9:53794680-53794481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:195-428
               
               
               Cow position:chr9:55562344-55562579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:195-451
               
               
               Cow position:chr9:54206481-54206224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:196-451
               
               
               Cow position:chr9:16745530-16745775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):162, 52

               
               
               Conread position:196-451
               
               
               Cow position:chr9:59924400-59924643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):226, 75

               
               
               Conread position:196-454
               
               
               Cow position:chr9:46252672-46252915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:197-410
               
               
               Cow position:chr9:32115749-32115540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:197-410
               
               
               Cow position:chr9:47930962-47931170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:197-451
               
               
               Cow position:chr9:20039279-20039038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):210, 63

               
               
               Conread position:197-451
               
               
               Cow position:chr9:41679593-41679845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:197-523
               
               
               Cow position:chr9:33059422-33059110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):237, 72

               
               
               Conread position:198-418
               
               
               Cow position:chr9:24429245-24429027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:198-437
               
               
               Cow position:chr9:43911784-43912016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):175, 66

               
               
               Conread position:198-451
               
               
               Cow position:chr9:19902924-19903179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:198-451
               
               
               Cow position:chr9:34203980-34204231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:198-455
               
               
               Cow position:chr9:28983032-28983288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:198-456
               
               
               Cow position:chr9:4861228-4861492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:198-456
               
               
               Cow position:chr9:33668576-33668834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:198-462
               
               
               Cow position:chr9:29819558-29819826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:199-346
               
               
               Cow position:chr9:21566759-21566614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:199-377
               
               
               Cow position:chr9:27052783-27052608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:199-388
               
               
               Cow position:chr9:38580710-38580894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):174, 22

               
               
               Conread position:199-417
               
               
               Cow position:chr9:12498862-12499077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:199-445
               
               
               Cow position:chr9:19382183-19382422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:199-445
               
               
               Cow position:chr9:26645772-26646022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):156, 99

               
               
               Conread position:199-449
               
               
               Cow position:chr9:5575170-5575416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:199-451
               
               
               Cow position:chr9:5340469-5340705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):208, 34

               
               
               Conread position:199-451
               
               
               Cow position:chr9:9315162-9315408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr9:18111009-18110767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:199-451
               
               
               Cow position:chr9:34309880-34310126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:199-451
               
               
               Cow position:chr9:43037334-43037585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):221, 71

               
               
               Conread position:199-454
               
               
               Cow position:chr9:37099372-37099129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:199-455
               
               
               Cow position:chr9:5500697-5500961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:199-455
               
               
               Cow position:chr9:23042632-23042880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:200-331
               
               
               Cow position:chr9:28382521-28382390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:200-355
               
               
               Cow position:chr9:34431673-34431826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:200-359
               
               
               Cow position:chr9:62331145-62330988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-374
               
               
               Cow position:chr9:60549560-60549386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):158, 72

               
               
               Conread position:200-391
               
               
               Cow position:chr9:35708766-35708581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-407
               
               
               Cow position:chr9:20839481-20839681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-445
               
               
               Cow position:chr9:2887827-2888077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:200-446
               
               
               Cow position:chr9:5398988-5399232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:200-451
               
               
               Cow position:chr9:5433479-5433737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr9:29808309-29808556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:200-451
               
               
               Cow position:chr9:32266533-32266297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:200-451
               
               
               Cow position:chr9:39152827-39152579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):209, 71

               
               
               Conread position:200-451
               
               
               Cow position:chr9:42037506-42037755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):183, 60

               
               
               Conread position:200-451
               
               
               Cow position:chr9:50544783-50544528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):169, 55

               
               
               Conread position:200-452
               
               
               Cow position:chr9:4539006-4538756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 70

               
               
               Conread position:200-453
               
               
               Cow position:chr9:49651584-49651827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):219, 35

               
               
               Conread position:200-456
               
               
               Cow position:chr9:39428947-39428692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 72

               
               
               Conread position:201-400
               
               
               Cow position:chr9:26559760-26559561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:201-437
               
               
               Cow position:chr9:20896754-20896989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:201-448
               
               
               Cow position:chr9:27292422-27292179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:201-451
               
               
               Cow position:chr9:19637784-19637536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 67

               
               
               Conread position:201-451
               
               
               Cow position:chr9:54437113-54437365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:202-451
               
               
               Cow position:chr9:9823645-9823406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):217, 9

               
               
               Conread position:202-451
               
               
               Cow position:chr9:10667166-10666926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:202-451
               
               
               Cow position:chr9:56860871-56861107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):214, 59

               
               
               Conread position:203-437
               
               
               Cow position:chr9:8599462-8599689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):219, 66

               
               
               Conread position:204-447
               
               
               Cow position:chr9:15006890-15006654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):213, 28

               
               
               Conread position:204-449
               
               
               Cow position:chr9:8657574-8657334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):223, 67

               
               
               Conread position:206-454
               
               
               Cow position:chr9:34468719-34468479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:208-447
               
               
               Cow position:chr9:25400345-25400101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:213-455
               
               
               Cow position:chr9:10127801-10127569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:215-451
               
               
               Cow position:chr9:8950764-8951006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:216-450
               
               
               Cow position:chr9:32817273-32817040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):203, 55

               
               
               Conread position:220-451
               
               
               Cow position:chr9:16118601-16118826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):202, 51

               
               
               Conread position:223-391
               
               
               Cow position:chr9:59761758-59761591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):160, 48

               
               
               Conread position:223-427
               
               
               Cow position:chr9:5059439-5059243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):196, 46

               
               
               Conread position:223-456
               
               
               Cow position:chr9:41957682-41957910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):196, 51

               
               
               Conread position:224-410
               
               
               Cow position:chr9:11102923-11102743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:224-451
               
               
               Cow position:chr9:50598436-50598216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):195, 46

               
               
               Conread position:225-383
               
               
               Cow position:chr9:6214271-6214120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:227-447
               
               
               Cow position:chr9:1867327-1867545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:230-451
               
               
               Cow position:chr9:47925806-47926026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:230-455
               
               
               Cow position:chr9:3958952-3959164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-454
               
               
               Cow position:chr9:9200837-9200621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:239-449
               
               
               Cow position:chr9:50828030-50827834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:239-451
               
               
               Cow position:chr9:34106605-34106821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:239-451
               
               
               Cow position:chr9:34725618-34725411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):181, 32

               
               
               Conread position:239-451
               
               
               Cow position:chr9:38546310-38546514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 32

               
               
               Conread position:239-456
               
               
               Cow position:chr9:23943157-23943387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:240-419
               
               
               Cow position:chr9:64007988-64007816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:241-395
               
               
               Cow position:chr9:2863338-2863489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr9:4858431-4858636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:243-439
               
               
               Cow position:chr9:5110754-5110947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:243-451
               
               
               Cow position:chr9:3931858-3932061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):175, 27

               
               
               Conread position:243-455
               
               
               Cow position:chr9:21462970-21462763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):176, 28

               
               
               Conread position:246-451
               
               
               Cow position:chr9:8337922-8338128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:246-451
               
               
               Cow position:chr9:41282914-41283113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:249-443
               
               
               Cow position:chr9:20200194-20200385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:249-445
               
               
               Cow position:chr9:2114105-2113911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:251-468
               
               
               Cow position:chr9:25972412-25972617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:256-440
               
               
               Cow position:chr9:11870115-11870303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:258-445
               
               
               Cow position:chr9:54924528-54924715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:260-437
               
               
               Cow position:chr9:59386859-59386683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:263-451
               
               
               Cow position:chr9:9753476-9753294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:265-410
               
               
               Cow position:chr9:41958869-41958724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):143, 24

               
               
               Conread position:271-411
               
               
               Cow position:chr9:58204595-58204735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):118, 131

               
               
               Conread position:276-448
               
               
               Cow position:chr9:11201517-11201689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):145, 41

               
               
               Conread position:276-451
               
               
               Cow position:chr9:11363824-11363994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):145, 26

               
               
               Conread position:276-451
               
               
               Cow position:chr9:32624935-32625107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 41

               
               
               Conread position:277-445
               
               
               Cow position:chr9:44552675-44552835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:279-451
               
               
               Cow position:chr9:52633560-52633396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):139, 42

               
               
               Conread position:280-447
               
               
               Cow position:chr9:214529-214367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:314-451
               
               
               Cow position:chr9:5029474-5029612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:166-451
               
               
               Cow position:chrX:15329881-15329602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:183-451
               
               
               Cow position:chrX:20377184-20376924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):235, 87

               
               
               Conread position:183-454
               
               
               Cow position:chrX:18142239-18142502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):237, 37

               
               
               Conread position:184-443
               
               
               Cow position:chrX:3154030-3154283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:188-443
               
               
               Cow position:chrX:48089188-48089441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):73, 84

               
               
               Conread position:189-446
               
               
               Cow position:chrX:35759718-35759978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:189-447
               
               
               Cow position:chrX:25338399-25338145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 38

               
               
               Conread position:192-350
               
               
               Cow position:chrX:5046702-5046861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:193-427
               
               
               Cow position:chrX:48428724-48428484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):148, 76

               
               
               Conread position:193-476
               
               
               Cow position:chrX:8918044-8917773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):208, 78

               
               
               Conread position:194-403
               
               
               Cow position:chrX:159551-159753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:194-407
               
               
               Cow position:chrX:35278540-35278325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:194-418
               
               
               Cow position:chrX:31260395-31260632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:195-350
               
               
               Cow position:chrX:1727762-1727916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:195-445
               
               
               Cow position:chrX:25388043-25388276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):244, 40

               
               
               Conread position:195-451
               
               
               Cow position:chrX:7497442-7497196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:195-451
               
               
               Cow position:chrX:19930852-19930607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):225, 74

               
               
               Conread position:195-455
               
               
               Cow position:chrX:40692543-40692801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):220, 75

               
               
               Conread position:195-455
               
               
               Cow position:chrX:42011490-42011231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):226, 76

               
               
               Conread position:196-355
               
               
               Cow position:chrX:488883-488729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:196-451
               
               
               Cow position:chrX:33802800-33803050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):226, 75

               
               
               Conread position:197-372
               
               
               Cow position:chrX:17952769-17952943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):148, 72

               
               
               Conread position:197-389
               
               
               Cow position:chrX:12304767-12304577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:198-355
               
               
               Cow position:chrX:37186365-37186212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:198-376
               
               
               Cow position:chrX:16291812-16291990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:198-407
               
               
               Cow position:chrX:8780249-8780043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:198-407
               
               
               Cow position:chrX:38722323-38722119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:198-447
               
               
               Cow position:chrX:41732997-41733247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):167, 22

               
               
               Conread position:198-449
               
               
               Cow position:chrX:27771372-27771617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):221, 95

               
               
               Conread position:198-451
               
               
               Cow position:chrX:34355770-34356011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):224, 60

               
               
               Conread position:198-454
               
               
               Cow position:chrX:1499880-1499618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 207

               
               
               Conread position:199-351
               
               
               Cow position:chrX:30483805-30483955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:199-354
               
               
               Cow position:chrX:31273407-31273253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:199-445
               
               
               Cow position:chrX:15305091-15305340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 70

               
               
               Conread position:199-449
               
               
               Cow position:chrX:18286878-18287121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):222, 44

               
               
               Conread position:199-449
               
               
               Cow position:chrX:27287534-27287777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:199-450
               
               
               Cow position:chrX:7425670-7425426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:199-451
               
               
               Cow position:chrX:1615833-1616088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:199-451
               
               
               Cow position:chrX:2786360-2786602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):221, 21

               
               
               Conread position:199-451
               
               
               Cow position:chrX:9539524-9539280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):223, 33

               
               
               Conread position:199-451
               
               
               Cow position:chrX:16514070-16514308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):220, 67

               
               
               Conread position:199-451
               
               
               Cow position:chrX:36009711-36009956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):222, 21

               
               
               Conread position:199-451
               
               
               Cow position:chrX:39415165-39415412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 28

               
               
               Conread position:199-451
               
               
               Cow position:chrX:46072605-46072864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:199-451
               
               
               Cow position:chrX:46084177-46083928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):141, 72

               
               
               Conread position:199-454
               
               
               Cow position:chrX:1503532-1503289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:199-454
               
               
               Cow position:chrX:9839426-9839179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):223, 33

               
               
               Conread position:200-336
               
               
               Cow position:chrX:29675703-29675568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 87

               
               
               Conread position:200-355
               
               
               Cow position:chrX:18417101-18417254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:200-368
               
               
               Cow position:chrX:10289423-10289589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:200-371
               
               
               Cow position:chrX:6677030-6676860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:200-377
               
               
               Cow position:chrX:28835555-28835734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:200-410
               
               
               Cow position:chrX:41084120-41083910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:200-443
               
               
               Cow position:chrX:17964322-17964554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:200-451
               
               
               Cow position:chrX:10959192-10959441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):221, 62

               
               
               Conread position:200-451
               
               
               Cow position:chrX:17542165-17541914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:200-451
               
               
               Cow position:chrX:18456604-18456357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:200-451
               
               
               Cow position:chrX:19678076-19678310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):221, 20

               
               
               Conread position:200-451
               
               
               Cow position:chrX:21664521-21664766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:200-451
               
               
               Cow position:chrX:22624684-22624429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:200-451
               
               
               Cow position:chrX:25713999-25713750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:200-451
               
               
               Cow position:chrX:32431823-32431577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):221, 13

               
               
               Conread position:200-451
               
               
               Cow position:chrX:38964321-38964061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:200-451
               
               
               Cow position:chrX:39000052-38999811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:200-451
               
               
               Cow position:chrX:39352996-39352736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:200-451
               
               
               Cow position:chrX:40789407-40789165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):222, 71

               
               
               Conread position:200-454
               
               
               Cow position:chrX:6203745-6203496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:200-455
               
               
               Cow position:chrX:8925904-8925653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:200-456
               
               
               Cow position:chrX:6563721-6563472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):223, 32

               
               
               Conread position:201-406
               
               
               Cow position:chrX:27276900-27276694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:201-412
               
               
               Cow position:chrX:29874169-29874377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:201-446
               
               
               Cow position:chrX:31442616-31442870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:201-448
               
               
               Cow position:chrX:15049685-15049452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):220, 19

               
               
               Conread position:201-449
               
               
               Cow position:chrX:6041011-6041254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 19

               
               
               Conread position:201-450
               
               
               Cow position:chrX:32310305-32310060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 38

               
               
               Conread position:201-451
               
               
               Cow position:chrX:6674712-6674962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:201-451
               
               
               Cow position:chrX:43426493-43426248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):220, 19

               
               
               Conread position:201-454
               
               
               Cow position:chrX:7646459-7646206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 68

               
               
               Conread position:201-456
               
               
               Cow position:chrX:29121244-29120997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:202-449
               
               
               Cow position:chrX:29761481-29761731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):7, 69

               
               
               Conread position:202-456
               
               
               Cow position:chrX:23414174-23414420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):215, 69

               
               
               Conread position:203-451
               
               
               Cow position:chrX:47178343-47178111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:205-414
               
               
               Cow position:chrX:23179083-23179288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:208-451
               
               
               Cow position:chrX:29407828-29408069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):210, 25

               
               
               Conread position:208-501
               
               
               Cow position:chrX:15233072-15233360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:213-449
               
               
               Cow position:chrX:31340901-31340667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:215-420
               
               
               Cow position:chrX:20801952-20801755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:217-456
               
               
               Cow position:chrX:7806612-7806374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:222-405
               
               
               Cow position:chrX:39126508-39126326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:222-449
               
               
               Cow position:chrX:25570802-25571038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:223-451
               
               
               Cow position:chrX:47744268-47744045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):196, 48

               
               
               Conread position:224-357
               
               
               Cow position:chrX:46146096-46146225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:224-403
               
               
               Cow position:chrX:16419326-16419153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:224-451
               
               
               Cow position:chrX:41560091-41560298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):195, 45

               
               
               Conread position:224-455
               
               
               Cow position:chrX:37119775-37119546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:224-456
               
               
               Cow position:chrX:630128-630357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:225-451
               
               
               Cow position:chrX:28930014-28929793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):181, 44

               
               
               Conread position:225-452
               
               
               Cow position:chrX:17630622-17630851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:226-456
               
               
               Cow position:chrX:2301102-2300874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):195, 44

               
               
               Conread position:227-352
               
               
               Cow position:chrX:3951217-3951094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:227-450
               
               
               Cow position:chrX:39338927-39339147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):145, 163

               
               
               Conread position:227-451
               
               
               Cow position:chrX:24131976-24132194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):195, 24

               
               
               Conread position:228-436
               
               
               Cow position:chrX:27176138-27176345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):184, 40

               
               
               Conread position:230-451
               
               
               Cow position:chrX:37761044-37760841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):192, 32

               
               
               Conread position:230-454
               
               
               Cow position:chrX:39545812-39546023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):189, 42

               
               
               Conread position:239-429
               
               
               Cow position:chrX:31602822-31602634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):182, 31

               
               
               Conread position:240-449
               
               
               Cow position:chrX:6367613-6367818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:240-451
               
               
               Cow position:chrX:24259418-24259627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:240-456
               
               
               Cow position:chrX:17042846-17042644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:241-451
               
               
               Cow position:chrX:25418988-25419201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:244-440
               
               
               Cow position:chrX:21640584-21640392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):164, 24

               
               
               Conread position:249-455
               
               
               Cow position:chrX:26493480-26493684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 30

               
               
               Conread position:251-451
               
               
               Cow position:chrX:32743685-32743491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:256-451
               
               
               Cow position:chrX:42247035-42247230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:259-451
               
               
               Cow position:chrX:30163150-30162953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:259-455
               
               
               Cow position:chrX:34565429-34565233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):152, 31

               
               
               Conread position:260-451
               
               
               Cow position:chrX:29601682-29601874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:263-500
               
               
               Cow position:chrX:42894068-42893824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:265-451
               
               
               Cow position:chrX:29032548-29032366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):139, 25

               
               
               Conread position:269-446
               
               
               Cow position:chrX:9041108-9041284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:271-440
               
               
               Cow position:chrX:31515308-31515135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:271-451
               
               
               Cow position:chrX:29680127-29680304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:277-449
               
               
               Cow position:chrX:28111637-28111465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):142, 40

               
               
               Conread position:277-451
               
               
               Cow position:chrX:7345211-7345042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:286-449
               
               
               Cow position:chrX:11313666-11313825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:287-451
               
               
               Cow position:chrX:13205505-13205348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:293-451
               
               
               Cow position:chrX:21566519-21566360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:301-451
               
               
               Cow position:chrX:25440894-25441038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:342-451
               
               
               Cow position:chrX:25232656-25232547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 67

               
               
               Conread position:351-452
               
               
               Cow position:chrX:30862370-30862268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 0
Conread position:	145-437
Cow position:	chr1:23041799-23041513 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	173
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	170, 5
Conread position:	179-411
Cow position:	chr1:75383186-75382953 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	163
Alignm E-value:	6e-22
Alignm gaps (pig, cow):	22, 111
Conread position:	184-451
Cow position:	chr1:60281566-60281306 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	181
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	103, 33
Conread position:	186-456
Cow position:	chr1:23100097-23099830 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	200
Alignm E-value:	0
Alignm gaps (pig, cow):	214, 83
Conread position:	189-451
Cow position:	chr1:41182048-41181781 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	183
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	74, 221
Conread position:	193-431
Cow position:	chr1:59147151-59147391 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	168
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	35, 82
Conread position:	193-437
Cow position:	chr1:11021209-11020976 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	174
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	77, 34
Conread position:	193-450
Cow position:	chr1:14098975-14098728 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	181
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	219, 76
Conread position:	194-384
Cow position:	chr1:50261741-50261927 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	143
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	13, 0
Conread position:	194-445
Cow position:	chr1:26427674-26427921 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	181
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	93, 10
Conread position:	194-451
Cow position:	chr1:29975424-29975667 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	195
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	227, 16
Conread position:	195-366
Cow position:	chr1:29338104-29337933 (view UCSC Genome Browser custom track)
Alignm length:	174
Alignm identity:	130
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	13, 78
Conread position:	195-386
Cow position:	chr1:95229143-95229333 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	145
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	76, 0
Conread position:	195-451
Cow position:	chr1:92010503-92010240 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	195
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	22, 122
Conread position:	195-467
Cow position:	chr1:96929216-96928954 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	194
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	224, 25
Conread position:	196-321
Cow position:	chr1:48143692-48143569 (view UCSC Genome Browser custom track)
Alignm length:	126
Alignm identity:	97
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	73, 0
Conread position:	196-355
Cow position:	chr1:90390194-90390353 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	131
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	69, 28
Conread position:	196-441
Cow position:	chr1:10063800-10064032 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	176
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	50, 0
Conread position:	196-451
Cow position:	chr1:15902681-15902427 (view UCSC Genome Browser custom track)
Alignm length:	258
Alignm identity:	195
Alignm E-value:	0
Alignm gaps (pig, cow):	226, 74
Conread position:	197-376
Cow position:	chr1:46822154-46821976 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	137
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	90, 73